Wall clock time and date at job start Tue Mar 31 2020 14:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99690 * 2 1 4 4 C 1.50701 * 109.46895 * 180.02562 * 3 2 1 5 5 C 1.38260 * 120.00106 * 0.02562 * 4 3 2 6 6 C 1.38212 * 120.00041 * 179.97438 * 5 4 3 7 7 C 1.38258 * 120.00085 * 359.73665 * 6 5 4 8 8 C 1.38211 * 119.99784 * 0.52159 * 7 6 5 9 9 C 1.38214 * 120.00231 * 179.97438 * 4 3 2 10 10 C 1.50703 * 119.99514 * 0.02562 * 9 4 3 11 11 N 1.46498 * 109.47162 * 80.02192 * 10 9 4 12 12 S 1.65608 * 119.99460 * 164.99857 * 11 10 9 13 13 O 1.42106 * 104.27097 * 181.07177 * 12 11 10 14 14 O 1.42098 * 104.27876 * 308.92380 * 12 11 10 15 15 C 1.81394 * 104.45176 * 64.99998 * 12 11 10 16 16 C 1.52998 * 109.47241 * 179.97438 * 15 12 11 17 17 C 1.53002 * 109.47312 * 179.97438 * 16 15 12 18 18 C 1.50694 * 109.47244 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00013 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99952 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99803 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99970 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47170 * 90.00209 * 22 20 18 24 24 H 1.48504 * 109.47065 * 209.99771 * 22 20 18 25 25 H 1.48502 * 109.47184 * 330.00005 * 22 20 18 26 26 H 1.09005 * 109.47400 * 300.00183 * 1 2 3 27 27 H 1.08994 * 109.47776 * 60.00212 * 1 2 3 28 28 H 1.09008 * 109.47245 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47278 * 60.00160 * 3 2 1 30 30 H 1.08998 * 109.47159 * 300.00057 * 3 2 1 31 31 H 1.08001 * 119.99581 * 359.97438 * 5 4 3 32 32 H 1.08004 * 119.99477 * 180.02562 * 6 5 4 33 33 H 1.07998 * 119.99823 * 180.27809 * 7 6 5 34 34 H 1.08002 * 120.00200 * 179.76459 * 8 7 6 35 35 H 1.09005 * 109.46415 * 200.01930 * 10 9 4 36 36 H 1.08994 * 109.47113 * 320.01514 * 10 9 4 37 37 H 0.96996 * 120.00187 * 344.99570 * 11 10 9 38 38 H 1.09005 * 109.46994 * 299.99703 * 15 12 11 39 39 H 1.09004 * 109.47185 * 59.99280 * 15 12 11 40 40 H 1.08995 * 109.47187 * 299.99796 * 16 15 12 41 41 H 1.08996 * 109.46770 * 59.99596 * 16 15 12 42 42 H 1.09005 * 109.47074 * 300.00056 * 17 16 15 43 43 H 1.09004 * 109.47034 * 59.99590 * 17 16 15 44 44 H 0.97006 * 119.99998 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 6 4.1071 -0.0617 -0.0016 6 6 5.4849 -0.1708 -0.0028 7 6 6.2685 0.9682 -0.0084 8 6 5.6741 2.2160 -0.0020 9 6 4.2959 2.3251 -0.0013 10 6 3.6477 3.6857 -0.0008 11 7 3.2227 4.0236 1.3599 12 16 2.8227 5.5854 1.7384 13 8 2.4934 5.5377 3.1200 14 8 3.9256 6.3519 1.2744 15 6 1.3454 5.9283 0.7433 16 6 0.8727 7.3591 1.0084 17 6 -0.3730 7.6486 0.1685 18 6 -0.8390 9.0576 0.4302 19 1 -0.3003 9.6842 1.1256 20 6 -1.9525 9.5472 -0.2191 21 7 -2.3588 10.7770 0.0089 22 14 -2.8838 8.4637 -1.4224 23 1 -3.9420 7.7151 -0.6978 24 1 -3.5066 9.3106 -2.4713 25 1 -1.9433 7.5041 -2.0547 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.6885 1.8464 0.8899 30 1 1.6885 1.8464 -0.8900 31 1 3.4949 -0.9514 -0.0016 32 1 5.9493 -1.1459 -0.0040 33 1 7.3451 0.8829 -0.0138 34 1 6.2862 3.1058 -0.0025 35 1 4.3629 4.4289 -0.3532 36 1 2.7801 3.6750 -0.6604 37 1 3.1755 3.3326 2.0390 38 1 1.5851 5.8145 -0.3140 39 1 0.5546 5.2287 1.0139 40 1 0.6329 7.4725 2.0656 41 1 1.6634 8.0589 0.7381 42 1 -0.1328 7.5353 -0.8887 43 1 -1.1639 6.9486 0.4384 44 1 -3.1420 11.1216 -0.4482 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068877244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:00 Heat of formation + Delta-G solvation = -132.485810 kcal Electronic energy + Delta-G solvation = -25451.309161 eV Core-core repulsion = 21687.340620 eV Total energy + Delta-G solvation = -3763.968541 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.74120 -38.49522 -38.19479 -37.06574 -36.49608 -36.39658 -34.24318 -32.86690 -31.92796 -30.14962 -28.27828 -26.68391 -26.22021 -25.38941 -22.85182 -22.24706 -21.82746 -20.39691 -18.97661 -18.72042 -17.94238 -17.53635 -17.27595 -17.18433 -16.79508 -16.39968 -16.19535 -15.90554 -15.75902 -15.49081 -15.18020 -14.87038 -14.47261 -14.18171 -13.96002 -13.80134 -13.63817 -13.53572 -13.22702 -13.20197 -13.12924 -13.11915 -12.92264 -12.69081 -12.54444 -12.38321 -11.92250 -11.83941 -11.72646 -11.63138 -11.40593 -11.31443 -10.79687 -10.77046 -10.41056 -9.77656 -9.56580 -8.29329 -6.35364 -0.77733 0.32194 0.47250 1.37183 1.40081 1.51516 1.82146 2.36904 2.75793 2.77039 2.84592 3.06032 3.23582 3.61714 3.72366 3.84701 3.94418 4.04279 4.18792 4.30446 4.34602 4.36229 4.42025 4.44532 4.57855 4.60848 4.62936 4.65993 4.79857 4.82628 4.88107 4.91042 4.97671 5.05697 5.16290 5.35569 5.47435 5.51671 5.61471 5.63406 5.63586 6.01589 6.07167 6.22426 6.25938 6.73339 7.29324 8.87767 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013674 B = 0.003048 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.162251 B = 9185.616088 C =10496.147139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.091 3.909 4 C -0.082 4.082 5 C -0.113 4.113 6 C -0.118 4.118 7 C -0.127 4.127 8 C -0.111 4.111 9 C -0.100 4.100 10 C 0.144 3.856 11 N -1.106 6.106 12 S 2.623 3.377 13 O -0.995 6.995 14 O -0.991 6.991 15 C -0.609 4.609 16 C -0.105 4.105 17 C -0.005 4.005 18 C -0.544 4.544 19 H 0.028 0.972 20 C -0.001 4.001 21 N -0.954 5.954 22 Si 0.956 3.044 23 H -0.265 1.265 24 H -0.287 1.287 25 H -0.235 1.235 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.131 0.869 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.423 0.577 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.846 -28.197 -3.636 31.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C 0.015 3.985 4 C -0.083 4.083 5 C -0.131 4.131 6 C -0.136 4.136 7 C -0.145 4.145 8 C -0.129 4.129 9 C -0.102 4.102 10 C 0.019 3.981 11 N -0.868 5.868 12 S 2.720 3.280 13 O -0.985 6.985 14 O -0.980 6.980 15 C -0.741 4.741 16 C -0.144 4.144 17 C -0.043 4.043 18 C -0.582 4.582 19 H 0.047 0.953 20 C -0.197 4.197 21 N -0.594 5.594 22 Si 0.778 3.222 23 H -0.190 1.190 24 H -0.213 1.213 25 H -0.158 1.158 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.149 0.851 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.153 0.847 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.259 0.741 38 H 0.177 0.823 39 H 0.177 0.823 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.341 -27.536 -3.197 30.764 hybrid contribution -1.240 0.128 -0.319 1.287 sum 12.100 -27.408 -3.516 30.166 Atomic orbital electron populations 1.22933 0.79353 1.03934 1.00972 1.87794 1.21267 1.27785 1.95681 1.21455 0.89688 0.85230 1.02121 1.19702 0.94508 0.93452 1.00652 1.21131 0.95105 0.97529 0.99364 1.21506 0.93610 0.99692 0.98793 1.21460 1.01153 0.92133 0.99764 1.21332 0.93890 0.98823 0.98891 1.19500 0.93879 0.93425 1.03364 1.20462 1.00580 0.94513 0.82557 1.55416 1.83970 1.28012 1.19357 1.04384 0.76443 0.73047 0.74155 1.93546 1.86198 1.85930 1.32813 1.93536 1.50746 1.70721 1.83031 1.30508 1.20307 1.05911 1.17333 1.21181 0.99777 0.92226 1.01216 1.19505 0.93913 0.94439 0.96457 1.21579 1.12056 0.99137 1.25462 0.95324 1.26138 0.98205 0.96492 0.98889 1.70091 1.26396 1.17951 1.44978 0.85581 0.79144 0.79034 0.78421 1.19007 1.21325 1.15820 0.93295 0.93097 0.88423 0.90758 0.90389 0.85075 0.84069 0.83962 0.84700 0.88907 0.88341 0.74100 0.82332 0.82342 0.92032 0.91853 0.94742 0.95014 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -6.54 9.18 -148.98 -1.37 -7.90 16 3 C 0.09 1.29 5.17 71.24 0.37 1.66 16 4 C -0.08 -1.32 5.88 -19.86 -0.12 -1.44 16 5 C -0.11 -1.81 9.38 22.27 0.21 -1.60 16 6 C -0.12 -1.60 10.05 22.27 0.22 -1.38 16 7 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16 8 C -0.11 -1.68 9.67 22.27 0.22 -1.47 16 9 C -0.10 -1.56 5.28 -19.86 -0.10 -1.67 16 10 C 0.14 2.11 5.67 85.63 0.49 2.59 16 11 N -1.11 -19.09 5.69 -190.79 -1.08 -20.17 16 12 S 2.62 66.49 5.46 -56.49 -0.31 66.19 16 13 O -0.99 -32.43 18.08 -127.65 -2.31 -34.74 16 14 O -0.99 -31.72 17.50 -127.65 -2.23 -33.95 16 15 C -0.61 -14.43 6.07 71.98 0.44 -13.99 16 16 C -0.10 -3.83 5.16 30.59 0.16 -3.67 16 17 C 0.00 -0.20 4.04 29.85 0.12 -0.08 16 18 C -0.54 -31.10 9.66 25.60 0.25 -30.86 16 19 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 20 C 0.00 -0.04 5.47 84.66 0.46 0.42 16 21 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 22 Si 0.96 42.33 27.47 68.60 1.88 44.21 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.24 -9.19 6.54 99.48 0.65 -8.54 16 26 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.07 0.93 7.93 -2.39 -0.02 0.92 16 30 H 0.08 0.91 7.55 -2.39 -0.02 0.89 16 31 H 0.13 2.08 7.01 -2.91 -0.02 2.06 16 32 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.14 1.80 8.04 -2.91 -0.02 1.78 16 35 H 0.09 1.39 7.56 -2.38 -0.02 1.37 16 36 H 0.10 0.96 7.06 -2.39 -0.02 0.94 16 37 H 0.42 6.46 8.59 -96.74 -0.83 5.63 16 38 H 0.16 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.16 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.03 1.41 7.20 -2.38 -0.02 1.39 16 43 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16 44 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -80.05 378.54 -0.84 -80.89 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.11 Total: 16.49 kcal Atomic # 6 Polarization: -55.61 SS G_CDS: 4.18 Total: -51.43 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -0.79 Total: -79.74 kcal Atomic # 8 Polarization: -70.69 SS G_CDS: -5.91 Total: -76.60 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.88 Total: 44.21 kcal Atomic # 16 Polarization: 66.49 SS G_CDS: -0.31 Total: 66.19 kcal Total: -80.05 -0.84 -80.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068877244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.597 kcal (2) G-P(sol) polarization free energy of solvation -80.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds