Wall clock time and date at job start Tue Mar 31 2020 14:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35916 * 116.99761 * 2 1 4 4 C 1.38846 * 119.98455 * 0.02619 * 3 2 1 5 5 C 1.38244 * 120.23659 * 179.97438 * 4 3 2 6 6 C 1.38006 * 120.20879 * 0.02562 * 5 4 3 7 7 C 1.39566 * 119.96366 * 359.97333 * 6 5 4 8 8 C 1.47859 * 120.11458 * 180.02562 * 7 6 5 9 9 O 1.21546 * 119.99640 * 179.97438 * 8 7 6 10 10 N 1.34774 * 120.00089 * 359.97438 * 8 7 6 11 11 C 1.46499 * 119.99629 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47001 * 180.02562 * 11 10 8 13 13 C 1.38309 * 119.92755 * 269.72896 * 12 11 10 14 14 C 1.38105 * 120.06280 * 179.72335 * 13 12 11 15 15 C 1.38873 * 119.93323 * 0.56874 * 14 13 12 16 16 O 1.35755 * 120.06973 * 179.67920 * 15 14 13 17 17 C 1.34829 * 116.99907 * 174.48576 * 16 15 14 18 18 H 1.08000 * 120.00051 * 5.06147 * 17 16 15 19 19 C 1.38648 * 119.99878 * 185.06007 * 17 16 15 20 20 N 1.31558 * 120.00065 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00040 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47083 * 59.99788 * 21 19 17 23 23 H 1.48500 * 109.47178 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47032 * 300.00145 * 21 19 17 25 25 C 1.38875 * 119.86344 * 359.70738 * 15 14 13 26 26 C 1.38104 * 119.93307 * 359.97438 * 25 15 14 27 27 C 1.38458 * 119.98213 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47003 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47091 * 299.99677 * 1 2 3 30 30 H 1.08996 * 109.47459 * 59.99870 * 1 2 3 31 31 H 1.07998 * 119.88361 * 359.97438 * 4 3 2 32 32 H 1.08010 * 119.89409 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.01679 * 179.97438 * 6 5 4 34 34 H 0.97003 * 120.00200 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.47743 * 300.00059 * 11 10 8 36 36 H 1.09003 * 109.47403 * 60.00605 * 11 10 8 37 37 H 1.07999 * 119.96703 * 359.97437 * 13 12 11 38 38 H 1.08003 * 120.03239 * 180.27393 * 14 13 12 39 39 H 0.97003 * 119.99493 * 180.02562 * 20 19 17 40 40 H 1.07999 * 120.04107 * 179.97438 * 25 15 14 41 41 H 1.07999 * 119.96858 * 180.02562 * 26 25 15 42 42 H 1.07998 * 120.10083 * 359.72322 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2894 2.3753 0.0005 5 6 1.9116 3.6098 0.0011 6 6 3.2891 3.6932 0.0005 7 6 4.0579 2.5284 0.0000 8 6 5.5341 2.6138 0.0000 9 8 6.2015 1.5980 0.0000 10 7 6.1394 3.8180 0.0000 11 6 7.6019 3.9025 0.0006 12 6 8.0214 5.3500 0.0010 13 6 8.2194 6.0114 -1.1974 14 6 8.5983 7.3395 -1.2002 15 6 8.7920 8.0074 0.0018 16 8 9.1708 9.3110 0.0023 17 6 9.2302 9.9308 1.1982 18 1 9.0621 9.3702 2.1059 19 6 9.5072 11.2878 1.2628 20 7 9.7116 11.9707 0.1571 21 14 9.5903 12.1463 2.9198 22 1 10.6544 11.5231 3.7473 23 1 9.9000 13.5844 2.7171 24 1 8.2833 12.0136 3.6121 25 6 8.5980 7.3388 1.2035 26 6 8.2127 6.0126 1.1998 27 6 3.4287 1.2831 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2111 2.3162 0.0006 32 1 1.3176 4.5119 0.0019 33 1 3.7719 4.6592 0.0006 34 1 5.6067 4.6286 0.0004 35 1 7.9941 3.4107 0.8908 36 1 7.9947 3.4104 -0.8892 37 1 8.0736 5.4900 -2.1318 38 1 8.7484 7.8567 -2.1364 39 1 9.9057 12.9201 0.2024 40 1 8.7482 7.8554 2.1400 41 1 8.0612 5.4923 2.1340 42 1 4.0182 0.3783 0.0036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067930360.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:34 Heat of formation + Delta-G solvation = -48.244318 kcal Electronic energy + Delta-G solvation = -25473.721401 eV Core-core repulsion = 21577.961893 eV Total energy + Delta-G solvation = -3895.759507 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.68102 -39.62715 -39.03924 -37.39537 -36.82987 -34.52135 -32.41249 -31.61709 -30.92465 -30.29549 -29.54871 -27.69747 -26.06836 -25.02440 -23.34621 -22.72302 -22.07734 -20.67969 -20.52794 -18.86148 -18.09174 -17.14184 -16.80826 -16.47042 -16.39239 -16.13434 -15.60056 -15.30784 -14.67944 -14.59399 -14.38238 -14.13374 -13.83654 -13.80387 -13.72058 -13.42095 -13.06254 -12.80815 -12.69091 -12.58981 -12.18389 -12.10353 -11.71072 -11.46964 -11.41849 -11.30948 -10.98421 -10.82218 -10.72552 -10.52027 -10.03115 -9.45412 -9.37867 -8.98827 -8.92633 -8.60383 -8.30967 -7.35499 -6.54679 -4.13733 0.55234 1.08195 2.03036 2.10773 2.72900 2.79857 3.07782 3.07965 3.11674 3.38975 3.62645 3.88896 4.39965 4.40583 4.51765 4.67473 4.73125 4.76113 4.82345 4.99999 5.03971 5.06916 5.13510 5.17507 5.27646 5.40046 5.60205 5.64087 5.78234 5.85267 5.91263 6.01859 6.04262 6.10091 6.25611 6.32580 6.45825 6.57787 6.78100 6.93234 6.99286 7.11630 7.24816 7.32964 7.53596 7.69366 7.89781 8.17466 8.90467 9.58302 10.62626 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.002035 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.677134 B =13758.800326 C =14468.885517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.117 3.883 4 C -0.187 4.187 5 C -0.086 4.086 6 C -0.122 4.122 7 C -0.092 4.092 8 C 0.554 3.446 9 O -0.540 6.540 10 N -0.714 5.714 11 C 0.179 3.821 12 C -0.216 4.216 13 C -0.054 4.054 14 C -0.195 4.195 15 C 0.161 3.839 16 O -0.173 6.173 17 C -0.394 4.394 18 H 0.093 0.907 19 C 0.041 3.959 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.237 4.237 26 C -0.050 4.050 27 C -0.094 4.094 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.402 0.598 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.272 0.728 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.265 -16.938 0.303 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.072 3.928 4 C -0.206 4.206 5 C -0.104 4.104 6 C -0.141 4.141 7 C -0.095 4.095 8 C 0.340 3.660 9 O -0.419 6.419 10 N -0.366 5.366 11 C 0.057 3.943 12 C -0.218 4.218 13 C -0.073 4.073 14 C -0.215 4.215 15 C 0.106 3.894 16 O -0.075 6.075 17 C -0.470 4.470 18 H 0.110 0.890 19 C -0.164 4.164 20 N -0.493 5.493 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.256 4.256 26 C -0.069 4.069 27 C -0.113 4.113 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.238 0.762 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.146 0.854 41 H 0.127 0.873 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.535 -17.421 0.052 24.019 hybrid contribution -0.510 1.088 0.885 1.492 sum -17.046 -16.333 0.937 23.626 Atomic orbital electron populations 1.23083 0.78231 1.04135 1.01394 1.86104 1.21460 1.26572 1.88786 1.18867 0.92030 0.84426 0.97460 1.21431 1.00293 0.92359 1.06509 1.20911 0.94346 0.97281 0.97867 1.21307 0.94098 0.97766 1.00936 1.19777 0.93231 0.93415 1.03085 1.18207 0.87059 0.83832 0.76870 1.90768 1.66007 1.35014 1.50079 1.46277 1.08442 1.07834 1.74008 1.20030 0.78398 0.93822 1.02070 1.19200 1.13758 0.95085 0.93743 1.20546 0.96865 0.93263 0.96598 1.20219 1.10108 0.94816 0.96319 1.19441 0.90872 0.85785 0.93315 1.83980 1.72543 1.17851 1.33136 1.21307 1.50616 0.92046 0.83034 0.88956 1.25319 0.96327 0.95400 0.99400 1.70028 1.43261 1.08868 1.27143 0.85765 0.79208 0.78396 0.79997 1.19415 1.20202 1.19424 1.21159 1.10555 0.95418 0.98509 1.20653 0.96080 0.93725 0.96449 1.20464 0.91261 0.98339 1.01264 0.88089 0.92549 0.92552 0.85086 0.84933 0.85066 0.76206 0.91324 0.91268 0.86900 0.86348 0.91811 0.85399 0.87341 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.99 10.49 -19.48 -0.20 -3.20 16 3 C 0.12 1.19 6.68 -39.28 -0.26 0.93 16 4 C -0.19 -1.53 9.03 -39.35 -0.36 -1.89 16 5 C -0.09 -0.70 10.03 -39.66 -0.40 -1.10 16 6 C -0.12 -1.17 9.54 -39.17 -0.37 -1.54 16 7 C -0.09 -1.08 5.87 -104.99 -0.62 -1.70 16 8 C 0.55 7.69 7.77 -12.32 -0.10 7.59 16 9 O -0.54 -9.24 16.35 5.32 0.09 -9.15 16 10 N -0.71 -9.06 5.50 -62.43 -0.34 -9.41 16 11 C 0.18 2.48 5.80 -5.19 -0.03 2.45 16 12 C -0.22 -3.40 5.25 -104.57 -0.55 -3.95 16 13 C -0.05 -0.89 9.69 -39.60 -0.38 -1.27 16 14 C -0.20 -3.87 9.99 -39.40 -0.39 -4.26 16 15 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 16 O -0.17 -4.74 9.76 0.04 0.00 -4.74 16 17 C -0.39 -10.60 9.49 30.88 0.29 -10.31 16 18 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -24.45 13.67 55.48 0.76 -23.69 16 21 Si 0.94 19.83 29.55 -169.99 -5.02 14.81 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 C -0.24 -4.83 9.17 -39.39 -0.36 -5.19 16 26 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 27 C -0.09 -1.10 9.53 -39.02 -0.37 -1.48 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 30 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 31 H 0.13 0.73 6.28 -52.49 -0.33 0.40 16 32 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.13 1.06 6.40 -52.49 -0.34 0.72 16 34 H 0.40 4.47 6.49 -40.82 -0.27 4.20 16 35 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 39 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.13 2.62 5.64 -52.49 -0.30 2.33 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 42 H 0.14 1.78 7.65 -52.49 -0.40 1.38 16 LS Contribution 363.95 15.07 5.48 5.48 Total: -1.00 -32.15 363.95 -7.67 -39.82 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -4.78 Total: 7.49 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -3.65 Total: -17.43 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.42 Total: -33.10 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.12 Total: -17.08 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.15 -7.67 -39.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067930360.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.421 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds