Wall clock time and date at job start Tue Mar 31 2020 14:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 117.00104 * 2 1 4 4 C 1.38638 * 119.99229 * 180.02562 * 3 2 1 5 5 C 1.38832 * 119.98228 * 180.02562 * 4 3 2 6 6 N 1.39835 * 120.01863 * 180.02562 * 5 4 3 7 7 C 1.34781 * 119.99971 * 34.65050 * 6 5 4 8 8 O 1.21560 * 119.99739 * 5.59603 * 7 6 5 9 9 C 1.47850 * 119.99822 * 185.59177 * 7 6 5 10 10 C 1.39934 * 120.02967 * 0.02562 * 9 7 6 11 11 C 1.38324 * 120.35734 * 180.02562 * 10 9 7 12 12 C 1.37755 * 120.41724 * 359.97438 * 11 10 9 13 13 C 1.40755 * 120.03996 * 359.97438 * 12 11 10 14 14 C 1.41440 * 120.17888 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99560 * 325.60915 * 14 13 12 16 16 C 1.39937 * 119.99878 * 145.59942 * 14 13 12 17 17 N 1.30824 * 120.00061 * 354.56988 * 16 14 13 18 18 Si 1.86804 * 119.99754 * 174.56826 * 16 14 13 19 19 H 1.48504 * 109.46835 * 60.00131 * 18 16 14 20 20 H 1.48502 * 109.47108 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47142 * 300.00344 * 18 16 14 22 22 C 1.39009 * 120.02472 * 180.02562 * 9 7 6 23 23 C 1.38838 * 119.96757 * 0.26608 * 5 4 3 24 24 C 1.38643 * 119.98030 * 359.45777 * 23 5 4 25 25 O 1.35896 * 119.99454 * 180.26987 * 24 23 5 26 26 C 1.42902 * 117.00184 * 180.26970 * 25 24 23 27 27 C 1.38693 * 119.98838 * 0.02562 * 3 2 1 28 28 H 1.08993 * 109.47374 * 300.00484 * 1 2 3 29 29 H 1.09004 * 109.46787 * 60.00377 * 1 2 3 30 30 H 1.09004 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00642 * 0.04011 * 4 3 2 32 32 H 0.97000 * 120.00308 * 214.65218 * 6 5 4 33 33 H 1.08002 * 119.82014 * 0.02562 * 10 9 7 34 34 H 1.08003 * 119.79025 * 179.97438 * 11 10 9 35 35 H 1.07997 * 119.98506 * 180.02562 * 12 11 10 36 36 H 0.97008 * 119.99831 * 179.97438 * 17 16 14 37 37 H 1.07997 * 120.20561 * 0.27775 * 22 9 7 38 38 H 1.07999 * 120.00917 * 179.70422 * 23 5 4 39 39 H 1.08997 * 109.47143 * 179.97438 * 26 25 24 40 40 H 1.08996 * 109.47315 * 300.00802 * 26 25 24 41 41 H 1.08998 * 109.46527 * 60.00397 * 26 25 24 42 42 H 1.08004 * 119.98440 * 359.95897 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4305 1.2832 -0.0005 5 6 4.0606 2.5203 0.0000 6 7 5.4570 2.5942 -0.0011 7 6 6.1801 1.6715 -0.6661 8 8 5.6194 0.8357 -1.3479 9 6 7.6552 1.6759 -0.5664 10 6 8.3012 2.6374 0.2187 11 6 9.6809 2.6481 0.3164 12 6 10.4351 1.7126 -0.3572 13 6 9.8031 0.7370 -1.1509 14 6 10.5745 -0.2253 -1.8433 15 1 11.5418 0.0432 -2.2416 16 6 10.0845 -1.5251 -2.0120 17 7 8.9632 -1.8809 -1.4396 18 14 11.0315 -2.7522 -3.0546 19 1 12.3853 -2.9512 -2.4776 20 1 10.3069 -4.0483 -3.0742 21 1 11.1554 -2.2328 -4.4403 22 6 8.4016 0.7248 -1.2525 23 6 3.3036 3.6842 0.0067 24 6 1.9192 3.6102 0.0014 25 8 1.1779 4.7492 0.0024 26 6 -0.2431 4.5985 0.0027 27 6 1.2904 2.3739 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 4.0187 0.3775 -0.0016 32 1 5.9052 3.3094 0.4768 33 1 7.7193 3.3751 0.7512 34 1 10.1700 3.3947 0.9246 35 1 11.5119 1.7272 -0.2756 36 1 8.6234 -2.7819 -1.5569 37 1 7.9077 -0.0164 -1.8632 38 1 3.7931 4.6469 0.0119 39 1 -0.7128 5.5821 0.0040 40 1 -0.5506 4.0497 -0.8874 41 1 -0.5499 4.0487 0.8925 42 1 0.2119 2.3169 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077923853.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:46 Heat of formation + Delta-G solvation = -79.529652 kcal Electronic energy + Delta-G solvation = -26514.330291 eV Core-core repulsion = 22617.214150 eV Total energy + Delta-G solvation = -3897.116141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.96863 -40.95674 -39.82645 -39.07214 -37.77742 -35.66461 -35.13799 -32.22648 -31.39164 -31.31973 -30.21109 -28.71713 -27.51673 -27.19922 -25.05494 -23.65240 -22.95379 -22.50767 -21.27808 -20.00359 -19.58201 -18.12992 -17.85616 -17.45323 -17.06630 -17.01835 -16.82305 -16.70616 -16.43194 -16.41044 -15.69683 -15.68372 -15.54247 -15.04824 -14.52571 -14.31523 -14.25857 -13.74709 -13.55431 -13.46150 -13.25808 -12.91147 -12.82845 -12.56045 -12.48211 -12.36388 -12.26771 -12.21522 -12.08051 -11.90300 -11.52385 -11.12996 -10.94960 -10.75823 -9.58259 -9.32418 -9.20914 -9.10806 -8.57916 -6.42570 -0.02853 0.37516 0.45184 0.99826 1.36945 1.47131 1.49694 1.75742 1.97499 2.21518 2.30185 2.46842 2.65430 2.82810 3.63189 3.79839 3.90471 3.97037 4.04209 4.18461 4.30942 4.34823 4.36606 4.41224 4.41375 4.50135 4.54338 4.67896 4.75366 4.84395 4.89672 5.06460 5.12657 5.13690 5.17857 5.23671 5.31408 5.48742 5.67163 5.82109 5.86700 6.03774 6.15638 6.26308 6.39978 6.46839 6.59366 6.90003 6.92659 7.10477 8.38995 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016466 B = 0.002876 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.093495 B = 9734.969662 C =11138.395251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.338 6.338 3 C 0.178 3.822 4 C -0.224 4.224 5 C 0.221 3.779 6 N -0.656 5.656 7 C 0.564 3.436 8 O -0.559 6.559 9 C -0.144 4.144 10 C -0.182 4.182 11 C -0.100 4.100 12 C -0.199 4.199 13 C 0.065 3.935 14 C -0.502 4.502 15 H 0.084 0.916 16 C 0.024 3.976 17 N -0.844 5.844 18 Si 0.986 3.014 19 H -0.254 1.254 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.110 4.110 23 C -0.218 4.218 24 C 0.186 3.814 25 O -0.321 6.321 26 C 0.014 3.986 27 C -0.303 4.303 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.428 0.572 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.113 0.887 36 H 0.283 0.717 37 H 0.095 0.905 38 H 0.156 0.844 39 H 0.125 0.875 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.031 11.182 5.535 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.251 6.251 3 C 0.131 3.869 4 C -0.245 4.245 5 C 0.126 3.874 6 N -0.303 5.303 7 C 0.356 3.644 8 O -0.437 6.437 9 C -0.148 4.148 10 C -0.201 4.201 11 C -0.118 4.118 12 C -0.218 4.218 13 C 0.063 3.937 14 C -0.533 4.533 15 H 0.102 0.898 16 C -0.188 4.188 17 N -0.471 5.471 18 Si 0.807 3.193 19 H -0.177 1.177 20 H -0.200 1.200 21 H -0.184 1.184 22 C -0.131 4.131 23 C -0.239 4.239 24 C 0.139 3.861 25 O -0.234 6.234 26 C -0.080 4.080 27 C -0.323 4.323 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.270 0.730 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.131 0.869 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.173 0.827 39 H 0.143 0.857 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -18.390 10.392 5.102 21.730 hybrid contribution 0.315 -0.952 -0.358 1.065 sum -18.075 9.439 4.744 20.936 Atomic orbital electron populations 1.23438 0.75829 1.05833 1.02718 1.86113 1.24155 1.26724 1.88120 1.18450 0.90821 0.84828 0.92823 1.20170 0.92837 0.97741 1.13765 1.17060 0.82740 0.92502 0.95144 1.43288 1.03823 1.30860 1.52314 1.18926 0.88158 0.79759 0.77564 1.90734 1.73215 1.38970 1.40800 1.19628 0.90172 1.00619 1.04333 1.20969 0.95085 1.00306 1.03750 1.20984 0.93470 0.98329 0.99018 1.21586 0.99398 0.99886 1.00959 1.17958 0.91730 0.92611 0.91396 1.19784 1.04552 0.95297 1.33667 0.89813 1.26814 0.95536 1.01316 0.95137 1.69859 1.19964 1.20737 1.36538 0.85193 0.78896 0.76346 0.78912 1.17744 1.20015 1.18442 1.21442 0.94600 0.97142 0.99914 1.20028 0.91285 0.97841 1.14727 1.18311 0.90359 0.85171 0.92291 1.86074 1.21186 1.28142 1.88003 1.23443 0.76166 1.05901 1.02472 1.21365 1.01694 0.90565 1.18695 0.90744 0.91332 0.86402 0.87717 0.73048 0.84020 0.83765 0.86872 0.90695 0.88665 0.82683 0.85706 0.91730 0.91282 0.81549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -9.78 10.49 -92.44 -0.97 -10.75 16 3 C 0.18 5.47 6.68 22.47 0.15 5.62 16 4 C -0.22 -8.42 8.58 22.51 0.19 -8.23 16 5 C 0.22 7.42 6.25 38.15 0.24 7.65 16 6 N -0.66 -22.43 5.28 -306.18 -1.62 -24.05 16 7 C 0.56 25.46 7.49 86.79 0.65 26.11 16 8 O -0.56 -29.89 14.12 -3.90 -0.06 -29.95 16 9 C -0.14 -6.79 5.87 -20.14 -0.12 -6.91 16 10 C -0.18 -6.90 9.54 22.70 0.22 -6.69 16 11 C -0.10 -3.81 10.01 22.18 0.22 -3.59 16 12 C -0.20 -9.07 9.78 22.77 0.22 -8.85 16 13 C 0.07 3.53 5.50 -21.32 -0.12 3.41 16 14 C -0.50 -27.55 9.04 23.47 0.21 -27.34 16 15 H 0.08 4.31 7.85 -2.91 -0.02 4.28 16 16 C 0.02 1.30 5.31 85.25 0.45 1.75 16 17 N -0.84 -48.36 10.97 21.82 0.24 -48.12 16 18 Si 0.99 40.67 29.56 68.60 2.03 42.69 16 19 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 20 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 22 C -0.11 -6.15 8.16 23.01 0.19 -5.96 16 23 C -0.22 -5.86 9.90 22.51 0.22 -5.64 16 24 C 0.19 4.49 6.68 22.48 0.15 4.64 16 25 O -0.32 -6.30 10.49 -92.39 -0.97 -7.27 16 26 C 0.01 0.14 9.81 113.37 1.11 1.26 16 27 C -0.30 -7.07 8.02 22.49 0.18 -6.89 16 28 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 29 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 30 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 4.77 6.52 -2.91 -0.02 4.75 16 32 H 0.43 11.20 6.86 -92.71 -0.64 10.56 16 33 H 0.14 3.94 6.40 -2.91 -0.02 3.92 16 34 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 35 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 36 H 0.28 15.12 8.30 -92.70 -0.77 14.35 16 37 H 0.10 5.98 6.07 -2.91 -0.02 5.97 16 38 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 39 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 0.56 7.66 -2.39 -0.02 0.54 16 41 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 42 H 0.17 2.56 4.51 -2.91 -0.01 2.55 16 Total: -1.00 -75.91 356.27 4.39 -71.52 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: 0.44 Total: 34.24 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 5.29 Total: -28.31 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: -1.38 Total: -72.17 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -1.99 Total: -47.97 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal Total: -75.91 4.39 -71.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077923853.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.011 kcal (2) G-P(sol) polarization free energy of solvation -75.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds