Wall clock time and date at job start Tue Mar 31 2020 14:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35907 * 117.00069 * 2 1 4 4 C 1.38733 * 120.05635 * 180.02562 * 3 2 1 5 5 C 1.38140 * 119.94713 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05140 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94072 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47166 * 90.00264 * 7 6 5 9 9 O 1.21287 * 119.99573 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99975 * 179.97438 * 8 7 6 11 11 C 1.39921 * 119.99877 * 174.78368 * 10 8 7 12 12 C 1.38965 * 120.03677 * 326.32563 * 11 10 8 13 13 C 1.38157 * 120.06801 * 180.02562 * 12 11 10 14 14 C 1.38169 * 120.13706 * 359.70116 * 13 12 11 15 15 C 1.38906 * 120.07315 * 0.55189 * 14 13 12 16 16 O 1.35748 * 120.03767 * 179.74321 * 15 14 13 17 17 C 1.34831 * 117.00041 * 173.82629 * 16 15 14 18 18 H 1.07995 * 120.00225 * 354.59241 * 17 16 15 19 19 C 1.38659 * 119.99714 * 174.59445 * 17 16 15 20 20 N 1.31558 * 120.00276 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99830 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47191 * 90.00132 * 21 19 17 23 23 H 1.48500 * 109.47295 * 209.99948 * 21 19 17 24 24 H 1.48507 * 109.47256 * 330.00497 * 21 19 17 25 25 C 1.38716 * 120.03490 * 146.34353 * 11 10 8 26 26 C 1.38261 * 120.11575 * 0.25564 * 6 5 4 27 27 C 1.38150 * 120.05436 * 359.45331 * 26 6 5 28 28 H 1.08992 * 109.47352 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46868 * 299.99959 * 1 2 3 30 30 H 1.08999 * 109.47122 * 59.99484 * 1 2 3 31 31 H 1.08004 * 120.02728 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.97496 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47232 * 330.00078 * 7 6 5 34 34 H 1.09002 * 109.46820 * 210.00186 * 7 6 5 35 35 H 0.96999 * 120.00281 * 354.77895 * 10 8 7 36 36 H 1.08000 * 119.96674 * 0.02638 * 12 11 10 37 37 H 1.08000 * 119.93094 * 179.97438 * 13 12 11 38 38 H 1.08006 * 119.96415 * 180.29447 * 14 13 12 39 39 H 0.96997 * 120.00343 * 179.97438 * 20 19 17 40 40 H 1.07994 * 120.06977 * 0.02562 * 25 11 10 41 41 H 1.08000 * 119.97919 * 179.70156 * 26 6 5 42 42 H 1.07994 * 120.03109 * 180.25185 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3019 3.6758 0.0016 7 6 3.9862 5.0185 0.0028 8 6 4.2136 5.4677 -1.4177 9 8 3.8548 4.7666 -2.3401 10 7 4.8146 6.6488 -1.6629 11 6 5.1243 7.0167 -2.9769 12 6 5.4877 6.0468 -3.9034 13 6 5.7941 6.4094 -5.2009 14 6 5.7344 7.7359 -5.5830 15 6 5.3769 8.7106 -4.6603 16 8 5.3235 10.0142 -5.0351 17 6 4.8474 10.8926 -4.1297 18 1 4.4488 10.5376 -3.1909 19 6 4.8697 12.2516 -4.4040 20 7 5.3548 12.6840 -5.5478 21 14 4.2094 13.4684 -3.1499 22 1 5.3066 13.8865 -2.2406 23 1 3.6683 14.6592 -3.8529 24 1 3.1286 12.8267 -2.3590 25 6 5.0692 8.3499 -3.3560 26 6 1.9212 3.6048 0.0080 27 6 1.2915 2.3752 0.0014 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 4.0209 0.3799 -0.0005 32 1 5.1346 2.5750 0.0000 33 1 4.9443 4.9376 0.5161 34 1 3.3584 5.7457 0.5177 35 1 5.0324 7.2439 -0.9285 36 1 5.5306 5.0086 -3.6090 37 1 6.0767 5.6539 -5.9191 38 1 5.9699 8.0156 -6.5993 39 1 5.3700 13.6346 -5.7399 40 1 4.7878 9.1055 -2.6376 41 1 1.3342 4.5114 0.0141 42 1 0.2130 2.3202 0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042786509.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:02 Heat of formation + Delta-G solvation = -67.102222 kcal Electronic energy + Delta-G solvation = -25891.000471 eV Core-core repulsion = 21994.423224 eV Total energy + Delta-G solvation = -3896.577247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65157 -40.99438 -40.28486 -38.61607 -37.91046 -35.59891 -34.23210 -33.29404 -32.00985 -31.02537 -30.31529 -28.83737 -27.51285 -27.12195 -23.91132 -23.57917 -23.47782 -22.25406 -21.25759 -19.77665 -19.31691 -19.07406 -18.06309 -17.34313 -17.26980 -16.81660 -16.63499 -16.37494 -16.25582 -15.83736 -15.77219 -15.49244 -15.25851 -14.91280 -14.66291 -14.54596 -14.40138 -14.15207 -13.56355 -13.45859 -13.28820 -12.95769 -12.82680 -12.73031 -12.61239 -12.49481 -12.39392 -12.10212 -11.94205 -11.70860 -11.48728 -11.22441 -10.88302 -10.68176 -9.92949 -9.34260 -9.06695 -8.85940 -8.45449 -6.14281 0.37408 0.41886 0.44536 0.70134 1.36947 1.46005 1.54521 1.68020 2.10400 2.19295 2.38967 2.83704 2.84912 3.18021 3.49959 3.69849 3.83807 3.94230 3.98625 4.16947 4.23190 4.33801 4.37243 4.39626 4.43470 4.45913 4.58976 4.64487 4.68153 4.73672 4.76574 4.81548 5.03080 5.09762 5.11842 5.29064 5.38401 5.41470 5.50342 5.64386 5.67649 5.67932 5.83042 6.02500 6.18684 6.44352 6.53055 6.98751 7.19949 7.78658 8.77568 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019630 B = 0.002266 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.046572 B =12353.570280 C =13071.665263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.110 3.890 4 C -0.167 4.167 5 C -0.071 4.071 6 C -0.115 4.115 7 C -0.085 4.085 8 C 0.510 3.490 9 O -0.553 6.553 10 N -0.663 5.663 11 C 0.190 3.810 12 C -0.200 4.200 13 C -0.054 4.054 14 C -0.216 4.216 15 C 0.133 3.867 16 O -0.227 6.227 17 C -0.412 4.412 18 H 0.103 0.897 19 C -0.024 4.024 20 N -0.920 5.920 21 Si 1.019 2.981 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.252 1.252 25 C -0.260 4.260 26 C -0.077 4.077 27 C -0.215 4.215 28 H 0.119 0.881 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.425 0.575 36 H 0.129 0.871 37 H 0.151 0.849 38 H 0.117 0.883 39 H 0.272 0.728 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.383 -20.181 17.939 27.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.065 3.935 4 C -0.185 4.185 5 C -0.089 4.089 6 C -0.116 4.116 7 C -0.124 4.124 8 C 0.300 3.700 9 O -0.430 6.430 10 N -0.310 5.310 11 C 0.095 3.905 12 C -0.221 4.221 13 C -0.072 4.072 14 C -0.236 4.236 15 C 0.082 3.918 16 O -0.133 6.133 17 C -0.488 4.488 18 H 0.120 0.880 19 C -0.221 4.221 20 N -0.558 5.558 21 Si 0.839 3.161 22 H -0.186 1.186 23 H -0.200 1.200 24 H -0.175 1.175 25 C -0.282 4.282 26 C -0.095 4.095 27 C -0.233 4.233 28 H 0.137 0.863 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.150 0.850 35 H 0.263 0.737 36 H 0.147 0.853 37 H 0.169 0.831 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.486 -20.621 17.040 27.526 hybrid contribution -0.347 1.198 0.175 1.259 sum -6.834 -19.423 17.214 26.838 Atomic orbital electron populations 1.23312 0.76655 1.05503 1.02066 1.86031 1.23326 1.26992 1.88779 1.19273 0.92851 0.84607 0.96761 1.20622 0.91676 0.99261 1.06977 1.21067 1.00704 0.90850 0.96308 1.19392 0.93682 0.94414 1.04120 1.20674 1.05153 0.95379 0.91212 1.21524 0.75636 0.79814 0.93068 1.90737 1.49862 1.54633 1.47756 1.43558 1.59676 1.21142 1.06602 1.17448 0.95501 0.91831 0.85735 1.20841 1.08084 0.99078 0.94096 1.20908 0.96020 0.94242 0.96039 1.20462 1.11549 0.92326 0.99279 1.19621 0.93650 0.85323 0.93235 1.83985 1.74405 1.13116 1.41826 1.21792 1.40333 0.86886 0.99764 0.87970 1.26614 0.97143 0.98566 0.99809 1.70188 1.45103 1.15949 1.24548 0.84576 0.78800 0.76295 0.76474 1.18552 1.19956 1.17550 1.20868 1.14551 0.95955 0.96828 1.21069 0.94278 0.97756 0.96369 1.21411 1.00944 0.92107 1.08859 0.86266 0.91530 0.92394 0.84451 0.83745 0.84425 0.84973 0.73650 0.85289 0.83130 0.86463 0.91863 0.85114 0.84673 0.83913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.65 10.50 -92.50 -0.97 -7.62 16 3 C 0.11 2.34 6.69 22.51 0.15 2.49 16 4 C -0.17 -3.41 9.99 22.36 0.22 -3.19 16 5 C -0.07 -1.36 9.69 22.25 0.22 -1.14 16 6 C -0.12 -2.20 4.37 -19.85 -0.09 -2.29 16 7 C -0.09 -1.25 5.83 29.10 0.17 -1.08 16 8 C 0.51 12.78 7.56 87.66 0.66 13.44 16 9 O -0.55 -18.94 13.74 -3.05 -0.04 -18.98 16 10 N -0.66 -17.26 5.34 -303.56 -1.62 -18.88 16 11 C 0.19 6.87 6.27 38.14 0.24 7.11 16 12 C -0.20 -7.32 8.65 22.42 0.19 -7.13 16 13 C -0.05 -1.97 10.03 22.23 0.22 -1.74 16 14 C -0.22 -9.49 9.99 22.41 0.22 -9.26 16 15 C 0.13 6.64 6.64 22.56 0.15 6.79 16 16 O -0.23 -13.53 9.76 -22.73 -0.22 -13.75 16 17 C -0.41 -23.42 9.44 67.92 0.64 -22.78 16 18 H 0.10 5.26 5.30 -2.91 -0.02 5.24 16 19 C -0.02 -1.32 5.49 84.83 0.47 -0.86 16 20 N -0.92 -55.82 13.67 21.61 0.30 -55.53 16 21 Si 1.02 41.59 29.55 68.60 2.03 43.62 16 22 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 25 C -0.26 -11.17 9.04 22.51 0.20 -10.96 16 26 C -0.08 -1.49 9.69 22.25 0.22 -1.28 16 27 C -0.21 -4.16 9.04 22.37 0.20 -3.95 16 28 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.59 7.66 -2.39 -0.02 0.58 16 30 H 0.06 0.63 7.66 -2.39 -0.02 0.62 16 31 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.14 1.17 8.08 -2.39 -0.02 1.15 16 34 H 0.13 1.24 8.08 -2.39 -0.02 1.22 16 35 H 0.42 7.87 8.82 -92.71 -0.82 7.05 16 36 H 0.13 4.53 6.44 -2.91 -0.02 4.51 16 37 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 38 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 39 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 40 H 0.13 5.45 5.72 -2.91 -0.02 5.44 16 41 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 42 H 0.14 2.12 6.30 -2.91 -0.02 2.10 16 Total: -1.00 -79.74 362.92 4.93 -74.82 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: 0.25 Total: 30.84 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 5.21 Total: -34.52 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -1.32 Total: -74.41 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -1.23 Total: -40.35 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -79.74 4.93 -74.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042786509.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.717 kcal (2) G-P(sol) polarization free energy of solvation -79.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds