Wall clock time and date at job start Tue Mar 31 2020 14:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99581 * 2 1 4 4 H 1.09003 * 109.47452 * 30.00002 * 3 2 1 5 5 C 1.50697 * 109.46908 * 270.00105 * 3 2 1 6 6 O 1.21286 * 120.00503 * 354.99837 * 5 3 2 7 7 N 1.34784 * 119.99992 * 174.99961 * 5 3 2 8 8 C 1.39926 * 120.00074 * 174.78346 * 7 5 3 9 9 C 1.38962 * 120.03569 * 326.15819 * 8 7 5 10 10 C 1.38155 * 120.06461 * 179.76398 * 9 8 7 11 11 C 1.38162 * 120.14094 * 0.51102 * 10 9 8 12 12 C 1.38915 * 120.07123 * 359.74334 * 11 10 9 13 13 O 1.35745 * 120.03386 * 179.97438 * 12 11 10 14 14 C 1.34830 * 117.00003 * 185.92641 * 13 12 11 15 15 H 1.08008 * 119.99677 * 5.40406 * 14 13 12 16 16 C 1.38653 * 120.00507 * 185.40372 * 14 13 12 17 17 N 1.31564 * 119.99293 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00350 * 179.97438 * 16 14 13 19 19 H 1.48489 * 109.46924 * 60.00039 * 18 16 14 20 20 H 1.48497 * 109.47105 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46842 * 299.99943 * 18 16 14 22 22 C 1.38711 * 120.03387 * 146.43311 * 8 7 5 23 23 C 1.50703 * 109.47139 * 149.99994 * 3 2 1 24 24 C 1.38224 * 119.99852 * 39.72604 * 23 3 2 25 25 C 1.38233 * 120.00270 * 179.78625 * 24 23 3 26 26 C 1.38247 * 119.99707 * 0.44133 * 25 24 23 27 27 C 1.38233 * 119.99582 * 359.81207 * 26 25 24 28 28 C 1.38233 * 119.99659 * 219.99704 * 23 3 2 29 29 H 1.08993 * 109.47388 * 60.00378 * 1 2 3 30 30 H 1.09001 * 109.46541 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47084 * 299.99938 * 1 2 3 32 32 H 0.96994 * 120.00007 * 354.79135 * 7 5 3 33 33 H 1.08006 * 119.96930 * 359.97438 * 9 8 7 34 34 H 1.08005 * 119.92790 * 180.22900 * 10 9 8 35 35 H 1.08007 * 119.96858 * 179.76533 * 11 10 9 36 36 H 0.97003 * 119.99278 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.07128 * 359.95101 * 22 8 7 38 38 H 1.08007 * 120.00248 * 359.97438 * 24 23 3 39 39 H 1.08003 * 120.00797 * 180.27197 * 25 24 23 40 40 H 1.07997 * 119.99657 * 179.83205 * 26 25 24 41 41 H 1.08000 * 120.00053 * 180.02562 * 27 26 25 42 42 H 1.07998 * 120.00352 * 359.97438 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2144 1.7644 -1.4208 6 8 1.9791 1.0106 -2.3414 7 7 2.6587 3.0125 -1.6686 8 6 2.9524 3.4032 -2.9797 9 6 3.4709 2.4809 -3.8807 10 6 3.7565 2.8648 -5.1767 11 6 3.5379 4.1685 -5.5783 12 6 3.0248 5.0965 -4.6810 13 8 2.8107 6.3774 -5.0762 14 6 2.4285 7.2552 -4.1268 15 1 2.3902 6.9486 -3.0919 16 6 2.0847 8.5514 -4.4790 17 7 2.1310 8.9246 -5.7398 18 14 1.5545 9.7673 -3.1638 19 1 2.6528 9.9423 -2.1799 20 1 1.2420 11.0745 -3.7952 21 1 0.3466 9.2514 -2.4709 22 6 2.7318 4.7129 -3.3799 23 6 3.3386 1.2640 0.7104 24 6 4.1871 0.1884 0.5271 25 6 5.4075 0.1523 1.1752 26 6 5.7755 1.1879 2.0140 27 6 4.9247 2.2611 2.2013 28 6 3.7061 2.2991 1.5497 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.7748 3.6399 -0.9381 33 1 3.6474 1.4622 -3.5684 34 1 4.1559 2.1452 -5.8762 35 1 3.7658 4.4665 -6.5912 36 1 1.8908 9.8316 -5.9861 37 1 2.3324 5.4324 -2.6805 38 1 3.8979 -0.6226 -0.1250 39 1 6.0724 -0.6860 1.0286 40 1 6.7278 1.1584 2.5224 41 1 5.2123 3.0703 2.8562 42 1 3.0414 3.1377 1.6961 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061966769.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:58 Heat of formation + Delta-G solvation = -45.234350 kcal Electronic energy + Delta-G solvation = -26884.686109 eV Core-core repulsion = 22989.057124 eV Total energy + Delta-G solvation = -3895.628985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.71791 -39.35390 -38.61560 -37.58148 -36.27011 -34.30424 -32.49314 -32.20508 -31.13320 -29.46876 -28.72964 -27.64766 -26.12468 -25.27845 -22.82333 -22.66792 -21.84749 -21.51873 -20.03939 -18.16625 -17.93573 -17.41331 -17.14686 -16.66917 -16.03650 -15.43208 -15.07983 -14.98902 -14.77717 -14.74629 -14.53811 -14.13895 -13.91796 -13.62805 -13.58257 -13.41893 -13.00273 -12.92350 -12.61760 -12.32328 -11.81487 -11.72967 -11.56571 -11.37538 -11.23665 -11.15892 -10.96677 -10.84331 -10.61740 -10.49367 -9.82849 -9.61269 -9.41848 -9.14168 -8.89994 -8.81902 -7.75139 -7.17035 -6.46503 -4.06427 0.99941 1.18633 1.92047 2.35786 2.76610 2.97897 3.09736 3.11228 3.14091 3.38842 3.77581 3.93969 4.36408 4.53443 4.58630 4.67362 4.80196 4.80397 4.91037 5.08428 5.11934 5.21711 5.26443 5.29017 5.36860 5.51255 5.65730 5.69828 5.81425 5.97746 6.05262 6.18736 6.22265 6.24622 6.26015 6.29125 6.60905 6.69990 6.74786 6.96487 6.97193 7.10136 7.29962 7.40288 7.65571 7.78982 7.97388 8.24640 8.98616 9.69229 10.71523 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.003206 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.723645 B = 8732.412979 C = 9307.070813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.118 3.882 4 H 0.095 0.905 5 C 0.493 3.507 6 O -0.501 6.501 7 N -0.664 5.664 8 C 0.181 3.819 9 C -0.204 4.204 10 C -0.063 4.063 11 C -0.200 4.200 12 C 0.168 3.832 13 O -0.176 6.176 14 C -0.393 4.393 15 H 0.089 0.911 16 C 0.040 3.960 17 N -0.862 5.862 18 Si 0.940 3.060 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.271 1.271 22 C -0.256 4.256 23 C -0.090 4.090 24 C -0.083 4.083 25 C -0.121 4.121 26 C -0.113 4.113 27 C -0.119 4.119 28 C -0.107 4.107 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.405 0.595 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.271 0.729 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.199 -13.937 17.036 22.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.269 6.269 3 C 0.056 3.944 4 H 0.113 0.887 5 C 0.278 3.722 6 O -0.374 6.374 7 N -0.310 5.310 8 C 0.088 3.912 9 C -0.225 4.225 10 C -0.082 4.082 11 C -0.220 4.220 12 C 0.114 3.886 13 O -0.079 6.079 14 C -0.469 4.469 15 H 0.107 0.893 16 C -0.164 4.164 17 N -0.497 5.497 18 Si 0.764 3.236 19 H -0.195 1.195 20 H -0.202 1.202 21 H -0.196 1.196 22 C -0.277 4.277 23 C -0.091 4.091 24 C -0.101 4.101 25 C -0.139 4.139 26 C -0.131 4.131 27 C -0.137 4.137 28 C -0.125 4.125 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.062 0.938 32 H 0.240 0.760 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.081 0.919 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.083 -14.377 16.052 21.650 hybrid contribution -0.520 1.202 1.072 1.692 sum 1.563 -13.176 17.124 21.663 Atomic orbital electron populations 1.22915 0.80137 1.03478 1.00333 1.87988 1.20385 1.24089 1.94417 1.20717 0.94062 0.87565 0.92024 0.88744 1.21155 0.77408 0.81953 0.91689 1.90737 1.48014 1.53323 1.45333 1.43462 1.65252 1.13843 1.08405 1.17398 0.96924 0.93399 0.83487 1.20529 1.08238 0.99411 0.94323 1.20529 0.97869 0.94698 0.95057 1.20255 1.09060 0.92741 0.99897 1.19074 0.92101 0.85984 0.91420 1.84020 1.74436 1.12979 1.36467 1.21217 1.46811 0.90542 0.88369 0.89343 1.25273 0.96669 0.97076 0.97414 1.70031 1.44511 1.19106 1.16036 0.85806 0.79194 0.79101 0.79462 1.19509 1.20238 1.19589 1.20802 1.13109 0.95634 0.98183 1.19345 0.94405 0.96520 0.98829 1.21051 0.93150 0.97600 0.98294 1.21200 0.96490 0.99015 0.97243 1.21241 0.99536 0.94105 0.98174 1.21097 0.94070 0.98576 0.99991 1.20980 0.97368 0.97886 0.96312 0.93270 0.88947 0.93782 0.76016 0.86442 0.86590 0.86346 0.91948 0.85274 0.85258 0.85759 0.85900 0.85595 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.81 101.05 1.09 1.36 16 2 O -0.35 -4.40 9.20 -55.09 -0.51 -4.91 16 3 C 0.12 1.39 2.72 -29.03 -0.08 1.31 16 4 H 0.09 0.85 7.65 -51.93 -0.40 0.45 16 5 C 0.49 7.59 6.85 -10.98 -0.08 7.51 16 6 O -0.50 -9.55 14.22 -14.31 -0.20 -9.76 16 7 N -0.66 -10.27 5.29 -9.88 -0.05 -10.32 16 8 C 0.18 3.51 6.27 -83.72 -0.52 2.99 16 9 C -0.20 -4.02 8.65 -39.34 -0.34 -4.36 16 10 C -0.06 -1.21 10.03 -39.64 -0.40 -1.60 16 11 C -0.20 -4.33 9.99 -39.36 -0.39 -4.72 16 12 C 0.17 4.09 6.64 -39.13 -0.26 3.83 16 13 O -0.18 -4.99 9.76 0.07 0.00 -4.99 16 14 C -0.39 -10.83 9.44 30.89 0.29 -10.53 16 15 H 0.09 2.22 5.30 -52.48 -0.28 1.95 16 16 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 17 N -0.86 -25.10 13.67 55.48 0.76 -24.34 16 18 Si 0.94 20.08 29.55 -169.99 -5.02 15.06 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 C -0.26 -5.55 9.04 -39.21 -0.35 -5.90 16 23 C -0.09 -1.00 4.92 -104.63 -0.52 -1.51 16 24 C -0.08 -0.94 9.35 -39.59 -0.37 -1.31 16 25 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 26 C -0.11 -0.98 10.05 -39.58 -0.40 -1.37 16 27 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 28 C -0.11 -0.99 9.67 -39.58 -0.38 -1.37 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 32 H 0.40 5.00 8.82 -40.82 -0.36 4.64 16 33 H 0.12 2.29 6.45 -52.48 -0.34 1.95 16 34 H 0.12 1.86 8.06 -52.48 -0.42 1.44 16 35 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 36 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.13 2.72 5.71 -52.49 -0.30 2.42 16 38 H 0.13 1.55 7.77 -52.48 -0.41 1.14 16 39 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.13 0.86 8.04 -52.49 -0.42 0.44 16 LS Contribution 365.75 15.07 5.51 5.51 Total: -1.00 -34.08 365.75 -8.13 -42.21 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.02 Total: 9.23 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -3.60 Total: -17.69 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.71 Total: -34.66 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.71 Total: -19.66 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.08 -8.13 -42.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061966769.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.028 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds