Wall clock time and date at job start Tue Mar 31 2020 14:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35992 * 116.99701 * 2 1 4 4 C 1.38960 * 119.90879 * 359.97438 * 3 2 1 5 5 C 1.38035 * 120.34280 * 180.02562 * 4 3 2 6 6 C 1.38667 * 120.14842 * 0.02989 * 5 4 3 7 7 O 1.35738 * 120.09698 * 179.97438 * 6 5 4 8 8 C 1.42901 * 116.99753 * 0.02562 * 7 6 5 9 9 C 1.40118 * 119.80943 * 359.96705 * 6 5 4 10 10 C 1.47489 * 120.16982 * 179.97438 * 9 6 5 11 11 O 1.21600 * 120.00090 * 359.97438 * 10 9 6 12 12 N 1.34769 * 120.00239 * 180.02562 * 10 9 6 13 13 C 1.39131 * 120.00590 * 185.10411 * 12 10 9 14 14 C 1.39512 * 119.83184 * 34.47595 * 13 12 10 15 15 C 1.36356 * 120.16447 * 180.25923 * 14 13 12 16 16 C 1.40879 * 119.83083 * 359.49366 * 15 14 13 17 17 C 1.41145 * 120.15862 * 180.23452 * 16 15 14 18 18 H 1.07996 * 120.00012 * 25.65670 * 17 16 15 19 19 C 1.39909 * 119.99629 * 205.65635 * 17 16 15 20 20 N 1.30881 * 120.00087 * 16.83725 * 19 17 16 21 21 Si 1.86798 * 119.99963 * 196.83496 * 19 17 16 22 22 H 1.48497 * 109.47065 * 60.00045 * 21 19 17 23 23 H 1.48498 * 109.47178 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46939 * 300.00213 * 21 19 17 25 25 C 1.40876 * 119.67629 * 0.52280 * 16 15 14 26 26 C 1.36357 * 119.83008 * 359.73559 * 25 16 15 27 27 C 1.38232 * 119.89806 * 180.27470 * 3 2 1 28 28 H 1.09007 * 109.47104 * 60.00026 * 1 2 3 29 29 H 1.08992 * 109.47476 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47276 * 300.00495 * 1 2 3 31 31 H 1.08001 * 119.83098 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.92604 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.46535 * 180.02562 * 8 7 6 34 34 H 1.08993 * 109.47322 * 300.00548 * 8 7 6 35 35 H 1.08997 * 109.46832 * 60.00692 * 8 7 6 36 36 H 0.97006 * 120.00084 * 5.10227 * 12 10 9 37 37 H 1.08008 * 119.91673 * 359.97411 * 14 13 12 38 38 H 1.08004 * 120.08489 * 179.74231 * 15 14 13 39 39 H 0.96999 * 119.99809 * 179.97438 * 20 19 17 40 40 H 1.08003 * 120.08342 * 179.70848 * 25 16 15 41 41 H 1.08001 * 119.91417 * 179.97438 * 26 25 16 42 42 H 1.08000 * 120.08007 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2876 2.3759 -0.0005 5 6 1.9049 3.6105 -0.0011 6 6 3.2888 3.6973 -0.0017 7 8 3.8947 4.9119 -0.0028 8 6 3.0449 6.0608 -0.0026 9 6 4.0601 2.5274 -0.0011 10 6 5.5326 2.6104 -0.0023 11 8 6.0804 3.6960 -0.0044 12 7 6.2711 1.4830 -0.0023 13 6 7.6563 1.5587 0.1038 14 6 8.2391 2.5585 0.8829 15 6 9.5961 2.6421 0.9873 16 6 10.4096 1.7092 0.3146 17 6 11.8148 1.7863 0.4219 18 1 12.2658 2.2450 1.2893 19 6 12.6235 1.2684 -0.5957 20 7 12.1122 1.0171 -1.7739 21 14 14.4330 0.9358 -0.2725 22 1 14.5658 -0.0514 0.8288 23 1 15.0640 0.3938 -1.5026 24 1 15.1077 2.2012 0.1130 25 6 9.8138 0.7027 -0.4706 26 6 8.4555 0.6348 -0.5699 27 6 3.4269 1.2817 -0.0057 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2094 2.3144 -0.0005 32 1 1.3086 4.5110 -0.0019 33 1 3.6552 6.9640 -0.0040 34 1 2.4150 6.0469 -0.8919 35 1 2.4166 6.0477 0.8880 36 1 5.8369 0.6187 -0.0761 37 1 7.6141 3.2708 1.4010 38 1 10.0461 3.4191 1.5875 39 1 12.6729 0.6584 -2.4795 40 1 10.4313 -0.0131 -0.9930 41 1 7.9973 -0.1360 -1.1718 42 1 4.0148 0.3757 -0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008126471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:58 Heat of formation + Delta-G solvation = -71.506464 kcal Electronic energy + Delta-G solvation = -26513.075985 eV Core-core repulsion = 22616.307756 eV Total energy + Delta-G solvation = -3896.768230 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.87752 -40.72746 -39.94139 -38.93511 -37.23111 -36.17034 -34.78216 -32.65396 -31.47010 -30.84039 -30.59270 -28.34063 -27.76052 -26.91875 -24.88491 -23.44135 -23.08607 -22.38222 -21.23928 -19.77954 -19.25240 -18.63118 -18.23207 -17.61937 -17.31975 -16.95376 -16.88506 -16.42593 -16.04191 -15.86461 -15.65736 -15.57822 -14.99717 -14.83417 -14.40096 -14.26673 -13.99546 -13.74393 -13.69442 -13.52982 -13.27983 -13.15625 -12.85259 -12.75167 -12.51279 -12.45383 -12.44510 -11.91563 -11.75147 -11.44225 -11.35719 -11.15277 -10.83815 -10.61337 -10.23135 -9.48098 -8.89408 -8.77137 -8.59166 -6.27392 -0.31400 0.34270 0.85730 1.13791 1.39793 1.49369 1.53316 1.92885 2.20095 2.23443 2.31930 2.49855 2.68294 2.82412 3.61122 3.64473 3.73363 4.02419 4.05757 4.20884 4.34897 4.38590 4.40092 4.45739 4.48363 4.49141 4.64686 4.67397 4.75161 4.83352 4.91435 5.08173 5.12614 5.14678 5.16177 5.31833 5.38203 5.43552 5.65609 5.89088 6.03033 6.10155 6.33477 6.36224 6.48878 6.64330 6.73187 6.92604 6.98587 7.39039 8.33937 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.002574 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.261409 B =10876.145606 C =11939.695288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.332 6.332 3 C 0.080 3.920 4 C -0.127 4.127 5 C -0.172 4.172 6 C 0.132 3.868 7 O -0.319 6.319 8 C 0.012 3.988 9 C -0.153 4.153 10 C 0.541 3.459 11 O -0.553 6.553 12 N -0.641 5.641 13 C 0.008 3.992 14 C -0.085 4.085 15 C -0.233 4.233 16 C 0.076 3.924 17 C -0.495 4.495 18 H 0.076 0.924 19 C 0.034 3.966 20 N -0.824 5.824 21 Si 0.987 3.013 22 H -0.258 1.258 23 H -0.266 1.266 24 H -0.262 1.262 25 C -0.170 4.170 26 C -0.111 4.111 27 C -0.088 4.088 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.173 0.827 32 H 0.170 0.830 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.412 0.588 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.290 0.710 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.682 -0.578 1.446 25.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.247 6.247 3 C 0.035 3.965 4 C -0.145 4.145 5 C -0.190 4.190 6 C 0.084 3.916 7 O -0.232 6.232 8 C -0.082 4.082 9 C -0.157 4.157 10 C 0.331 3.669 11 O -0.432 6.432 12 N -0.287 5.287 13 C -0.085 4.085 14 C -0.105 4.105 15 C -0.253 4.253 16 C 0.073 3.927 17 C -0.524 4.524 18 H 0.094 0.906 19 C -0.181 4.181 20 N -0.450 5.450 21 Si 0.807 3.193 22 H -0.182 1.182 23 H -0.190 1.190 24 H -0.186 1.186 25 C -0.190 4.190 26 C -0.131 4.131 27 C -0.107 4.107 28 H 0.087 0.913 29 H 0.134 0.866 30 H 0.087 0.913 31 H 0.191 0.809 32 H 0.188 0.812 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.250 0.750 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.131 0.869 41 H 0.141 0.859 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -24.991 -0.016 1.210 25.020 hybrid contribution 0.505 -0.053 -0.041 0.509 sum -24.486 -0.069 1.169 24.514 Atomic orbital electron populations 1.23397 0.76216 1.05742 1.02534 1.86097 1.23578 1.25749 1.89234 1.18710 0.91434 0.85591 1.00802 1.21596 1.01946 0.90391 1.00599 1.21332 0.91299 1.00446 1.05923 1.19237 0.91796 0.84969 0.95583 1.86392 1.36644 1.12783 1.87354 1.23421 0.95975 0.85998 1.02780 1.19041 0.91164 0.92693 1.12762 1.18519 0.87421 0.83994 0.76980 1.90793 1.73545 1.28832 1.50022 1.42808 1.04621 1.09235 1.72025 1.17212 0.82207 1.03226 1.05898 1.20326 0.94453 0.97800 0.97942 1.20777 0.93277 1.01806 1.09409 1.17984 0.94027 0.89869 0.90799 1.19765 0.91618 1.35646 1.05397 0.90613 1.26805 1.06023 0.91961 0.93329 1.69888 1.40393 1.32153 1.02587 0.85191 0.75434 0.79684 0.79002 1.18228 1.18992 1.18627 1.20910 0.93347 1.00273 1.04463 1.20487 0.93620 0.99796 0.99227 1.20447 0.93008 0.96118 1.01137 0.91294 0.86555 0.91280 0.80938 0.81232 0.87823 0.90751 0.90683 0.74978 0.88425 0.88679 0.89962 0.86932 0.85894 0.83393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -5.82 10.49 -93.46 -0.98 -6.80 16 3 C 0.08 1.59 6.67 22.44 0.15 1.74 16 4 C -0.13 -1.93 9.02 22.39 0.20 -1.73 16 5 C -0.17 -3.09 9.02 22.32 0.20 -2.89 16 6 C 0.13 3.70 6.70 22.83 0.15 3.86 16 7 O -0.32 -9.99 8.56 -69.66 -0.60 -10.59 16 8 C 0.01 0.22 9.81 113.37 1.11 1.34 16 9 C -0.15 -4.80 5.88 -20.02 -0.12 -4.92 16 10 C 0.54 22.04 7.48 86.68 0.65 22.69 16 11 O -0.55 -27.42 12.87 16.92 0.22 -27.20 16 12 N -0.64 -25.00 5.25 -306.01 -1.61 -26.61 16 13 C 0.01 0.38 6.27 38.60 0.24 0.62 16 14 C -0.09 -4.46 8.57 22.14 0.19 -4.27 16 15 C -0.23 -12.85 9.74 22.48 0.22 -12.63 16 16 C 0.08 4.35 5.57 -21.27 -0.12 4.23 16 17 C -0.50 -27.83 9.04 23.39 0.21 -27.62 16 18 H 0.08 4.11 7.90 -2.91 -0.02 4.09 16 19 C 0.03 1.74 5.15 85.24 0.44 2.18 16 20 N -0.82 -44.14 10.95 21.82 0.24 -43.90 16 21 Si 0.99 39.05 29.59 68.60 2.03 41.08 16 22 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 23 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 24 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 25 C -0.17 -9.23 8.63 22.48 0.19 -9.04 16 26 C -0.11 -5.33 9.90 22.14 0.22 -5.12 16 27 C -0.09 -2.18 9.47 22.63 0.21 -1.96 16 28 H 0.07 0.35 7.65 -2.38 -0.02 0.34 16 29 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.35 7.65 -2.39 -0.02 0.33 16 31 H 0.17 1.22 6.27 -2.91 -0.02 1.20 16 32 H 0.17 1.83 6.29 -2.91 -0.02 1.81 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 35 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 36 H 0.41 12.60 6.86 -92.70 -0.64 11.96 16 37 H 0.10 5.12 6.47 -2.91 -0.02 5.10 16 38 H 0.10 5.05 8.06 -2.91 -0.02 5.02 16 39 H 0.29 13.95 8.30 -92.71 -0.77 13.19 16 40 H 0.11 6.23 6.18 -2.91 -0.02 6.21 16 41 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 42 H 0.15 3.26 6.42 -2.91 -0.02 3.24 16 Total: -1.00 -77.46 353.46 5.02 -72.45 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: 0.44 Total: 33.86 kcal Atomic # 6 Polarization: -37.56 SS G_CDS: 5.27 Total: -32.29 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -1.37 Total: -70.51 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -1.36 Total: -44.59 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -77.46 5.02 -72.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008126471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.940 kcal (2) G-P(sol) polarization free energy of solvation -77.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds