Wall clock time and date at job start Tue Mar 31 2020 14:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35992 * 116.99458 * 2 1 4 4 C 1.38560 * 120.07725 * 359.97438 * 3 2 1 5 5 C 1.38249 * 120.00080 * 180.02562 * 4 3 2 6 6 C 1.38249 * 120.14743 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.14645 * 359.97438 * 6 5 4 8 8 C 1.38572 * 119.99587 * 359.72243 * 7 6 5 9 9 O 1.35996 * 120.06796 * 180.27813 * 8 7 6 10 10 C 1.42897 * 117.00429 * 0.27475 * 9 8 7 11 11 C 1.50705 * 109.46960 * 180.02562 * 10 9 8 12 12 O 1.21278 * 120.00170 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99493 * 180.02562 * 11 10 9 14 14 C 1.37134 * 120.00038 * 354.94974 * 13 11 10 15 15 H 1.08000 * 120.00408 * 332.87404 * 14 13 11 16 16 C 1.38894 * 119.99601 * 152.87042 * 14 13 11 17 17 N 1.31425 * 119.99889 * 157.86566 * 16 14 13 18 18 Si 1.86800 * 120.00027 * 337.86213 * 16 14 13 19 19 H 1.48503 * 109.47044 * 85.74198 * 18 16 14 20 20 H 1.48496 * 109.47139 * 205.73997 * 18 16 14 21 21 H 1.48491 * 109.47169 * 325.74371 * 18 16 14 22 22 C 1.39787 * 119.99441 * 174.95341 * 13 11 10 23 23 C 1.38958 * 120.07855 * 297.86259 * 22 13 11 24 24 C 1.38084 * 119.91905 * 179.79295 * 23 22 13 25 25 C 1.38308 * 120.07990 * 0.46752 * 24 23 22 26 26 C 1.38307 * 120.15657 * 359.78434 * 25 24 23 27 27 C 1.38084 * 120.07425 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.46982 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47385 * 299.99567 * 1 2 3 30 30 H 1.08993 * 109.47482 * 60.00409 * 1 2 3 31 31 H 1.08005 * 120.00196 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.92632 * 179.97438 * 5 4 3 33 33 H 1.07998 * 119.92755 * 179.97438 * 6 5 4 34 34 H 1.07995 * 120.00285 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.47180 * 300.00410 * 10 9 8 36 36 H 1.08995 * 109.47177 * 60.00317 * 10 9 8 37 37 H 0.96999 * 119.99678 * 179.97438 * 17 16 14 38 38 H 1.07996 * 120.03927 * 0.02562 * 23 22 13 39 39 H 1.08002 * 119.96123 * 180.25796 * 24 23 22 40 40 H 1.07996 * 119.91982 * 179.76672 * 25 24 23 41 41 H 1.08001 * 119.96120 * 179.97438 * 26 25 24 42 42 H 1.08008 * 120.03646 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9223 3.6058 -0.0011 6 6 3.3028 3.6800 -0.0016 7 6 4.0602 2.5235 -0.0011 8 6 3.4358 1.2865 0.0058 9 8 4.1795 0.1479 0.0121 10 6 5.6003 0.3009 0.0172 11 6 6.2518 -1.0580 0.0231 12 8 5.5670 -2.0589 0.0224 13 7 7.5957 -1.1609 0.0291 14 6 8.3701 -0.0339 -0.0747 15 1 7.9871 0.8399 -0.5809 16 6 9.6471 -0.0162 0.4714 17 7 10.5396 0.8405 0.0278 18 14 10.0959 -1.2098 1.8363 19 1 10.5390 -2.4969 1.2425 20 1 11.1958 -0.6369 2.6531 21 1 8.9098 -1.4448 2.6983 22 6 8.2000 -2.4164 0.1411 23 6 7.9969 -3.1881 1.2787 24 6 8.5919 -4.4297 1.3839 25 6 9.3971 -4.9013 0.3631 26 6 9.6057 -4.1337 -0.7684 27 6 9.0098 -2.8933 -0.8826 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 0.2144 2.3196 -0.0014 32 1 1.3340 4.5115 -0.0019 33 1 3.7905 4.6435 -0.0024 34 1 5.1384 2.5842 -0.0011 35 1 5.9100 0.8482 -0.8731 36 1 5.9030 0.8532 0.9068 37 1 11.4313 0.8531 0.4094 38 1 7.3713 -2.8189 2.0778 39 1 8.4311 -5.0318 2.2660 40 1 9.8642 -5.8712 0.4497 41 1 10.2353 -4.5049 -1.5635 42 1 9.1734 -2.2942 -1.7662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057624888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:07 Heat of formation + Delta-G solvation = -45.074279 kcal Electronic energy + Delta-G solvation = -27354.928080 eV Core-core repulsion = 23459.306036 eV Total energy + Delta-G solvation = -3895.622044 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.83760 -41.32692 -39.78969 -38.94109 -37.71834 -36.80978 -34.15287 -31.91873 -31.81049 -31.28206 -30.83759 -28.82048 -28.05310 -27.00311 -24.10950 -23.55094 -23.23783 -22.82835 -21.03414 -19.92515 -19.69772 -18.30782 -17.98415 -17.70870 -17.38397 -17.24370 -16.97850 -16.60291 -16.14482 -15.91143 -15.69511 -15.61780 -15.31725 -14.92649 -14.79297 -14.69359 -14.35597 -14.20148 -14.01959 -13.51325 -13.47225 -12.99520 -12.88865 -12.65133 -12.48977 -12.26260 -12.21293 -12.10208 -12.00791 -11.97685 -11.83845 -11.26383 -10.75564 -10.37487 -9.85116 -9.73068 -9.42809 -8.82977 -8.63491 -6.22848 0.29004 0.30534 0.43352 0.45811 1.22689 1.34419 1.40020 1.62460 1.72542 2.19078 2.40232 2.71078 2.76476 2.79980 3.00049 3.72820 3.89761 3.96914 4.01822 4.05544 4.09533 4.15727 4.19824 4.24103 4.33341 4.40590 4.45660 4.50074 4.51798 4.63078 4.66977 4.71528 4.76284 5.07297 5.22758 5.26438 5.35094 5.46371 5.53325 5.53683 5.55646 5.77244 5.84148 5.95307 6.06978 6.25834 6.62307 6.77127 7.18022 7.53077 8.46594 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.003617 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.006676 B = 7739.941522 C = 8934.004511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.074 3.926 4 C -0.169 4.169 5 C -0.113 4.113 6 C -0.116 4.116 7 C -0.183 4.183 8 C 0.064 3.936 9 O -0.315 6.315 10 C 0.075 3.925 11 C 0.473 3.527 12 O -0.591 6.591 13 N -0.423 5.423 14 C -0.362 4.362 15 H 0.104 0.896 16 C 0.054 3.946 17 N -0.877 5.877 18 Si 0.904 3.096 19 H -0.241 1.241 20 H -0.293 1.293 21 H -0.269 1.269 22 C 0.123 3.877 23 C -0.150 4.150 24 C -0.117 4.117 25 C -0.126 4.126 26 C -0.110 4.110 27 C -0.132 4.132 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.164 0.836 32 H 0.164 0.836 33 H 0.154 0.846 34 H 0.137 0.863 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.283 0.717 38 H 0.102 0.898 39 H 0.153 0.847 40 H 0.165 0.835 41 H 0.157 0.843 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.586 1.365 0.892 11.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.029 3.971 4 C -0.187 4.187 5 C -0.131 4.131 6 C -0.134 4.134 7 C -0.202 4.202 8 C 0.018 3.982 9 O -0.229 6.229 10 C -0.003 4.003 11 C 0.264 3.736 12 O -0.475 6.475 13 N -0.140 5.140 14 C -0.487 4.487 15 H 0.122 0.878 16 C -0.154 4.154 17 N -0.512 5.512 18 Si 0.729 3.271 19 H -0.164 1.164 20 H -0.221 1.221 21 H -0.195 1.195 22 C 0.032 3.968 23 C -0.170 4.170 24 C -0.135 4.135 25 C -0.144 4.144 26 C -0.128 4.128 27 C -0.152 4.152 28 H 0.127 0.873 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.182 0.818 32 H 0.182 0.818 33 H 0.172 0.828 34 H 0.155 0.845 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.170 0.830 40 H 0.182 0.818 41 H 0.175 0.825 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.732 0.600 0.870 11.780 hybrid contribution 0.514 0.186 0.583 0.799 sum -11.219 0.787 1.453 11.339 Atomic orbital electron populations 1.23347 0.76441 1.05251 1.02552 1.86208 1.23526 1.26741 1.89221 1.18653 0.88941 0.86397 1.03097 1.21412 1.01112 0.90616 1.05600 1.21311 0.94427 0.97857 0.99484 1.21257 0.94375 0.97981 0.99836 1.21401 1.01357 0.91245 1.06174 1.18889 0.89246 0.86330 1.03697 1.86155 1.17723 1.29716 1.89325 1.22155 0.78576 0.95255 1.04322 1.20414 0.82179 0.90781 0.80226 1.90590 1.63258 1.39469 1.54171 1.41446 1.03937 1.04665 1.63971 1.19158 0.97917 0.92898 1.38739 0.87815 1.25554 0.94951 0.97377 0.97498 1.69799 1.04599 1.37481 1.39339 0.86470 0.78126 0.81334 0.81121 1.16428 1.22085 1.19454 1.17975 0.97234 0.86653 0.94955 1.21278 1.01970 0.97122 0.96604 1.21334 0.97201 0.94234 1.00721 1.21541 0.98565 1.01155 0.93108 1.21406 0.99093 0.92893 0.99409 1.21322 0.99112 0.97115 0.97660 0.87338 0.91116 0.91092 0.81826 0.81809 0.82789 0.84495 0.88667 0.88268 0.90717 0.88021 0.82951 0.81754 0.82548 0.86490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.47 16 2 O -0.34 -11.43 10.28 -79.59 -0.82 -12.25 16 3 C 0.07 2.39 6.70 22.57 0.15 2.54 16 4 C -0.17 -3.80 9.04 22.35 0.20 -3.60 16 5 C -0.11 -2.20 10.04 22.27 0.22 -1.97 16 6 C -0.12 -2.66 10.04 22.27 0.22 -2.43 16 7 C -0.18 -5.56 9.04 22.35 0.20 -5.36 16 8 C 0.06 2.33 6.70 22.57 0.15 2.49 16 9 O -0.32 -14.10 9.45 -67.09 -0.63 -14.73 16 10 C 0.07 3.22 3.90 71.24 0.28 3.50 16 11 C 0.47 24.04 7.52 87.66 0.66 24.70 16 12 O -0.59 -33.35 16.06 16.01 0.26 -33.09 16 13 N -0.42 -21.37 2.49 -458.89 -1.14 -22.51 16 14 C -0.36 -18.78 9.12 84.02 0.77 -18.02 16 15 H 0.10 5.44 6.90 -2.91 -0.02 5.42 16 16 C 0.05 2.80 5.20 84.91 0.44 3.24 16 17 N -0.88 -47.27 13.96 21.65 0.30 -46.97 16 18 Si 0.90 42.21 23.47 68.60 1.61 43.82 16 19 H -0.24 -10.67 5.26 99.48 0.52 -10.14 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 21 H -0.27 -12.87 6.11 99.48 0.61 -12.26 16 22 C 0.12 5.84 2.29 38.22 0.09 5.92 16 23 C -0.15 -6.60 5.86 22.41 0.13 -6.46 16 24 C -0.12 -4.05 9.55 22.25 0.21 -3.84 16 25 C -0.13 -3.83 9.73 22.30 0.22 -3.61 16 26 C -0.11 -3.70 9.63 22.25 0.21 -3.49 16 27 C -0.13 -5.67 8.48 22.41 0.19 -5.48 16 28 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 1.08 7.67 -2.39 -0.02 1.06 16 30 H 0.07 1.08 7.66 -2.39 -0.02 1.06 16 31 H 0.16 2.48 6.30 -2.91 -0.02 2.46 16 32 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 34 H 0.14 4.08 6.30 -2.91 -0.02 4.07 16 35 H 0.10 3.82 6.99 -2.39 -0.02 3.81 16 36 H 0.10 4.01 7.67 -2.39 -0.02 3.99 16 37 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 38 H 0.10 4.71 7.71 -2.91 -0.02 4.69 16 39 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 40 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 41 H 0.16 4.03 8.06 -2.91 -0.02 4.00 16 42 H 0.12 5.13 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -74.23 348.86 5.80 -68.43 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.76 Total: 27.71 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 5.46 Total: -10.40 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -0.84 Total: -69.48 kcal Atomic # 8 Polarization: -58.88 SS G_CDS: -1.20 Total: -60.07 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.61 Total: 43.82 kcal Total: -74.23 5.80 -68.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057624888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.359 kcal (2) G-P(sol) polarization free energy of solvation -74.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds