Wall clock time and date at job start Tue Mar 31 2020 14:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35907 * 117.00069 * 2 1 4 4 C 1.38733 * 120.05635 * 180.02562 * 3 2 1 5 5 C 1.38140 * 119.94713 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05140 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94072 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47166 * 90.00264 * 7 6 5 9 9 O 1.21287 * 119.99573 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99975 * 179.97438 * 8 7 6 11 11 C 1.39921 * 119.99877 * 174.78368 * 10 8 7 12 12 C 1.38965 * 120.03677 * 326.32563 * 11 10 8 13 13 C 1.38157 * 120.06801 * 180.02562 * 12 11 10 14 14 C 1.38169 * 120.13706 * 359.70116 * 13 12 11 15 15 C 1.38906 * 120.07315 * 0.55189 * 14 13 12 16 16 O 1.35748 * 120.03767 * 179.74321 * 15 14 13 17 17 C 1.34831 * 117.00041 * 173.82629 * 16 15 14 18 18 H 1.07995 * 120.00225 * 354.59241 * 17 16 15 19 19 C 1.38659 * 119.99714 * 174.59445 * 17 16 15 20 20 N 1.31558 * 120.00276 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99830 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47191 * 90.00132 * 21 19 17 23 23 H 1.48500 * 109.47295 * 209.99948 * 21 19 17 24 24 H 1.48507 * 109.47256 * 330.00497 * 21 19 17 25 25 C 1.38716 * 120.03490 * 146.34353 * 11 10 8 26 26 C 1.38261 * 120.11575 * 0.25564 * 6 5 4 27 27 C 1.38150 * 120.05436 * 359.45331 * 26 6 5 28 28 H 1.08992 * 109.47352 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46868 * 299.99959 * 1 2 3 30 30 H 1.08999 * 109.47122 * 59.99484 * 1 2 3 31 31 H 1.08004 * 120.02728 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.97496 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47232 * 330.00078 * 7 6 5 34 34 H 1.09002 * 109.46820 * 210.00186 * 7 6 5 35 35 H 0.96999 * 120.00281 * 354.77895 * 10 8 7 36 36 H 1.08000 * 119.96674 * 0.02638 * 12 11 10 37 37 H 1.08000 * 119.93094 * 179.97438 * 13 12 11 38 38 H 1.08006 * 119.96415 * 180.29447 * 14 13 12 39 39 H 0.96997 * 120.00343 * 179.97438 * 20 19 17 40 40 H 1.07994 * 120.06977 * 0.02562 * 25 11 10 41 41 H 1.08000 * 119.97919 * 179.70156 * 26 6 5 42 42 H 1.07994 * 120.03109 * 180.25185 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3019 3.6758 0.0016 7 6 3.9862 5.0185 0.0028 8 6 4.2136 5.4677 -1.4177 9 8 3.8548 4.7666 -2.3401 10 7 4.8146 6.6488 -1.6629 11 6 5.1243 7.0167 -2.9769 12 6 5.4877 6.0468 -3.9034 13 6 5.7941 6.4094 -5.2009 14 6 5.7344 7.7359 -5.5830 15 6 5.3769 8.7106 -4.6603 16 8 5.3235 10.0142 -5.0351 17 6 4.8474 10.8926 -4.1297 18 1 4.4488 10.5376 -3.1909 19 6 4.8697 12.2516 -4.4040 20 7 5.3548 12.6840 -5.5478 21 14 4.2094 13.4684 -3.1499 22 1 5.3066 13.8865 -2.2406 23 1 3.6683 14.6592 -3.8529 24 1 3.1286 12.8267 -2.3590 25 6 5.0692 8.3499 -3.3560 26 6 1.9212 3.6048 0.0080 27 6 1.2915 2.3752 0.0014 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 4.0209 0.3799 -0.0005 32 1 5.1346 2.5750 0.0000 33 1 4.9443 4.9376 0.5161 34 1 3.3584 5.7457 0.5177 35 1 5.0324 7.2439 -0.9285 36 1 5.5306 5.0086 -3.6090 37 1 6.0767 5.6539 -5.9191 38 1 5.9699 8.0156 -6.5993 39 1 5.3700 13.6346 -5.7399 40 1 4.7878 9.1055 -2.6376 41 1 1.3342 4.5114 0.0141 42 1 0.2130 2.3202 0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042786509.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:03 Heat of formation + Delta-G solvation = -44.709180 kcal Electronic energy + Delta-G solvation = -25890.029436 eV Core-core repulsion = 21994.423224 eV Total energy + Delta-G solvation = -3895.606212 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.57430 -39.97608 -38.71724 -37.68496 -36.35918 -34.20066 -32.50717 -32.20752 -31.26141 -29.51261 -28.77458 -28.04085 -26.57523 -25.28871 -22.92487 -22.55679 -21.81857 -21.20869 -19.96043 -18.40614 -17.98302 -17.73969 -16.77909 -16.56709 -15.98643 -15.91219 -15.30043 -15.21187 -14.93952 -14.55431 -14.27052 -14.18836 -13.89911 -13.78834 -13.60611 -13.51472 -12.99672 -12.74308 -12.49154 -12.28265 -12.13683 -11.76836 -11.71181 -11.56828 -11.27494 -11.11457 -11.03516 -10.99423 -10.75326 -10.44940 -9.92062 -9.56683 -9.44281 -9.16229 -8.81288 -8.29392 -7.73082 -7.15792 -6.45828 -4.05543 1.17361 1.20783 1.97063 2.37400 2.86601 3.01247 3.10777 3.11113 3.16067 3.22332 3.67989 3.94794 4.48763 4.53721 4.58699 4.66679 4.77847 4.83553 4.91577 5.01221 5.10218 5.12419 5.15400 5.26101 5.27440 5.38419 5.50188 5.71588 5.83443 5.99089 6.04296 6.07733 6.14689 6.25167 6.28376 6.41562 6.54562 6.63860 6.97371 6.99302 7.11943 7.15306 7.31111 7.41641 7.70512 7.81445 7.98414 8.33498 8.99497 9.70281 10.72239 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019630 B = 0.002266 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.046572 B =12353.570280 C =13071.665263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.124 3.876 4 C -0.150 4.150 5 C -0.064 4.064 6 C -0.101 4.101 7 C -0.097 4.097 8 C 0.509 3.491 9 O -0.510 6.510 10 N -0.672 5.672 11 C 0.181 3.819 12 C -0.205 4.205 13 C -0.063 4.063 14 C -0.201 4.201 15 C 0.168 3.832 16 O -0.176 6.176 17 C -0.391 4.391 18 H 0.090 0.910 19 C 0.039 3.961 20 N -0.862 5.862 21 Si 0.940 3.060 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.268 1.268 25 C -0.257 4.257 26 C -0.064 4.064 27 C -0.206 4.206 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.406 0.594 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.270 0.730 40 H 0.130 0.870 41 H 0.124 0.876 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.691 -18.923 15.170 24.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.169 4.169 5 C -0.083 4.083 6 C -0.101 4.101 7 C -0.137 4.137 8 C 0.295 3.705 9 O -0.384 6.384 10 N -0.317 5.317 11 C 0.088 3.912 12 C -0.226 4.226 13 C -0.082 4.082 14 C -0.220 4.220 15 C 0.113 3.887 16 O -0.080 6.080 17 C -0.468 4.468 18 H 0.107 0.893 19 C -0.165 4.165 20 N -0.497 5.497 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.202 1.202 24 H -0.193 1.193 25 C -0.278 4.278 26 C -0.082 4.082 27 C -0.225 4.225 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.241 0.759 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.080 0.920 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.795 -19.312 14.216 24.670 hybrid contribution -0.543 1.172 1.019 1.645 sum -6.338 -18.140 15.236 24.523 Atomic orbital electron populations 1.23047 0.78445 1.03849 1.01436 1.86056 1.21368 1.27095 1.88821 1.19034 0.92404 0.84060 0.96600 1.20356 0.91333 0.98548 1.06650 1.20792 0.99725 0.90970 0.96771 1.19157 0.93458 0.93665 1.03852 1.20620 1.02915 0.95693 0.94505 1.20644 0.77327 0.81034 0.91458 1.90750 1.48180 1.53563 1.45904 1.43540 1.59906 1.20312 1.07924 1.17407 0.97193 0.93009 0.83599 1.20531 1.09540 0.98528 0.94005 1.20532 0.97720 0.94748 0.95225 1.20249 1.10889 0.91532 0.99369 1.19091 0.92188 0.86051 0.91328 1.84019 1.72167 1.11400 1.40396 1.21261 1.39921 0.86283 0.99315 0.89289 1.25281 0.97036 0.96709 0.97511 1.70034 1.42416 1.15406 1.21833 0.85730 0.78950 0.79494 0.79336 1.19905 1.20249 1.19286 1.20821 1.14596 0.94660 0.97755 1.20781 0.93816 0.97162 0.96429 1.21165 0.99942 0.92272 1.09088 0.88309 0.92690 0.92558 0.85227 0.85392 0.87741 0.87895 0.75868 0.86397 0.86652 0.86400 0.92021 0.85272 0.85835 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.31 10.50 -19.45 -0.20 -3.51 16 3 C 0.12 1.38 6.69 -39.22 -0.26 1.12 16 4 C -0.15 -1.62 9.99 -39.43 -0.39 -2.02 16 5 C -0.06 -0.68 9.69 -39.61 -0.38 -1.07 16 6 C -0.10 -1.10 4.37 -104.60 -0.46 -1.55 16 7 C -0.10 -0.91 5.83 -29.03 -0.17 -1.08 16 8 C 0.51 7.16 7.56 -10.99 -0.08 7.08 16 9 O -0.51 -9.31 13.74 5.55 0.08 -9.23 16 10 N -0.67 -9.73 5.34 -9.88 -0.05 -9.78 16 11 C 0.18 3.44 6.27 -83.72 -0.52 2.91 16 12 C -0.21 -3.96 8.65 -39.34 -0.34 -4.30 16 13 C -0.06 -1.21 10.03 -39.64 -0.40 -1.61 16 14 C -0.20 -4.34 9.99 -39.36 -0.39 -4.73 16 15 C 0.17 4.07 6.64 -39.13 -0.26 3.81 16 16 O -0.18 -5.01 9.76 0.05 0.00 -5.01 16 17 C -0.39 -10.80 9.44 30.89 0.29 -10.51 16 18 H 0.09 2.26 5.30 -52.49 -0.28 1.98 16 19 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 20 N -0.86 -25.10 13.67 55.48 0.76 -24.34 16 21 Si 0.94 20.18 29.55 -169.99 -5.02 15.15 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 25 C -0.26 -5.53 9.04 -39.20 -0.35 -5.88 16 26 C -0.06 -0.69 9.69 -39.61 -0.38 -1.07 16 27 C -0.21 -2.15 9.04 -39.43 -0.36 -2.50 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 31 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 32 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.10 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.10 0.73 8.08 -51.93 -0.42 0.31 16 35 H 0.41 4.46 8.82 -40.82 -0.36 4.10 16 36 H 0.12 2.23 6.44 -52.49 -0.34 1.89 16 37 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 39 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.13 2.71 5.72 -52.49 -0.30 2.41 16 41 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.13 1.04 6.30 -52.49 -0.33 0.71 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -34.90 362.92 -7.46 -42.37 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -4.91 Total: 8.17 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -3.57 Total: -19.28 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.71 Total: -34.12 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.13 Total: -17.75 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.90 -7.46 -42.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042786509.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.343 kcal (2) G-P(sol) polarization free energy of solvation -34.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds