Wall clock time and date at job start Tue Mar 31 2020 14:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00436 * 2 1 4 4 C 1.50696 * 109.47433 * 180.02562 * 3 2 1 5 5 C 1.38361 * 119.85206 * 89.99924 * 4 3 2 6 6 C 1.37960 * 120.14481 * 179.97438 * 5 4 3 7 7 C 1.39593 * 119.84943 * 0.30131 * 6 5 4 8 8 C 1.47812 * 120.14455 * 179.72095 * 7 6 5 9 9 O 1.21564 * 119.99583 * 0.02562 * 8 7 6 10 10 N 1.34767 * 120.00064 * 179.97438 * 8 7 6 11 11 C 1.39851 * 119.99978 * 174.78242 * 10 8 7 12 12 C 1.38987 * 120.03650 * 326.13427 * 11 10 8 13 13 C 1.38146 * 120.06382 * 179.79270 * 12 11 10 14 14 C 1.38175 * 120.14246 * 0.46291 * 13 12 11 15 15 C 1.38909 * 120.07423 * 359.78894 * 14 13 12 16 16 O 1.35746 * 120.03492 * 179.97438 * 15 14 13 17 17 C 1.34828 * 117.00160 * 185.92782 * 16 15 14 18 18 H 1.08003 * 120.00133 * 5.40301 * 17 16 15 19 19 C 1.38661 * 120.00336 * 185.40266 * 17 16 15 20 20 N 1.31558 * 119.99304 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00338 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47630 * 89.99798 * 21 19 17 23 23 H 1.48503 * 109.47214 * 210.00159 * 21 19 17 24 24 H 1.48504 * 109.47176 * 329.99564 * 21 19 17 25 25 C 1.38730 * 120.03839 * 146.41389 * 11 10 8 26 26 C 1.39594 * 119.70927 * 359.44645 * 7 6 5 27 27 C 1.37952 * 119.85019 * 0.53120 * 26 7 6 28 28 H 1.08999 * 109.47536 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47345 * 300.00147 * 1 2 3 30 30 H 1.09000 * 109.46948 * 60.00086 * 1 2 3 31 31 H 1.09003 * 109.46595 * 59.99840 * 3 2 1 32 32 H 1.08999 * 109.47227 * 300.00302 * 3 2 1 33 33 H 1.07999 * 119.92600 * 359.97438 * 5 4 3 34 34 H 1.07996 * 120.07018 * 180.02562 * 6 5 4 35 35 H 0.96994 * 120.00371 * 354.78277 * 10 8 7 36 36 H 1.08005 * 119.96517 * 0.02562 * 12 11 10 37 37 H 1.08007 * 119.92915 * 180.23200 * 13 12 11 38 38 H 1.07997 * 119.96009 * 179.77051 * 14 13 12 39 39 H 0.97000 * 119.99357 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.07108 * 359.94884 * 25 11 10 41 41 H 1.08001 * 120.07241 * 180.25308 * 26 7 6 42 42 H 1.08003 * 119.92471 * 179.72231 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.1986 1.1322 -1.2010 6 6 5.5739 1.0238 -1.2086 7 6 6.2728 0.9624 -0.0017 8 6 7.7458 0.8400 -0.0023 9 8 8.3513 0.7930 -1.0554 10 7 8.4176 0.7815 1.1645 11 6 9.7978 0.5562 1.1662 12 6 10.3708 -0.2597 0.1979 13 6 11.7347 -0.4792 0.1965 14 6 12.5322 0.1036 1.1626 15 6 11.9651 0.9160 2.1363 16 8 12.7493 1.4877 3.0854 17 6 12.1240 2.1628 4.0709 18 1 11.0456 2.1568 4.1296 19 6 12.8654 2.8648 5.0091 20 7 14.1791 2.8717 4.9378 21 14 11.9992 3.7995 6.3748 22 1 11.8207 2.9079 7.5488 23 1 12.8174 4.9754 6.7660 24 1 10.6708 4.2584 5.8951 25 6 10.5959 1.1424 2.1379 26 6 5.5748 1.0229 1.2057 27 6 4.1996 1.1318 1.1992 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.6563 1.1749 -2.1339 34 1 6.1083 0.9820 -2.1462 35 1 7.9438 0.8956 2.0032 36 1 9.7495 -0.7197 -0.5564 37 1 12.1781 -1.1106 -0.5593 38 1 13.5977 -0.0729 1.1609 39 1 14.6978 3.3624 5.5943 40 1 10.1527 1.7739 2.8936 41 1 6.1099 0.9801 2.1428 42 1 3.6580 1.1742 2.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049293631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:18 Heat of formation + Delta-G solvation = -48.101670 kcal Electronic energy + Delta-G solvation = -25724.118567 eV Core-core repulsion = 21828.365245 eV Total energy + Delta-G solvation = -3895.753321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.62451 -39.42890 -38.58943 -37.74933 -36.39752 -34.37305 -32.55927 -32.20777 -31.30065 -29.43498 -28.70573 -27.69480 -26.02224 -25.29591 -23.26938 -22.98377 -21.83074 -21.48007 -20.03630 -18.47253 -17.94719 -17.22122 -16.85840 -16.51458 -16.33344 -15.68278 -15.25028 -15.20141 -14.90540 -14.74964 -14.53750 -14.16733 -14.01803 -13.82241 -13.58198 -13.40478 -12.96536 -12.87995 -12.73107 -12.37589 -12.01426 -11.79647 -11.67155 -11.51499 -11.37404 -11.15553 -10.96051 -10.82611 -10.46905 -10.18460 -9.97110 -9.66473 -9.43829 -9.29114 -9.19007 -8.81785 -7.74846 -7.16785 -6.45764 -4.05450 0.47588 1.07986 2.01073 2.37148 2.75879 3.10960 3.11378 3.16193 3.17562 3.40718 3.77942 3.94893 4.36565 4.37740 4.54320 4.61299 4.67948 4.79381 4.82857 4.91535 4.93146 5.06988 5.09356 5.22404 5.26464 5.28219 5.46486 5.67142 5.70321 5.94614 5.98520 6.05296 6.05644 6.16468 6.22211 6.28105 6.53592 6.62348 6.64307 6.95616 6.96882 7.10848 7.29953 7.40855 7.65682 7.78950 7.98192 8.24690 8.99504 9.69945 10.72258 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.002449 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.567104 B =11430.655195 C =13054.499711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.099 3.901 4 C -0.072 4.072 5 C -0.106 4.106 6 C -0.061 4.061 7 C -0.122 4.122 8 C 0.554 3.446 9 O -0.515 6.515 10 N -0.663 5.663 11 C 0.179 3.821 12 C -0.205 4.205 13 C -0.063 4.063 14 C -0.199 4.199 15 C 0.168 3.832 16 O -0.176 6.176 17 C -0.392 4.392 18 H 0.090 0.910 19 C 0.039 3.961 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.268 1.268 25 C -0.255 4.255 26 C -0.088 4.088 27 C -0.105 4.105 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.406 0.594 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.270 0.730 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.219 -3.104 -7.606 26.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C 0.023 3.977 4 C -0.072 4.072 5 C -0.124 4.124 6 C -0.080 4.080 7 C -0.125 4.125 8 C 0.342 3.658 9 O -0.391 6.391 10 N -0.308 5.308 11 C 0.087 3.913 12 C -0.225 4.225 13 C -0.082 4.082 14 C -0.219 4.219 15 C 0.114 3.886 16 O -0.079 6.079 17 C -0.468 4.468 18 H 0.107 0.893 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.276 4.276 26 C -0.107 4.107 27 C -0.123 4.123 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.158 0.842 35 H 0.242 0.758 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.080 0.920 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -24.267 -3.193 -8.194 25.812 hybrid contribution -0.977 0.874 1.206 1.782 sum -25.244 -2.318 -6.987 26.296 Atomic orbital electron populations 1.22781 0.80749 1.03039 1.00082 1.87988 1.19788 1.27149 1.95428 1.21397 0.89649 0.85343 1.01281 1.19775 0.94179 0.99631 0.93643 1.21028 0.93844 0.99814 0.97741 1.21286 0.93678 0.95117 0.97923 1.20019 0.92805 1.05032 0.94628 1.18295 0.86925 0.76710 0.83871 1.90797 1.69280 1.48111 1.30884 1.43376 1.07498 1.70866 1.09015 1.17386 0.81136 0.95864 0.96956 1.20545 0.95327 1.04418 1.02240 1.20532 0.92806 0.97956 0.96864 1.20261 1.00053 1.03739 0.97823 1.19075 0.89095 0.91458 0.88983 1.84020 1.33156 1.59685 1.31039 1.21260 0.92284 1.29592 1.03686 0.89281 1.25284 0.95637 0.97049 0.98562 1.70038 1.04685 1.39726 1.35174 0.85724 0.78818 0.78890 0.80036 1.19887 1.20259 1.19299 1.20816 0.93823 1.08516 1.04489 1.21353 0.94485 0.97592 0.97254 1.20976 0.93822 0.99671 0.97798 0.89397 0.93916 0.93929 0.92073 0.92096 0.85172 0.84224 0.75815 0.86333 0.86528 0.86315 0.92014 0.85215 0.85166 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.33 10.69 -35.23 -0.38 -3.71 16 3 C 0.10 0.70 6.05 36.00 0.22 0.92 16 4 C -0.07 -0.64 5.52 -104.53 -0.58 -1.22 16 5 C -0.11 -0.98 9.68 -39.64 -0.38 -1.37 16 6 C -0.06 -0.69 9.60 -39.18 -0.38 -1.07 16 7 C -0.12 -1.51 5.87 -104.97 -0.62 -2.13 16 8 C 0.55 8.74 7.51 -12.35 -0.09 8.64 16 9 O -0.51 -9.76 14.06 5.31 0.07 -9.68 16 10 N -0.66 -10.41 5.28 -10.74 -0.06 -10.47 16 11 C 0.18 3.50 6.26 -83.74 -0.52 2.97 16 12 C -0.20 -4.00 8.65 -39.34 -0.34 -4.34 16 13 C -0.06 -1.20 10.03 -39.64 -0.40 -1.59 16 14 C -0.20 -4.30 9.99 -39.36 -0.39 -4.69 16 15 C 0.17 4.09 6.64 -39.13 -0.26 3.83 16 16 O -0.18 -4.99 9.76 0.07 0.00 -4.99 16 17 C -0.39 -10.81 9.44 30.89 0.29 -10.52 16 18 H 0.09 2.25 5.30 -52.48 -0.28 1.97 16 19 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -25.12 13.67 55.48 0.76 -24.36 16 21 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 C -0.25 -5.55 9.04 -39.20 -0.35 -5.91 16 26 C -0.09 -0.89 9.54 -39.18 -0.37 -1.26 16 27 C -0.10 -0.93 9.68 -39.64 -0.38 -1.31 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 32 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.14 1.56 7.65 -52.49 -0.40 1.16 16 35 H 0.41 5.04 6.87 -40.82 -0.28 4.76 16 36 H 0.12 2.26 6.45 -52.48 -0.34 1.92 16 37 H 0.12 1.85 8.06 -52.48 -0.42 1.42 16 38 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 39 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.13 2.76 5.71 -52.49 -0.30 2.46 16 41 H 0.13 1.06 6.42 -52.49 -0.34 0.72 16 42 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -34.09 363.87 -7.56 -41.65 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -4.87 Total: 7.68 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -3.55 Total: -16.80 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.70 Total: -34.83 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.30 Total: -18.38 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.09 -7.56 -41.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049293631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.452 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds