Wall clock time and date at job start Tue Mar 31 2020 14:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35964 * 117.00324 * 2 1 4 4 C 1.38733 * 119.96207 * 0.02562 * 3 2 1 5 5 C 1.38176 * 120.10895 * 180.02562 * 4 3 2 6 6 C 1.38722 * 120.03282 * 359.72434 * 5 4 3 7 7 N 1.40232 * 120.03318 * 180.29842 * 6 5 4 8 8 C 1.34778 * 120.00186 * 19.51054 * 7 6 5 9 9 O 1.21576 * 119.99722 * 5.39694 * 8 7 6 10 10 C 1.47858 * 119.99801 * 185.39866 * 8 7 6 11 11 C 1.39924 * 120.02843 * 359.72125 * 10 8 7 12 12 C 1.38326 * 120.36179 * 179.69827 * 11 10 8 13 13 C 1.37762 * 120.40501 * 0.60183 * 12 11 10 14 14 C 1.40752 * 120.04624 * 359.68116 * 13 12 11 15 15 C 1.41433 * 120.17955 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00306 * 151.32325 * 15 14 13 17 17 C 1.39932 * 119.99746 * 331.32401 * 15 14 13 18 18 N 1.30828 * 119.99915 * 167.37274 * 17 15 14 19 19 Si 1.86802 * 120.00166 * 347.37235 * 17 15 14 20 20 H 1.48500 * 109.47114 * 95.32114 * 19 17 15 21 21 H 1.48507 * 109.47165 * 215.32250 * 19 17 15 22 22 H 1.48495 * 109.47345 * 335.32208 * 19 17 15 23 23 C 1.39006 * 120.02357 * 180.02562 * 10 8 7 24 24 C 1.39308 * 119.92600 * 0.52537 * 6 5 4 25 25 O 1.35972 * 120.05105 * 179.75035 * 24 6 5 26 26 C 1.42898 * 116.99823 * 179.73095 * 25 24 6 27 27 C 1.38501 * 119.89210 * 359.47794 * 24 6 5 28 28 H 1.09001 * 109.47375 * 300.00650 * 1 2 3 29 29 H 1.09002 * 109.46482 * 60.00321 * 1 2 3 30 30 H 1.08993 * 109.47422 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.94942 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.98141 * 179.97438 * 5 4 3 33 33 H 0.96998 * 119.99744 * 199.51061 * 7 6 5 34 34 H 1.08009 * 119.81998 * 359.97438 * 11 10 8 35 35 H 1.07995 * 119.79978 * 180.28864 * 12 11 10 36 36 H 1.08001 * 119.97537 * 179.69955 * 13 12 11 37 37 H 0.97003 * 120.00116 * 180.02562 * 18 17 15 38 38 H 1.07997 * 120.20323 * 359.97438 * 23 10 8 39 39 H 1.08996 * 109.47031 * 179.97438 * 26 25 24 40 40 H 1.08998 * 109.47021 * 59.99413 * 26 25 24 41 41 H 1.09002 * 109.46895 * 299.99419 * 26 25 24 42 42 H 1.08002 * 120.01706 * 180.25548 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2900 2.3745 0.0005 5 6 1.9142 3.6072 0.0000 6 6 3.2993 3.6841 0.0047 7 7 3.9328 4.9351 0.0105 8 6 3.2545 6.0322 0.4014 9 8 2.1263 5.9246 0.8416 10 6 3.8823 7.3666 0.2948 11 6 5.1828 7.4905 -0.2064 12 6 5.7746 8.7361 -0.3150 13 6 5.0954 9.8675 0.0804 14 6 3.7886 9.7621 0.5925 15 6 3.0885 10.9219 0.9988 16 1 2.0101 10.9474 0.9477 17 6 3.7933 12.0365 1.4670 18 7 3.1824 13.1847 1.6081 19 14 5.6063 11.8849 1.8905 20 1 6.4239 12.3091 0.7256 21 1 5.9168 12.7521 3.0553 22 1 5.9197 10.4729 2.2271 23 6 3.1834 8.4984 0.6983 24 6 4.0601 2.5171 -0.0011 25 8 5.4179 2.5895 -0.0016 26 6 6.1335 1.3526 -0.0018 27 6 3.4313 1.2831 -0.0006 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 0.2116 2.3163 0.0014 32 1 1.3234 4.5113 0.0000 33 1 4.8592 5.0109 -0.2669 34 1 5.7260 6.6092 -0.5144 35 1 6.7771 8.8216 -0.7074 36 1 5.5659 10.8361 -0.0029 37 1 3.6710 13.9575 1.9323 38 1 2.1811 8.4071 1.0899 39 1 7.2049 1.5528 -0.0027 40 1 5.8703 0.7807 -0.8915 41 1 5.8711 0.7810 0.8885 42 1 4.0192 0.3771 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042210845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:15 Heat of formation + Delta-G solvation = -71.307388 kcal Electronic energy + Delta-G solvation = -26529.912378 eV Core-core repulsion = 22633.152781 eV Total energy + Delta-G solvation = -3896.759597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.05921 -40.86411 -39.90904 -39.22843 -37.47608 -35.74846 -35.36213 -32.67402 -31.91421 -31.46140 -30.20339 -28.10796 -27.97566 -27.07007 -25.21756 -23.68560 -22.91966 -22.44637 -21.53054 -20.04385 -19.52910 -18.59313 -18.09405 -17.78226 -17.39433 -17.04986 -16.75939 -16.48067 -16.42106 -16.11348 -15.91143 -15.69995 -15.47012 -14.99259 -14.58193 -14.45519 -14.11583 -13.99278 -13.84138 -13.68387 -13.37328 -13.22133 -12.89614 -12.65980 -12.54562 -12.47686 -12.32748 -12.13107 -11.92240 -11.67464 -11.57967 -11.21100 -11.03683 -10.66617 -9.67145 -9.65163 -9.60957 -8.90667 -8.55668 -6.57626 -0.06143 0.26451 0.43700 0.72831 1.25188 1.42233 1.49261 1.86304 1.94712 2.11025 2.12538 2.43544 2.59284 2.74500 3.43387 3.64600 3.82431 3.98429 4.12017 4.22191 4.22307 4.36729 4.39273 4.40840 4.44765 4.46094 4.53591 4.58987 4.74595 4.76900 4.80328 4.85562 4.88709 5.03862 5.14910 5.30394 5.33537 5.40448 5.59962 5.61505 5.67745 5.81729 6.06320 6.21573 6.27225 6.40439 6.44663 6.62288 6.72222 7.07539 8.18029 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.021667 B = 0.002702 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.953669 B =10359.432771 C =11433.500422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.142 3.858 4 C -0.222 4.222 5 C -0.084 4.084 6 C 0.068 3.932 7 N -0.642 5.642 8 C 0.562 3.438 9 O -0.559 6.559 10 C -0.112 4.112 11 C -0.183 4.183 12 C -0.081 4.081 13 C -0.222 4.222 14 C 0.064 3.936 15 C -0.481 4.481 16 H 0.051 0.949 17 C 0.040 3.960 18 N -0.853 5.853 19 Si 0.971 3.029 20 H -0.248 1.248 21 H -0.282 1.282 22 H -0.243 1.243 23 C -0.159 4.159 24 C 0.138 3.862 25 O -0.325 6.325 26 C 0.018 3.982 27 C -0.221 4.221 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.124 0.876 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.424 0.576 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.106 0.894 37 H 0.295 0.705 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.102 -25.778 -4.757 26.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.239 6.239 3 C 0.095 3.905 4 C -0.241 4.241 5 C -0.104 4.104 6 C -0.027 4.027 7 N -0.287 5.287 8 C 0.353 3.647 9 O -0.440 6.440 10 C -0.115 4.115 11 C -0.202 4.202 12 C -0.098 4.098 13 C -0.241 4.241 14 C 0.062 3.938 15 C -0.511 4.511 16 H 0.069 0.931 17 C -0.174 4.174 18 N -0.479 5.479 19 Si 0.794 3.206 20 H -0.173 1.173 21 H -0.210 1.210 22 H -0.167 1.167 23 C -0.180 4.180 24 C 0.090 3.910 25 O -0.239 6.239 26 C -0.076 4.076 27 C -0.240 4.240 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.143 0.857 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.264 0.736 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.141 0.859 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.479 -25.566 -4.402 26.514 hybrid contribution -0.051 0.753 0.254 0.797 sum 5.428 -24.813 -4.148 25.736 Atomic orbital electron populations 1.23366 0.76392 1.05725 1.02226 1.86026 1.23413 1.26021 1.88473 1.18761 0.91831 0.84506 0.95385 1.21244 1.01238 0.90907 1.10719 1.21352 0.92507 0.99523 0.97069 1.17309 0.91731 0.83225 1.10443 1.43082 1.16522 1.04417 1.64684 1.18704 0.85085 0.84863 0.76035 1.90595 1.20348 1.86825 1.46184 1.19535 0.96497 0.90938 1.04535 1.20990 0.93885 0.98235 1.07131 1.21006 0.99834 0.91476 0.97526 1.21337 0.96814 0.98672 1.07317 1.17778 0.92822 0.92170 0.91058 1.19491 0.95073 0.96909 1.39601 0.93060 1.26956 1.05374 0.93114 0.91962 1.69690 1.41407 1.01514 1.35308 0.85435 0.76547 0.80158 0.78487 1.17333 1.20963 1.16693 1.21165 1.00114 0.91487 1.05222 1.18230 0.83305 0.91378 0.98096 1.86031 1.13927 1.35356 1.88584 1.23421 0.97448 0.84157 1.02572 1.20356 0.92756 0.97152 1.13780 0.92131 0.91791 0.85739 0.83350 0.83930 0.73613 0.83741 0.83354 0.87624 0.89448 0.88758 0.85871 0.91175 0.91657 0.81914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.33 10.50 -93.14 -0.98 -7.30 16 3 C 0.14 3.23 6.68 22.50 0.15 3.38 16 4 C -0.22 -5.53 9.03 22.37 0.20 -5.33 16 5 C -0.08 -2.62 8.78 22.37 0.20 -2.42 16 6 C 0.07 2.04 6.52 38.17 0.25 2.29 16 7 N -0.64 -20.12 5.28 -305.57 -1.61 -21.73 16 8 C 0.56 22.03 7.62 86.79 0.66 22.69 16 9 O -0.56 -25.00 13.22 -3.96 -0.05 -25.05 16 10 C -0.11 -4.65 5.87 -20.14 -0.12 -4.77 16 11 C -0.18 -6.34 9.54 22.70 0.22 -6.12 16 12 C -0.08 -2.91 10.01 22.18 0.22 -2.69 16 13 C -0.22 -9.88 6.88 22.77 0.16 -9.73 16 14 C 0.06 3.30 5.19 -21.32 -0.11 3.19 16 15 C -0.48 -27.56 9.61 23.47 0.23 -27.34 16 16 H 0.05 3.22 8.06 -2.91 -0.02 3.19 16 17 C 0.04 2.14 5.47 85.25 0.47 2.61 16 18 N -0.85 -47.27 13.93 21.82 0.30 -46.97 16 19 Si 0.97 41.60 24.36 68.60 1.67 43.27 16 20 H -0.25 -9.67 6.78 99.48 0.67 -9.00 16 21 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 22 H -0.24 -10.45 6.43 99.48 0.64 -9.81 16 23 C -0.16 -7.87 9.34 23.01 0.21 -7.66 16 24 C 0.14 3.39 6.70 22.59 0.15 3.54 16 25 O -0.33 -6.70 9.84 -93.24 -0.92 -7.62 16 26 C 0.02 0.20 9.81 113.37 1.11 1.31 16 27 C -0.22 -4.75 8.97 22.44 0.20 -4.55 16 28 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 29 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 30 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.15 3.01 6.28 -2.91 -0.02 2.99 16 32 H 0.14 5.15 5.40 -2.91 -0.02 5.14 16 33 H 0.42 11.05 6.27 -92.71 -0.58 10.46 16 34 H 0.15 3.70 6.39 -2.91 -0.02 3.68 16 35 H 0.15 4.05 8.06 -2.91 -0.02 4.02 16 36 H 0.11 4.59 4.15 -2.91 -0.01 4.58 16 37 H 0.30 14.60 8.30 -92.71 -0.77 13.83 16 38 H 0.09 4.95 7.64 -2.91 -0.02 4.93 16 39 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 41 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 42 H 0.16 2.58 6.30 -2.91 -0.02 2.56 16 Total: -1.00 -69.83 347.06 4.13 -65.70 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.41 Total: 29.97 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: 5.31 Total: -30.27 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -1.31 Total: -68.70 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -1.95 Total: -39.97 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.67 Total: 43.27 kcal Total: -69.83 4.13 -65.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042210845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.605 kcal (2) G-P(sol) polarization free energy of solvation -69.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds