Wall clock time and date at job start Tue Mar 31 2020 14:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00378 * 2 1 4 4 C 1.50706 * 109.46997 * 180.02562 * 3 2 1 5 5 C 1.38254 * 120.00295 * 269.91159 * 4 3 2 6 6 C 1.38204 * 119.99840 * 179.97438 * 5 4 3 7 7 C 1.38262 * 120.00497 * 0.09078 * 6 5 4 8 8 C 1.38207 * 119.99568 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99822 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.46797 * 269.97498 * 9 8 7 11 11 S 1.65608 * 119.99802 * 165.00128 * 10 9 8 12 12 O 1.42092 * 104.27836 * 181.07585 * 11 10 9 13 13 O 1.42101 * 104.27334 * 308.93205 * 11 10 9 14 14 C 1.81404 * 104.44876 * 64.99946 * 11 10 9 15 15 C 1.53004 * 109.46744 * 179.97438 * 14 11 10 16 16 C 1.52996 * 109.46485 * 180.02562 * 15 14 11 17 17 C 1.50706 * 109.46823 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99695 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00153 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00174 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99985 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47341 * 89.99804 * 21 19 17 23 23 H 1.48506 * 109.47140 * 210.00090 * 21 19 17 24 24 H 1.48502 * 109.47007 * 330.00014 * 21 19 17 25 25 C 1.38220 * 119.99654 * 90.00658 * 4 3 2 26 26 H 1.09003 * 109.46320 * 299.99883 * 1 2 3 27 27 H 1.08998 * 109.47018 * 59.98982 * 1 2 3 28 28 H 1.08996 * 109.47344 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46689 * 60.00391 * 3 2 1 30 30 H 1.08996 * 109.47310 * 300.00138 * 3 2 1 31 31 H 1.07997 * 119.99709 * 0.04961 * 5 4 3 32 32 H 1.08000 * 119.99746 * 180.02562 * 6 5 4 33 33 H 1.07991 * 120.00010 * 179.97438 * 7 6 5 34 34 H 1.08993 * 109.47341 * 29.98219 * 9 8 7 35 35 H 1.09001 * 109.46864 * 149.98303 * 9 8 7 36 36 H 0.96996 * 120.00625 * 345.00283 * 10 9 8 37 37 H 1.08990 * 109.47061 * 299.99851 * 14 11 10 38 38 H 1.08995 * 109.46926 * 60.00367 * 14 11 10 39 39 H 1.08999 * 109.47080 * 300.00568 * 15 14 11 40 40 H 1.08997 * 109.46617 * 60.00270 * 15 14 11 41 41 H 1.08998 * 109.47667 * 299.99487 * 16 15 14 42 42 H 1.08997 * 109.47546 * 60.00749 * 16 15 14 43 43 H 0.97001 * 119.99843 * 179.97438 * 20 19 17 44 44 H 1.08000 * 119.99660 * 0.27001 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5127 1.1863 -0.0006 5 6 4.2025 1.1332 1.1964 6 6 5.5802 1.0235 1.1957 7 6 6.2688 0.9685 -0.0020 8 6 5.5793 1.0229 -1.1986 9 6 6.3299 0.9636 -2.5040 10 7 6.6812 2.3214 -2.9273 11 16 7.8147 2.5521 -4.1125 12 8 7.9103 3.9644 -4.2359 13 8 8.9275 1.7766 -3.6886 14 6 7.0669 1.8322 -5.6002 15 6 8.0293 1.9853 -6.7798 16 6 7.3983 1.3787 -8.0347 17 6 8.3464 1.5290 -9.1964 18 1 9.3035 2.0088 -9.0538 19 6 7.9921 1.0540 -10.4413 20 7 8.8193 1.1856 -11.4553 21 14 6.3371 0.2235 -10.6878 22 1 5.3230 1.2419 -11.0618 23 1 6.4466 -0.7869 -11.7706 24 1 5.9259 -0.4446 -9.4270 25 6 4.2011 1.1320 -1.1980 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6888 1.8462 0.8900 30 1 1.6888 1.8463 -0.8899 31 1 3.6646 1.1764 2.1319 32 1 6.1190 0.9816 2.1307 33 1 7.3453 0.8832 -0.0025 34 1 7.2391 0.3768 -2.3741 35 1 5.7019 0.4975 -3.2633 36 1 6.2500 3.0854 -2.5135 37 1 6.8654 0.7746 -5.4302 38 1 6.1335 2.3486 -5.8239 39 1 8.2305 3.0430 -6.9496 40 1 8.9629 1.4692 -6.5563 41 1 7.1968 0.3210 -7.8652 42 1 6.4648 1.8952 -8.2580 43 1 8.5701 0.8510 -12.3310 44 1 3.6626 1.1794 -2.1330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068881041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:08 Heat of formation + Delta-G solvation = -134.132015 kcal Electronic energy + Delta-G solvation = -24656.032031 eV Core-core repulsion = 20891.992106 eV Total energy + Delta-G solvation = -3764.039926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.59387 -38.61444 -38.17252 -37.04894 -36.48960 -36.34461 -34.23843 -32.91219 -31.92898 -30.14098 -28.20421 -26.71103 -26.22126 -25.38045 -23.04111 -22.24971 -21.77323 -20.36234 -18.97227 -18.65638 -17.88768 -17.35667 -17.23616 -17.15377 -16.98324 -16.45559 -16.23821 -16.15466 -15.86231 -15.53429 -15.01759 -14.87091 -14.25830 -14.19784 -13.94796 -13.67130 -13.61521 -13.43701 -13.22240 -13.19404 -13.12786 -13.10392 -13.03035 -12.68653 -12.53842 -12.32803 -11.93733 -11.85780 -11.83365 -11.63036 -11.40331 -11.29633 -10.76991 -10.64822 -10.40197 -9.81043 -9.75408 -8.29358 -6.35282 -0.74891 0.27788 0.41152 1.37331 1.40028 1.51615 1.84155 2.36902 2.62714 2.78939 3.05843 3.18822 3.27763 3.61910 3.73486 3.85073 3.95569 3.98115 4.18262 4.28007 4.34245 4.36742 4.43398 4.46791 4.50867 4.56851 4.60828 4.64107 4.76046 4.84180 4.88478 4.90636 4.98368 5.04677 5.13317 5.35885 5.47494 5.50125 5.60460 5.62518 5.63434 6.02834 6.07915 6.21063 6.25913 6.73170 7.29347 8.87630 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012966 B = 0.002545 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.014678 B =10998.541973 C =12705.008182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.101 3.899 4 C -0.109 4.109 5 C -0.099 4.099 6 C -0.129 4.129 7 C -0.106 4.106 8 C -0.107 4.107 9 C 0.147 3.853 10 N -1.105 6.105 11 S 2.627 3.373 12 O -0.995 6.995 13 O -0.992 6.992 14 C -0.609 4.609 15 C -0.105 4.105 16 C -0.006 4.006 17 C -0.544 4.544 18 H 0.029 0.971 19 C -0.001 4.001 20 N -0.953 5.953 21 Si 0.956 3.044 22 H -0.265 1.265 23 H -0.286 1.286 24 H -0.237 1.237 25 C -0.089 4.089 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.131 0.869 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.424 0.576 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.267 0.733 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.832 -1.772 29.615 35.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.025 3.975 4 C -0.109 4.109 5 C -0.117 4.117 6 C -0.146 4.146 7 C -0.125 4.125 8 C -0.108 4.108 9 C 0.022 3.978 10 N -0.866 5.866 11 S 2.723 3.277 12 O -0.985 6.985 13 O -0.982 6.982 14 C -0.741 4.741 15 C -0.144 4.144 16 C -0.044 4.044 17 C -0.582 4.582 18 H 0.047 0.953 19 C -0.197 4.197 20 N -0.593 5.593 21 Si 0.778 3.222 22 H -0.190 1.190 23 H -0.212 1.212 24 H -0.160 1.160 25 C -0.108 4.108 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.149 0.851 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.260 0.740 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.751 -1.702 29.498 34.469 hybrid contribution -0.853 0.061 -0.845 1.202 sum -18.604 -1.640 28.653 34.202 Atomic orbital electron populations 1.22928 0.79434 1.03737 1.01025 1.87932 1.21372 1.28308 1.95629 1.21429 0.89043 0.84907 1.02135 1.19815 0.94887 1.02450 0.93736 1.21345 0.94569 0.97725 0.98080 1.21409 0.94407 1.00102 0.98726 1.21413 1.00769 0.98052 0.92287 1.19791 0.93746 1.02736 0.94564 1.20444 1.00318 0.82532 0.94522 1.55385 1.62231 1.14222 1.54809 1.04275 0.74173 0.73314 0.75964 1.93539 1.86439 1.31441 1.87123 1.93535 1.50963 1.73162 1.80493 1.30504 1.12320 1.15836 1.15411 1.21182 0.97503 1.01710 0.93995 1.19513 0.95873 0.97119 0.91913 1.21575 1.03497 1.38444 0.94664 0.95261 1.26135 1.01877 0.96330 0.95399 1.70091 1.39025 1.48543 1.01688 0.85578 0.78721 0.78745 0.79117 1.19004 1.21242 1.15989 1.21180 0.93422 0.97691 0.98462 0.92828 0.93139 0.88910 0.91049 0.91400 0.84411 0.83872 0.85119 0.89373 0.88288 0.73995 0.82541 0.82490 0.91985 0.91830 0.94828 0.95071 0.92466 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -6.46 10.69 -148.98 -1.59 -8.05 16 3 C 0.10 1.21 6.06 71.24 0.43 1.65 16 4 C -0.11 -1.59 5.51 -19.86 -0.11 -1.70 16 5 C -0.10 -1.33 9.70 22.27 0.22 -1.11 16 6 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 7 C -0.11 -1.65 9.70 22.27 0.22 -1.44 16 8 C -0.11 -1.66 5.28 -19.87 -0.10 -1.77 16 9 C 0.15 2.25 6.26 85.63 0.54 2.78 16 10 N -1.11 -19.48 5.88 -190.80 -1.12 -20.60 16 11 S 2.63 68.01 5.46 -56.49 -0.31 67.70 16 12 O -1.00 -32.84 18.08 -127.65 -2.31 -35.15 16 13 O -0.99 -32.30 17.50 -127.65 -2.23 -34.54 16 14 C -0.61 -15.12 6.07 71.98 0.44 -14.69 16 15 C -0.10 -3.92 5.16 30.59 0.16 -3.76 16 16 C -0.01 -0.25 4.04 29.85 0.12 -0.13 16 17 C -0.54 -31.47 9.66 25.60 0.25 -31.22 16 18 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 19 C 0.00 -0.05 5.47 84.65 0.46 0.41 16 20 N -0.95 -60.26 13.96 21.45 0.30 -59.96 16 21 Si 0.96 43.05 27.47 68.60 1.88 44.93 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 23 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 24 H -0.24 -9.50 6.54 99.48 0.65 -8.85 16 25 C -0.09 -1.31 9.36 22.27 0.21 -1.10 16 26 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 30 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 31 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 32 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.09 1.42 7.64 -2.39 -0.02 1.41 16 35 H 0.10 1.06 8.09 -2.39 -0.02 1.04 16 36 H 0.42 6.40 8.61 -96.75 -0.83 5.57 16 37 H 0.16 3.00 8.14 -2.40 -0.02 2.98 16 38 H 0.16 3.08 8.14 -2.39 -0.02 3.06 16 39 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 40 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.03 1.41 7.20 -2.39 -0.02 1.40 16 42 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 43 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 44 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -81.47 383.90 -0.99 -82.46 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.10 Total: 15.32 kcal Atomic # 6 Polarization: -56.41 SS G_CDS: 4.29 Total: -52.12 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -0.82 Total: -80.56 kcal Atomic # 8 Polarization: -71.60 SS G_CDS: -6.13 Total: -77.73 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.88 Total: 44.93 kcal Atomic # 16 Polarization: 68.01 SS G_CDS: -0.31 Total: 67.70 kcal Total: -81.47 -0.99 -82.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068881041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.675 kcal (2) G-P(sol) polarization free energy of solvation -81.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds