Wall clock time and date at job start Tue Mar 31 2020 14:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99581 * 2 1 4 4 H 1.09003 * 109.47452 * 30.00002 * 3 2 1 5 5 C 1.50697 * 109.46908 * 270.00105 * 3 2 1 6 6 O 1.21286 * 120.00503 * 354.99837 * 5 3 2 7 7 N 1.34784 * 119.99992 * 174.99961 * 5 3 2 8 8 C 1.39926 * 120.00074 * 174.78346 * 7 5 3 9 9 C 1.38962 * 120.03569 * 326.15819 * 8 7 5 10 10 C 1.38155 * 120.06461 * 179.76398 * 9 8 7 11 11 C 1.38162 * 120.14094 * 0.51102 * 10 9 8 12 12 C 1.38915 * 120.07123 * 359.74334 * 11 10 9 13 13 O 1.35745 * 120.03386 * 179.97438 * 12 11 10 14 14 C 1.34830 * 117.00003 * 185.92641 * 13 12 11 15 15 H 1.08008 * 119.99677 * 5.40406 * 14 13 12 16 16 C 1.38653 * 120.00507 * 185.40372 * 14 13 12 17 17 N 1.31564 * 119.99293 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00350 * 179.97438 * 16 14 13 19 19 H 1.48489 * 109.46924 * 60.00039 * 18 16 14 20 20 H 1.48497 * 109.47105 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46842 * 299.99943 * 18 16 14 22 22 C 1.38711 * 120.03387 * 146.43311 * 8 7 5 23 23 C 1.50703 * 109.47139 * 149.99994 * 3 2 1 24 24 C 1.38224 * 119.99852 * 39.72604 * 23 3 2 25 25 C 1.38233 * 120.00270 * 179.78625 * 24 23 3 26 26 C 1.38247 * 119.99707 * 0.44133 * 25 24 23 27 27 C 1.38233 * 119.99582 * 359.81207 * 26 25 24 28 28 C 1.38233 * 119.99659 * 219.99704 * 23 3 2 29 29 H 1.08993 * 109.47388 * 60.00378 * 1 2 3 30 30 H 1.09001 * 109.46541 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47084 * 299.99938 * 1 2 3 32 32 H 0.96994 * 120.00007 * 354.79135 * 7 5 3 33 33 H 1.08006 * 119.96930 * 359.97438 * 9 8 7 34 34 H 1.08005 * 119.92790 * 180.22900 * 10 9 8 35 35 H 1.08007 * 119.96858 * 179.76533 * 11 10 9 36 36 H 0.97003 * 119.99278 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.07128 * 359.95101 * 22 8 7 38 38 H 1.08007 * 120.00248 * 359.97438 * 24 23 3 39 39 H 1.08003 * 120.00797 * 180.27197 * 25 24 23 40 40 H 1.07997 * 119.99657 * 179.83205 * 26 25 24 41 41 H 1.08000 * 120.00053 * 180.02562 * 27 26 25 42 42 H 1.07998 * 120.00352 * 359.97438 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2144 1.7644 -1.4208 6 8 1.9791 1.0106 -2.3414 7 7 2.6587 3.0125 -1.6686 8 6 2.9524 3.4032 -2.9797 9 6 3.4709 2.4809 -3.8807 10 6 3.7565 2.8648 -5.1767 11 6 3.5379 4.1685 -5.5783 12 6 3.0248 5.0965 -4.6810 13 8 2.8107 6.3774 -5.0762 14 6 2.4285 7.2552 -4.1268 15 1 2.3902 6.9486 -3.0919 16 6 2.0847 8.5514 -4.4790 17 7 2.1310 8.9246 -5.7398 18 14 1.5545 9.7673 -3.1638 19 1 2.6528 9.9423 -2.1799 20 1 1.2420 11.0745 -3.7952 21 1 0.3466 9.2514 -2.4709 22 6 2.7318 4.7129 -3.3799 23 6 3.3386 1.2640 0.7104 24 6 4.1871 0.1884 0.5271 25 6 5.4075 0.1523 1.1752 26 6 5.7755 1.1879 2.0140 27 6 4.9247 2.2611 2.2013 28 6 3.7061 2.2991 1.5497 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.7748 3.6399 -0.9381 33 1 3.6474 1.4622 -3.5684 34 1 4.1559 2.1452 -5.8762 35 1 3.7658 4.4665 -6.5912 36 1 1.8908 9.8316 -5.9861 37 1 2.3324 5.4324 -2.6805 38 1 3.8979 -0.6226 -0.1250 39 1 6.0724 -0.6860 1.0286 40 1 6.7278 1.1584 2.5224 41 1 5.2123 3.0703 2.8562 42 1 3.0414 3.1377 1.6961 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061966769.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:57 Heat of formation + Delta-G solvation = -66.041826 kcal Electronic energy + Delta-G solvation = -26885.588389 eV Core-core repulsion = 22989.057124 eV Total energy + Delta-G solvation = -3896.531265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.91730 -40.71360 -39.83703 -38.70052 -37.83340 -35.74882 -34.24841 -33.27992 -31.82188 -31.03718 -30.34616 -28.56304 -27.38986 -26.90166 -23.92406 -23.55870 -23.45901 -22.61509 -21.40681 -19.84918 -19.44931 -18.62332 -18.11855 -17.78993 -17.03690 -16.80619 -16.73807 -16.29351 -16.06085 -15.76040 -15.54333 -15.50865 -15.42960 -15.28833 -14.63445 -14.39557 -14.24612 -14.16198 -13.71215 -13.56999 -13.33538 -13.24885 -12.79530 -12.64622 -12.50918 -12.46015 -12.14549 -12.09917 -11.89432 -11.76495 -11.43035 -11.29056 -10.75070 -10.55902 -9.84319 -9.74073 -9.38823 -8.91239 -8.45918 -6.15134 0.22445 0.39303 0.48254 0.66390 1.36925 1.43901 1.50353 1.53602 1.81027 2.18928 2.59315 2.82078 2.94291 3.15695 3.46887 3.50691 3.60764 3.80313 4.09171 4.11412 4.15704 4.29154 4.29493 4.41173 4.42948 4.48525 4.59434 4.60675 4.67825 4.68566 4.80035 4.98073 4.99359 5.10440 5.13491 5.33835 5.41801 5.50948 5.51518 5.60676 5.63142 5.64348 5.90120 6.01079 6.05845 6.13751 6.37556 6.97910 6.99711 7.76917 8.76907 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.003206 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.723645 B = 8732.412979 C = 9307.070813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.371 6.371 3 C 0.127 3.873 4 H 0.128 0.872 5 C 0.493 3.507 6 O -0.542 6.542 7 N -0.654 5.654 8 C 0.187 3.813 9 C -0.201 4.201 10 C -0.052 4.052 11 C -0.213 4.213 12 C 0.136 3.864 13 O -0.225 6.225 14 C -0.415 4.415 15 H 0.105 0.895 16 C -0.022 4.022 17 N -0.920 5.920 18 Si 1.018 2.982 19 H -0.254 1.254 20 H -0.275 1.275 21 H -0.256 1.256 22 C -0.257 4.257 23 C -0.106 4.106 24 C -0.106 4.106 25 C -0.131 4.131 26 C -0.115 4.115 27 C -0.123 4.123 28 C -0.109 4.109 29 H 0.032 0.968 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.422 0.578 33 H 0.124 0.876 34 H 0.153 0.847 35 H 0.120 0.880 36 H 0.273 0.727 37 H 0.133 0.867 38 H 0.112 0.888 39 H 0.138 0.862 40 H 0.146 0.854 41 H 0.151 0.849 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.398 -14.338 20.437 25.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.288 6.288 3 C 0.065 3.935 4 H 0.145 0.855 5 C 0.280 3.720 6 O -0.418 6.418 7 N -0.302 5.302 8 C 0.093 3.907 9 C -0.222 4.222 10 C -0.070 4.070 11 C -0.233 4.233 12 C 0.085 3.915 13 O -0.131 6.131 14 C -0.491 4.491 15 H 0.122 0.878 16 C -0.219 4.219 17 N -0.558 5.558 18 Si 0.837 3.163 19 H -0.178 1.178 20 H -0.200 1.200 21 H -0.180 1.180 22 C -0.279 4.279 23 C -0.106 4.106 24 C -0.124 4.124 25 C -0.149 4.149 26 C -0.132 4.132 27 C -0.141 4.141 28 C -0.127 4.127 29 H 0.051 0.949 30 H 0.123 0.877 31 H 0.089 0.911 32 H 0.260 0.740 33 H 0.141 0.859 34 H 0.170 0.830 35 H 0.138 0.862 36 H 0.082 0.918 37 H 0.151 0.849 38 H 0.130 0.870 39 H 0.155 0.845 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.293 -14.829 19.505 24.609 hybrid contribution -0.498 1.012 0.055 1.129 sum 1.795 -13.817 19.559 24.015 Atomic orbital electron populations 1.23096 0.78905 1.04626 1.00778 1.87985 1.21856 1.24728 1.94219 1.20760 0.95383 0.87951 0.89364 0.85459 1.21993 0.75801 0.81027 0.93132 1.90712 1.49709 1.54275 1.47062 1.43434 1.64863 1.14563 1.07312 1.17435 0.95578 0.92400 0.85294 1.20801 1.07179 0.99640 0.94599 1.20895 0.96353 0.94175 0.95586 1.20476 1.09405 0.93448 0.99934 1.19579 0.93304 0.85459 0.93169 1.83990 1.76686 1.14685 1.37741 1.21797 1.46973 0.91160 0.89191 0.87799 1.26615 0.96309 0.98942 1.00058 1.70190 1.46983 1.19848 1.18786 0.84653 0.79460 0.75855 0.76310 1.17767 1.19956 1.18043 1.20834 1.13049 0.96657 0.97337 1.19383 0.94026 0.97312 0.99922 1.21085 0.94381 0.97800 0.99152 1.21420 0.96134 1.00020 0.97302 1.21596 1.00518 0.93605 0.97529 1.21487 0.93665 0.99094 0.99807 1.21298 0.98041 0.97873 0.95440 0.94917 0.87678 0.91083 0.74019 0.85860 0.82979 0.86161 0.91822 0.84949 0.87031 0.84459 0.83583 0.83109 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.81 113.37 1.23 1.61 16 2 O -0.37 -8.81 9.20 -129.99 -1.20 -10.01 16 3 C 0.13 2.72 2.72 29.10 0.08 2.80 16 4 H 0.13 1.85 7.65 -2.39 -0.02 1.83 16 5 C 0.49 14.49 6.85 87.65 0.60 15.09 16 6 O -0.54 -20.37 14.22 15.94 0.23 -20.14 16 7 N -0.65 -19.09 5.29 -303.55 -1.61 -20.70 16 8 C 0.19 7.09 6.27 38.14 0.24 7.33 16 9 C -0.20 -7.69 8.65 22.42 0.19 -7.50 16 10 C -0.05 -1.93 10.03 22.23 0.22 -1.70 16 11 C -0.21 -9.34 9.99 22.41 0.22 -9.12 16 12 C 0.14 6.80 6.64 22.56 0.15 6.95 16 13 O -0.22 -13.35 9.76 -22.68 -0.22 -13.57 16 14 C -0.42 -23.49 9.44 67.92 0.64 -22.85 16 15 H 0.10 5.27 5.30 -2.91 -0.02 5.25 16 16 C -0.02 -1.19 5.49 84.83 0.47 -0.73 16 17 N -0.92 -55.69 13.67 21.61 0.30 -55.40 16 18 Si 1.02 41.13 29.55 68.60 2.03 43.16 16 19 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 21 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 22 C -0.26 -11.16 9.04 22.51 0.20 -10.95 16 23 C -0.11 -2.12 4.92 -19.87 -0.10 -2.22 16 24 C -0.11 -2.31 9.35 22.27 0.21 -2.10 16 25 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 26 C -0.11 -1.66 10.05 22.27 0.22 -1.44 16 27 C -0.12 -1.68 10.05 22.27 0.22 -1.46 16 28 C -0.11 -1.64 9.67 22.27 0.22 -1.42 16 29 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 0.87 8.09 -2.38 -0.02 0.85 16 32 H 0.42 9.34 8.82 -92.71 -0.82 8.53 16 33 H 0.12 4.65 6.45 -2.91 -0.02 4.63 16 34 H 0.15 4.51 8.06 -2.91 -0.02 4.49 16 35 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.13 5.55 5.71 -2.91 -0.02 5.53 16 38 H 0.11 2.73 7.77 -2.91 -0.02 2.71 16 39 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 41 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.15 1.41 8.04 -2.91 -0.02 1.39 16 Total: -1.00 -77.88 365.75 5.01 -72.87 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.24 Total: 33.56 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 5.24 Total: -29.78 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -1.31 Total: -76.09 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -1.19 Total: -43.72 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -77.88 5.01 -72.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061966769.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.830 kcal (2) G-P(sol) polarization free energy of solvation -77.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds