Wall clock time and date at job start Tue Mar 31 2020 14:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00436 * 2 1 4 4 C 1.50696 * 109.47433 * 180.02562 * 3 2 1 5 5 C 1.38361 * 119.85206 * 89.99924 * 4 3 2 6 6 C 1.37960 * 120.14481 * 179.97438 * 5 4 3 7 7 C 1.39593 * 119.84943 * 0.30131 * 6 5 4 8 8 C 1.47812 * 120.14455 * 179.72095 * 7 6 5 9 9 O 1.21564 * 119.99583 * 0.02562 * 8 7 6 10 10 N 1.34767 * 120.00064 * 179.97438 * 8 7 6 11 11 C 1.39851 * 119.99978 * 174.78242 * 10 8 7 12 12 C 1.38987 * 120.03650 * 326.13427 * 11 10 8 13 13 C 1.38146 * 120.06382 * 179.79270 * 12 11 10 14 14 C 1.38175 * 120.14246 * 0.46291 * 13 12 11 15 15 C 1.38909 * 120.07423 * 359.78894 * 14 13 12 16 16 O 1.35746 * 120.03492 * 179.97438 * 15 14 13 17 17 C 1.34828 * 117.00160 * 185.92782 * 16 15 14 18 18 H 1.08003 * 120.00133 * 5.40301 * 17 16 15 19 19 C 1.38661 * 120.00336 * 185.40266 * 17 16 15 20 20 N 1.31558 * 119.99304 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00338 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47630 * 89.99798 * 21 19 17 23 23 H 1.48503 * 109.47214 * 210.00159 * 21 19 17 24 24 H 1.48504 * 109.47176 * 329.99564 * 21 19 17 25 25 C 1.38730 * 120.03839 * 146.41389 * 11 10 8 26 26 C 1.39594 * 119.70927 * 359.44645 * 7 6 5 27 27 C 1.37952 * 119.85019 * 0.53120 * 26 7 6 28 28 H 1.08999 * 109.47536 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47345 * 300.00147 * 1 2 3 30 30 H 1.09000 * 109.46948 * 60.00086 * 1 2 3 31 31 H 1.09003 * 109.46595 * 59.99840 * 3 2 1 32 32 H 1.08999 * 109.47227 * 300.00302 * 3 2 1 33 33 H 1.07999 * 119.92600 * 359.97438 * 5 4 3 34 34 H 1.07996 * 120.07018 * 180.02562 * 6 5 4 35 35 H 0.96994 * 120.00371 * 354.78277 * 10 8 7 36 36 H 1.08005 * 119.96517 * 0.02562 * 12 11 10 37 37 H 1.08007 * 119.92915 * 180.23200 * 13 12 11 38 38 H 1.07997 * 119.96009 * 179.77051 * 14 13 12 39 39 H 0.97000 * 119.99357 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.07108 * 359.94884 * 25 11 10 41 41 H 1.08001 * 120.07241 * 180.25308 * 26 7 6 42 42 H 1.08003 * 119.92471 * 179.72231 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.1986 1.1322 -1.2010 6 6 5.5739 1.0238 -1.2086 7 6 6.2728 0.9624 -0.0017 8 6 7.7458 0.8400 -0.0023 9 8 8.3513 0.7930 -1.0554 10 7 8.4176 0.7815 1.1645 11 6 9.7978 0.5562 1.1662 12 6 10.3708 -0.2597 0.1979 13 6 11.7347 -0.4792 0.1965 14 6 12.5322 0.1036 1.1626 15 6 11.9651 0.9160 2.1363 16 8 12.7493 1.4877 3.0854 17 6 12.1240 2.1628 4.0709 18 1 11.0456 2.1568 4.1296 19 6 12.8654 2.8648 5.0091 20 7 14.1791 2.8717 4.9378 21 14 11.9992 3.7995 6.3748 22 1 11.8207 2.9079 7.5488 23 1 12.8174 4.9754 6.7660 24 1 10.6708 4.2584 5.8951 25 6 10.5959 1.1424 2.1379 26 6 5.5748 1.0229 1.2057 27 6 4.1996 1.1318 1.1992 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.6563 1.1749 -2.1339 34 1 6.1083 0.9820 -2.1462 35 1 7.9438 0.8956 2.0032 36 1 9.7495 -0.7197 -0.5564 37 1 12.1781 -1.1106 -0.5593 38 1 13.5977 -0.0729 1.1609 39 1 14.6978 3.3624 5.5943 40 1 10.1527 1.7739 2.8936 41 1 6.1099 0.9801 2.1428 42 1 3.6580 1.1742 2.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049293631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:17 Heat of formation + Delta-G solvation = -69.876131 kcal Electronic energy + Delta-G solvation = -25725.062778 eV Core-core repulsion = 21828.365245 eV Total energy + Delta-G solvation = -3896.697533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.84996 -40.67732 -39.89349 -38.48707 -38.00979 -35.82215 -34.25242 -33.32138 -32.08077 -30.99887 -30.28081 -28.41507 -27.31523 -26.56848 -24.38202 -23.77169 -23.49958 -22.66814 -21.34701 -19.92604 -19.56168 -18.75923 -17.43647 -17.35073 -17.12079 -16.88084 -16.74048 -16.50408 -16.24392 -15.84120 -15.76126 -15.52006 -15.46517 -15.21211 -14.63506 -14.52937 -14.29051 -14.18173 -13.66886 -13.53277 -13.25159 -13.14781 -12.83020 -12.63056 -12.53977 -12.49309 -12.19348 -12.11794 -12.08624 -11.49628 -11.36411 -11.01396 -10.73709 -10.64560 -10.03462 -10.00591 -9.38792 -8.90712 -8.46228 -6.15048 -0.40556 0.34033 0.43953 0.67589 1.36497 1.45877 1.54047 1.67784 1.90936 2.18385 2.60504 2.83580 3.13587 3.16043 3.46759 3.50010 3.72168 3.87969 3.94120 4.09612 4.19150 4.29242 4.30400 4.41468 4.44269 4.53928 4.59099 4.60771 4.62893 4.67382 4.74663 4.90986 4.98260 5.00071 5.10595 5.19089 5.23863 5.37327 5.44285 5.46609 5.63576 5.64902 5.80574 6.01145 6.13231 6.20033 6.35651 6.97203 6.98282 7.76833 8.76658 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.002449 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.567104 B =11430.655195 C =13054.499711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.097 3.903 4 C -0.070 4.070 5 C -0.107 4.107 6 C -0.072 4.072 7 C -0.144 4.144 8 C 0.555 3.445 9 O -0.553 6.553 10 N -0.656 5.656 11 C 0.185 3.815 12 C -0.201 4.201 13 C -0.051 4.051 14 C -0.212 4.212 15 C 0.135 3.865 16 O -0.225 6.225 17 C -0.413 4.413 18 H 0.104 0.896 19 C -0.023 4.023 20 N -0.919 5.919 21 Si 1.019 2.981 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.251 1.251 25 C -0.258 4.258 26 C -0.086 4.086 27 C -0.106 4.106 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.151 0.849 34 H 0.132 0.868 35 H 0.421 0.579 36 H 0.129 0.871 37 H 0.156 0.844 38 H 0.121 0.879 39 H 0.273 0.727 40 H 0.131 0.869 41 H 0.147 0.853 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.121 -3.090 -7.584 30.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.022 3.978 4 C -0.070 4.070 5 C -0.125 4.125 6 C -0.091 4.091 7 C -0.147 4.147 8 C 0.346 3.654 9 O -0.431 6.431 10 N -0.302 5.302 11 C 0.091 3.909 12 C -0.221 4.221 13 C -0.069 4.069 14 C -0.231 4.231 15 C 0.084 3.916 16 O -0.131 6.131 17 C -0.489 4.489 18 H 0.121 0.879 19 C -0.221 4.221 20 N -0.557 5.557 21 Si 0.838 3.162 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.174 1.174 25 C -0.280 4.280 26 C -0.105 4.105 27 C -0.123 4.123 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.169 0.831 34 H 0.150 0.850 35 H 0.261 0.739 36 H 0.146 0.854 37 H 0.173 0.827 38 H 0.139 0.861 39 H 0.082 0.918 40 H 0.149 0.851 41 H 0.165 0.835 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -28.235 -3.204 -8.192 29.574 hybrid contribution 0.018 0.720 0.952 1.193 sum -28.217 -2.484 -7.240 29.237 Atomic orbital electron populations 1.22945 0.79158 1.03798 1.01213 1.87935 1.21602 1.27998 1.95691 1.21503 0.88139 0.85210 1.02987 1.20146 0.95597 0.97806 0.93441 1.21259 0.92993 0.99120 0.99096 1.21347 0.94671 0.95687 0.97349 1.19813 0.90542 1.08135 0.96173 1.18847 0.88311 0.75254 0.82977 1.90765 1.70361 1.49927 1.32061 1.43335 1.05996 1.70638 1.10206 1.17434 0.82846 0.94793 0.95874 1.20859 0.95757 1.03582 1.01920 1.20923 0.92470 0.97073 0.96432 1.20499 1.00716 1.03857 0.98055 1.19591 0.90238 0.92357 0.89432 1.83988 1.34854 1.61665 1.32606 1.21804 0.93185 1.29746 1.04155 0.87911 1.26619 0.96414 0.97835 1.01240 1.70191 1.06726 1.41792 1.36971 0.84578 0.78083 0.77230 0.76278 1.18687 1.19904 1.17406 1.20838 0.93180 1.08760 1.05175 1.21555 0.95201 0.96767 0.96958 1.21305 0.93363 0.98671 0.98997 0.88949 0.92760 0.92801 0.90318 0.90534 0.83088 0.85000 0.73931 0.85352 0.82686 0.86054 0.91843 0.85130 0.83508 0.82666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 11.01 113.37 1.25 1.44 16 2 O -0.41 -5.97 10.69 -148.98 -1.59 -7.56 16 3 C 0.10 1.04 6.05 71.23 0.43 1.47 16 4 C -0.07 -1.04 5.52 -19.81 -0.11 -1.15 16 5 C -0.11 -1.75 9.68 22.23 0.22 -1.53 16 6 C -0.07 -1.54 9.60 22.53 0.22 -1.32 16 7 C -0.14 -3.38 5.87 -20.09 -0.12 -3.50 16 8 C 0.56 17.07 7.51 86.78 0.65 17.72 16 9 O -0.55 -20.77 14.06 -3.92 -0.06 -20.83 16 10 N -0.66 -19.87 5.28 -306.18 -1.62 -21.49 16 11 C 0.18 7.08 6.26 38.16 0.24 7.32 16 12 C -0.20 -7.59 8.65 22.43 0.19 -7.40 16 13 C -0.05 -1.86 10.03 22.23 0.22 -1.64 16 14 C -0.21 -9.26 9.99 22.42 0.22 -9.04 16 15 C 0.14 6.79 6.64 22.56 0.15 6.94 16 16 O -0.22 -13.43 9.76 -22.67 -0.22 -13.65 16 17 C -0.41 -23.57 9.44 67.92 0.64 -22.93 16 18 H 0.10 5.30 5.30 -2.91 -0.02 5.29 16 19 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 20 N -0.92 -55.90 13.67 21.62 0.30 -55.61 16 21 Si 1.02 41.80 29.55 68.60 2.03 43.83 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 25 C -0.26 -11.36 9.04 22.52 0.20 -11.16 16 26 C -0.09 -1.53 9.54 22.53 0.21 -1.31 16 27 C -0.11 -1.55 9.68 22.23 0.22 -1.33 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.28 8.14 -2.39 -0.02 0.27 16 30 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 32 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 33 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 34 H 0.13 2.95 7.65 -2.91 -0.02 2.92 16 35 H 0.42 9.82 6.87 -92.71 -0.64 9.18 16 36 H 0.13 4.69 6.45 -2.91 -0.02 4.67 16 37 H 0.16 4.48 8.06 -2.91 -0.02 4.46 16 38 H 0.12 5.13 8.06 -2.91 -0.02 5.11 16 39 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 40 H 0.13 5.61 5.71 -2.91 -0.02 5.59 16 41 H 0.15 1.99 6.42 -2.91 -0.02 1.97 16 42 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -77.53 363.87 4.57 -72.96 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.43 Total: 30.61 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 5.31 Total: -28.25 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -1.32 Total: -77.10 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -1.87 Total: -42.04 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -77.53 4.57 -72.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049293631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.081 kcal (2) G-P(sol) polarization free energy of solvation -77.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds