Wall clock time and date at job start Tue Mar 31 2020 14:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99932 * 2 1 4 4 C 1.53003 * 109.47124 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46969 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47075 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47128 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46698 * 179.97438 * 7 6 5 9 9 S 1.65602 * 119.99510 * 164.72670 * 8 7 6 10 10 O 1.42106 * 106.40261 * 178.54339 * 9 8 7 11 11 O 1.42097 * 106.40533 * 311.46033 * 9 8 7 12 12 C 1.76200 * 107.22079 * 65.00170 * 9 8 7 13 13 C 1.38630 * 119.74993 * 269.72817 * 12 9 8 14 14 C 1.37618 * 120.24695 * 179.71446 * 13 12 9 15 15 C 1.40719 * 119.74378 * 0.57642 * 14 13 12 16 16 C 1.41396 * 120.24427 * 179.67814 * 15 14 13 17 17 H 1.07991 * 120.00468 * 155.30906 * 16 15 14 18 18 C 1.39949 * 119.99931 * 335.31140 * 16 15 14 19 19 N 1.30824 * 120.00276 * 342.22899 * 18 16 15 20 20 Si 1.86800 * 120.00191 * 162.23310 * 18 16 15 21 21 H 1.48501 * 109.47159 * 94.66023 * 20 18 16 22 22 H 1.48499 * 109.47216 * 214.66410 * 20 18 16 23 23 H 1.48502 * 109.47008 * 334.66239 * 20 18 16 24 24 C 1.40711 * 119.51194 * 359.69948 * 15 14 13 25 25 C 1.37614 * 119.74678 * 359.97438 * 24 15 14 26 26 H 1.09005 * 109.47074 * 299.99797 * 1 2 3 27 27 H 1.09000 * 109.47586 * 59.99482 * 1 2 3 28 28 H 1.08999 * 109.47400 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47278 * 60.00039 * 3 2 1 30 30 H 1.09007 * 109.47290 * 300.00289 * 3 2 1 31 31 H 1.08997 * 109.47451 * 59.99606 * 4 3 2 32 32 H 1.08996 * 109.46679 * 299.99558 * 4 3 2 33 33 H 1.08997 * 109.47394 * 59.99524 * 5 4 3 34 34 H 1.08996 * 109.47022 * 299.99302 * 5 4 3 35 35 H 1.09007 * 109.46944 * 59.99848 * 6 5 4 36 36 H 1.09007 * 109.47090 * 300.00206 * 6 5 4 37 37 H 1.09003 * 109.47112 * 60.00792 * 7 6 5 38 38 H 1.08996 * 109.47306 * 299.99889 * 7 6 5 39 39 H 0.97002 * 120.00488 * 345.00798 * 8 7 6 40 40 H 1.08001 * 119.87848 * 359.97438 * 13 12 9 41 41 H 1.08005 * 120.12838 * 180.27790 * 14 13 12 42 42 H 0.96993 * 120.00542 * 180.02562 * 19 18 16 43 43 H 1.07998 * 120.12820 * 179.97438 * 24 15 14 44 44 H 1.07998 * 119.87955 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 0.0000 6 6 5.6829 2.4617 0.0000 7 6 6.3052 3.8594 0.0000 8 7 7.7656 3.7437 0.0006 9 16 8.7004 5.0574 -0.3770 10 8 10.0522 4.6365 -0.2551 11 8 8.1613 5.6030 -1.5732 12 6 8.4391 6.2627 0.8814 13 6 7.4302 7.2021 0.7354 14 6 7.2133 8.1444 1.7146 15 6 8.0281 8.1594 2.8618 16 6 7.8190 9.1271 3.8713 17 1 8.1331 8.9267 4.8849 18 6 7.2049 10.3447 3.5569 19 7 7.1382 10.7416 2.3121 20 14 6.4805 11.4035 4.9148 21 1 7.4806 12.4155 5.3402 22 1 5.2643 12.0907 4.4111 23 1 6.1208 10.5459 6.0725 24 6 9.0529 7.2046 2.9966 25 6 9.2473 6.2674 2.0079 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6885 1.8465 -0.8900 31 1 3.8568 0.6439 -0.8908 32 1 3.8573 0.6437 0.8891 33 1 3.8363 3.1228 0.8904 34 1 3.8358 3.1238 -0.8896 35 1 6.0046 1.9211 -0.8903 36 1 6.0046 1.9203 0.8898 37 1 5.9837 4.4003 0.8901 38 1 5.9836 4.4003 -0.8899 39 1 8.1850 2.8965 0.2182 40 1 6.8093 7.1919 -0.1483 41 1 6.4238 8.8726 1.6009 42 1 6.7129 11.5857 2.0943 43 1 9.6844 7.2073 3.8727 44 1 10.0335 5.5338 2.1090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080733467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:01 Heat of formation + Delta-G solvation = -134.481155 kcal Electronic energy + Delta-G solvation = -24849.525434 eV Core-core repulsion = 21085.470368 eV Total energy + Delta-G solvation = -3764.055066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -38.33985 -37.57728 -36.71450 -36.32045 -35.10364 -34.05547 -33.94725 -30.26155 -30.02641 -29.46904 -26.97360 -25.81990 -24.85268 -22.05748 -21.54236 -21.26713 -21.12335 -18.80031 -17.62175 -17.07525 -16.63270 -16.56315 -16.52802 -15.77589 -15.52976 -15.39976 -15.23033 -14.35626 -14.14480 -13.94987 -13.39593 -13.22640 -13.02097 -12.64238 -12.54148 -12.42333 -12.19224 -11.89528 -11.76109 -11.60142 -11.52239 -11.42610 -11.36722 -11.27578 -11.21577 -11.15177 -10.87634 -10.80815 -10.74582 -10.44717 -9.97531 -9.76370 -9.64444 -9.49566 -9.02553 -7.96070 -7.70760 -7.14557 -4.80467 1.27780 2.25543 2.86424 2.88226 2.91911 2.94797 3.41717 3.65240 3.77301 4.24142 4.53488 4.66772 4.69924 4.80844 4.96160 4.97502 5.04917 5.13007 5.22583 5.27007 5.31757 5.38351 5.43261 5.49996 5.65348 5.72312 5.82609 5.89082 6.06491 6.09524 6.12414 6.17438 6.31703 6.67619 6.70881 6.84566 6.90903 7.04781 7.30829 7.35188 7.42639 7.63079 7.76449 7.96668 8.31363 8.50851 8.64640 9.77064 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009634 B = 0.002852 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.731521 B = 9816.277134 C =12071.276427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.059 3.941 4 C -0.118 4.118 5 C -0.118 4.118 6 C -0.123 4.123 7 C 0.120 3.880 8 N -1.127 6.127 9 S 2.695 3.305 10 O -0.987 6.987 11 O -0.985 6.985 12 C -0.787 4.787 13 C -0.016 4.016 14 C -0.184 4.184 15 C 0.139 3.861 16 C -0.436 4.436 17 H 0.087 0.913 18 C 0.072 3.928 19 N -0.765 5.765 20 Si 0.916 3.084 21 H -0.266 1.266 22 H -0.271 1.271 23 H -0.257 1.257 24 C -0.239 4.239 25 C 0.002 3.998 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.409 0.591 40 H 0.103 0.897 41 H 0.122 0.878 42 H 0.289 0.711 43 H 0.100 0.900 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.568 -12.809 -1.697 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.018 4.018 4 C -0.155 4.155 5 C -0.156 4.156 6 C -0.162 4.162 7 C -0.007 4.007 8 N -0.884 5.884 9 S 2.794 3.206 10 O -0.978 6.978 11 O -0.975 6.975 12 C -0.883 4.883 13 C -0.037 4.037 14 C -0.204 4.204 15 C 0.136 3.864 16 C -0.463 4.463 17 H 0.105 0.895 18 C -0.150 4.150 19 N -0.387 5.387 20 Si 0.739 3.261 21 H -0.191 1.191 22 H -0.196 1.196 23 H -0.180 1.180 24 C -0.260 4.260 25 C -0.018 4.018 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.242 0.758 40 H 0.121 0.879 41 H 0.140 0.860 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.077 -12.552 -2.688 16.320 hybrid contribution -0.658 0.816 1.296 1.667 sum -10.736 -11.736 -1.392 15.966 Atomic orbital electron populations 1.22732 0.81093 1.02666 1.00022 1.87864 1.19689 1.28426 1.95451 1.22616 0.94410 0.84420 1.00343 1.21518 0.92697 0.97877 1.03426 1.21466 0.94871 0.96267 1.03042 1.21746 0.94756 0.96809 1.02924 1.21208 0.79188 0.97845 1.02439 1.55723 1.15908 1.27704 1.89038 1.01153 0.72178 0.72868 0.74437 1.93489 1.33864 1.82523 1.87896 1.93480 1.80079 1.78721 1.45207 1.29148 1.16550 1.22777 1.19846 1.20260 0.93796 0.92969 0.96640 1.21336 1.02380 1.00589 0.96092 1.17856 0.87548 0.89536 0.91506 1.19926 1.31212 0.98350 0.96832 0.89475 1.26144 0.93495 0.98628 0.96756 1.69823 1.29471 1.19886 1.19558 0.86154 0.79224 0.79593 0.81108 1.19103 1.19592 1.18016 1.21023 1.02240 1.02119 1.00601 1.20165 0.94228 0.95745 0.91633 0.94062 0.94085 0.89721 0.93168 0.93229 0.91084 0.91046 0.91159 0.91270 0.91200 0.91157 0.91440 0.90605 0.75845 0.87891 0.86043 0.89954 0.88219 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.40 -3.94 10.70 -35.23 -0.38 -4.32 16 3 C 0.06 0.50 5.94 37.16 0.22 0.72 16 4 C -0.12 -0.99 5.58 -26.73 -0.15 -1.14 16 5 C -0.12 -1.01 5.21 -26.73 -0.14 -1.15 16 6 C -0.12 -1.18 5.36 -26.73 -0.14 -1.33 16 7 C 0.12 1.52 6.22 -4.04 -0.03 1.49 16 8 N -1.13 -16.09 6.00 -10.61 -0.06 -16.16 16 9 S 2.70 51.31 5.73 -107.50 -0.62 50.70 16 10 O -0.99 -20.86 17.26 -57.17 -0.99 -21.85 16 11 O -0.98 -21.03 16.72 -57.17 -0.96 -21.98 16 12 C -0.79 -17.16 5.97 -39.29 -0.23 -17.39 16 13 C -0.02 -0.37 9.49 -39.66 -0.38 -0.75 16 14 C -0.18 -4.54 8.70 -38.87 -0.34 -4.88 16 15 C 0.14 3.51 5.57 -106.82 -0.60 2.91 16 16 C -0.44 -10.62 9.05 -37.74 -0.34 -10.96 16 17 H 0.09 2.00 7.91 -52.49 -0.41 1.59 16 18 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 19 N -0.77 -18.27 10.97 55.55 0.61 -17.66 16 20 Si 0.92 16.86 29.59 -169.99 -5.03 11.83 16 21 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 22 H -0.27 -4.88 7.11 56.52 0.40 -4.47 16 23 H -0.26 -4.68 7.11 56.52 0.40 -4.27 16 24 C -0.24 -5.64 9.80 -38.88 -0.38 -6.03 16 25 C 0.00 0.05 9.49 -39.66 -0.38 -0.32 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.99 7.75 -51.93 -0.40 0.59 16 39 H 0.41 4.83 8.65 -34.47 -0.30 4.53 16 40 H 0.10 2.16 7.59 -52.49 -0.40 1.77 16 41 H 0.12 3.03 6.18 -52.48 -0.32 2.70 16 42 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 43 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 44 H 0.10 2.09 7.60 -52.49 -0.40 1.69 16 LS Contribution 380.56 15.07 5.73 5.73 Total: -1.00 -30.80 380.56 -10.41 -41.21 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.87 Total: 8.43 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: -1.86 Total: -35.93 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.55 Total: -33.82 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -2.32 Total: -48.15 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Atomic # 16 Polarization: 51.31 SS G_CDS: -0.62 Total: 50.70 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.80 -10.41 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080733467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.276 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds