Wall clock time and date at job start Tue Mar 31 2020 14:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42892 * 114.00078 * 2 1 4 4 C 1.50708 * 109.47062 * 180.02562 * 3 2 1 5 5 C 1.38357 * 119.85022 * 89.99747 * 4 3 2 6 6 C 1.37959 * 120.14300 * 180.02562 * 5 4 3 7 7 C 1.39590 * 119.85255 * 359.97438 * 6 5 4 8 8 C 1.47808 * 120.14811 * 180.02562 * 7 6 5 9 9 O 1.21571 * 119.99831 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00315 * 180.02562 * 8 7 6 11 11 C 1.39914 * 120.00034 * 175.48134 * 10 8 7 12 12 C 1.38939 * 120.00156 * 214.86181 * 11 10 8 13 13 C 1.38000 * 119.99611 * 179.79586 * 12 11 10 14 14 C 1.38914 * 119.99833 * 0.47613 * 13 12 11 15 15 O 1.35780 * 119.98953 * 179.72752 * 14 13 12 16 16 C 1.34814 * 116.99517 * 185.37836 * 15 14 13 17 17 H 1.08001 * 119.99851 * 354.96606 * 16 15 14 18 18 C 1.38636 * 120.00287 * 174.96280 * 16 15 14 19 19 N 1.31573 * 119.99260 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00468 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46732 * 60.00010 * 20 18 16 22 22 H 1.48496 * 109.47293 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46908 * 300.00327 * 20 18 16 24 24 C 1.38910 * 120.00879 * 359.75494 * 14 13 12 25 25 C 1.37994 * 120.00323 * 0.02562 * 24 14 13 26 26 C 1.39594 * 119.70655 * 0.28100 * 7 6 5 27 27 C 1.37957 * 119.85423 * 359.44236 * 26 7 6 28 28 H 1.09005 * 109.47250 * 300.00088 * 1 2 3 29 29 H 1.09001 * 109.47312 * 59.99299 * 1 2 3 30 30 H 1.08997 * 109.47911 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47335 * 60.00288 * 3 2 1 32 32 H 1.09000 * 109.47348 * 299.99896 * 3 2 1 33 33 H 1.07988 * 119.93096 * 0.04556 * 5 4 3 34 34 H 1.07993 * 120.07260 * 179.97438 * 6 5 4 35 35 H 0.96998 * 119.99751 * 355.48218 * 10 8 7 36 36 H 1.08008 * 120.00382 * 359.97438 * 12 11 10 37 37 H 1.07998 * 120.00118 * 180.23164 * 13 12 11 38 38 H 0.97001 * 119.99874 * 180.02562 * 19 18 16 39 39 H 1.08004 * 119.99715 * 179.97438 * 24 14 13 40 40 H 1.08004 * 120.00121 * 179.97438 * 25 24 14 41 41 H 1.08007 * 120.07445 * 179.69769 * 26 7 6 42 42 H 1.07999 * 119.92931 * 180.27901 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.1986 1.1321 -1.2009 6 6 5.5738 1.0226 -1.2086 7 6 6.2731 0.9671 -0.0018 8 6 7.7466 0.8503 -0.0023 9 8 8.3521 0.8020 -1.0554 10 7 8.4188 0.7964 1.1646 11 6 9.8028 0.5910 1.1659 12 6 10.3938 -0.1527 2.1798 13 6 11.7584 -0.3588 2.1786 14 6 12.5421 0.1857 1.1691 15 8 13.8854 -0.0126 1.1712 16 6 14.6008 0.6336 0.2287 17 1 14.0954 1.2088 -0.5329 18 6 15.9851 0.5598 0.2373 19 7 16.6007 -0.1413 1.1650 20 14 16.9763 1.4545 -1.0689 21 1 16.6942 2.9105 -0.9934 22 1 18.4244 1.2179 -0.8401 23 1 16.5982 0.9460 -2.4120 24 6 11.9519 0.9333 0.1580 25 6 10.5869 1.1357 0.1565 26 6 5.5743 1.0169 1.2056 27 6 4.1996 1.1322 1.1992 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8463 -0.8900 33 1 3.6565 1.1759 -2.1338 34 1 6.1081 0.9800 -2.1461 35 1 7.9431 0.9000 2.0036 36 1 9.7850 -0.5719 2.9673 37 1 12.2174 -0.9400 2.9646 38 1 17.5693 -0.1927 1.1713 39 1 12.5615 1.3568 -0.6265 40 1 10.1281 1.7173 -0.6294 41 1 6.1090 0.9695 2.1429 42 1 3.6581 1.1754 2.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000018830585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:13 Heat of formation + Delta-G solvation = -68.847432 kcal Electronic energy + Delta-G solvation = -25428.304748 eV Core-core repulsion = 21531.651823 eV Total energy + Delta-G solvation = -3896.652925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.76914 -40.66218 -39.88372 -38.49412 -38.01588 -35.56322 -34.21940 -33.21110 -32.01644 -31.87928 -29.81396 -28.30382 -27.29305 -26.47315 -24.30342 -23.76066 -23.64384 -22.58752 -21.25627 -20.07466 -19.42628 -18.66459 -18.06567 -17.35503 -17.11645 -16.83097 -16.54088 -16.33962 -16.22529 -15.76019 -15.52605 -15.49471 -15.33091 -15.16076 -14.67146 -14.49348 -14.33411 -14.06710 -13.69379 -13.54311 -13.28054 -13.21376 -13.12531 -12.70836 -12.53673 -12.47002 -12.17200 -12.15178 -12.05878 -11.45453 -11.22284 -10.89022 -10.63773 -10.55747 -10.00172 -9.96331 -9.86099 -8.64369 -8.47386 -6.14302 -0.34821 0.36988 0.50902 0.57719 1.34718 1.44298 1.50444 1.72037 2.02483 2.17958 2.63593 2.81823 3.12849 3.17373 3.49792 3.57372 3.75422 3.90435 3.97154 4.09075 4.10116 4.21746 4.32418 4.45364 4.46329 4.55443 4.60068 4.62399 4.64932 4.71204 4.76875 4.91528 5.00989 5.06364 5.10243 5.22268 5.29683 5.32489 5.44994 5.49063 5.55940 5.68201 5.83639 6.01174 6.12982 6.21090 6.45885 6.96920 7.12107 7.75542 8.74900 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.036667 B = 0.001880 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.454656 B =14887.164458 C =15449.629598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.097 3.903 4 C -0.072 4.072 5 C -0.109 4.109 6 C -0.078 4.078 7 C -0.141 4.141 8 C 0.548 3.452 9 O -0.567 6.567 10 N -0.641 5.641 11 C 0.058 3.942 12 C -0.075 4.075 13 C -0.179 4.179 14 C 0.108 3.892 15 O -0.226 6.226 16 C -0.416 4.416 17 H 0.097 0.903 18 C -0.019 4.019 19 N -0.916 5.916 20 Si 1.016 2.984 21 H -0.258 1.258 22 H -0.268 1.268 23 H -0.261 1.261 24 C -0.229 4.229 25 C -0.076 4.076 26 C -0.082 4.082 27 C -0.104 4.104 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.146 0.854 34 H 0.125 0.875 35 H 0.424 0.576 36 H 0.169 0.831 37 H 0.131 0.869 38 H 0.273 0.727 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.157 0.843 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.676 4.850 1.432 34.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.021 3.979 4 C -0.072 4.072 5 C -0.127 4.127 6 C -0.097 4.097 7 C -0.144 4.144 8 C 0.339 3.661 9 O -0.446 6.446 10 N -0.288 5.288 11 C -0.036 4.036 12 C -0.094 4.094 13 C -0.198 4.198 14 C 0.057 3.943 15 O -0.132 6.132 16 C -0.492 4.492 17 H 0.114 0.886 18 C -0.217 4.217 19 N -0.554 5.554 20 Si 0.835 3.165 21 H -0.183 1.183 22 H -0.192 1.192 23 H -0.186 1.186 24 C -0.249 4.249 25 C -0.096 4.096 26 C -0.101 4.101 27 C -0.122 4.122 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.164 0.836 34 H 0.143 0.857 35 H 0.265 0.735 36 H 0.186 0.814 37 H 0.149 0.851 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.174 0.826 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -32.839 4.451 0.917 33.152 hybrid contribution 0.700 0.466 -0.485 0.970 sum -32.139 4.917 0.433 32.516 Atomic orbital electron populations 1.22943 0.79180 1.03769 1.01218 1.87936 1.21585 1.28083 1.95688 1.21508 0.88246 0.85158 1.02945 1.20137 0.95520 0.98040 0.93509 1.21218 0.93002 0.99369 0.99114 1.21326 0.94707 0.96112 0.97514 1.19831 0.90701 1.07800 0.96112 1.18882 0.88274 0.75667 0.83314 1.90770 1.70437 1.50713 1.32721 1.42978 1.05212 1.70858 1.09744 1.17389 0.83015 1.03764 0.99408 1.20797 0.93127 0.96577 0.98924 1.20334 0.93518 1.06510 0.99484 1.19952 0.84734 0.94808 0.94777 1.83936 1.14276 1.62896 1.52098 1.21735 0.89342 1.30555 1.07583 0.88571 1.26521 0.96553 0.97972 1.00645 1.70170 1.10072 1.40211 1.34941 0.84690 0.76754 0.78390 0.76650 1.18260 1.19225 1.18555 1.21096 0.95529 1.06779 1.01521 1.20935 0.91857 0.98281 0.98536 1.21588 0.95008 0.96502 0.96953 1.21334 0.93525 0.98500 0.98836 0.92599 0.92941 0.89015 0.90076 0.90842 0.83610 0.85704 0.73535 0.81350 0.85094 0.91756 0.86483 0.85729 0.82586 0.82341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 11.01 113.37 1.25 1.42 16 2 O -0.41 -5.68 10.69 -148.98 -1.59 -7.27 16 3 C 0.10 0.94 6.06 71.24 0.43 1.37 16 4 C -0.07 -0.98 5.52 -19.80 -0.11 -1.09 16 5 C -0.11 -1.76 9.68 22.23 0.22 -1.54 16 6 C -0.08 -1.66 9.60 22.53 0.22 -1.44 16 7 C -0.14 -3.09 5.87 -20.09 -0.12 -3.21 16 8 C 0.55 15.95 7.61 86.78 0.66 16.61 16 9 O -0.57 -21.71 13.78 -3.94 -0.05 -21.76 16 10 N -0.64 -16.42 5.28 -305.99 -1.62 -18.04 16 11 C 0.06 1.98 6.30 38.19 0.24 2.22 16 12 C -0.07 -2.41 9.96 22.38 0.22 -2.19 16 13 C -0.18 -7.42 9.98 22.38 0.22 -7.20 16 14 C 0.11 5.52 6.65 22.59 0.15 5.67 16 15 O -0.23 -13.78 9.76 -22.91 -0.22 -14.00 16 16 C -0.42 -24.91 9.48 67.92 0.64 -24.27 16 17 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 18 C -0.02 -1.09 5.49 84.83 0.47 -0.63 16 19 N -0.92 -56.56 13.67 21.61 0.30 -56.27 16 20 Si 1.02 44.03 29.55 68.60 2.03 46.06 16 21 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 24 C -0.23 -10.96 9.16 22.37 0.20 -10.75 16 25 C -0.08 -3.15 8.69 22.38 0.19 -2.96 16 26 C -0.08 -1.18 9.54 22.53 0.21 -0.97 16 27 C -0.10 -1.26 9.68 22.23 0.22 -1.04 16 28 H 0.06 0.24 8.14 -2.38 -0.02 0.22 16 29 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 0.46 8.08 -2.38 -0.02 0.44 16 32 H 0.07 0.52 8.08 -2.39 -0.02 0.50 16 33 H 0.15 1.77 8.06 -2.92 -0.02 1.74 16 34 H 0.12 2.94 7.65 -2.91 -0.02 2.92 16 35 H 0.42 6.85 6.87 -92.71 -0.64 6.21 16 36 H 0.17 3.70 8.06 -2.91 -0.02 3.68 16 37 H 0.13 5.14 8.06 -2.91 -0.02 5.12 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.12 5.76 5.63 -2.91 -0.02 5.74 16 40 H 0.12 5.19 6.22 -2.91 -0.02 5.17 16 41 H 0.16 1.28 6.42 -2.91 -0.02 1.26 16 42 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -81.33 363.45 4.59 -76.74 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.43 Total: 24.53 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 5.32 Total: -30.00 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -1.32 Total: -74.30 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -1.87 Total: -43.03 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -81.33 4.59 -76.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018830585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.897 kcal (2) G-P(sol) polarization free energy of solvation -81.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds