Wall clock time and date at job start Tue Mar 31 2020 14:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35898 * 117.00309 * 2 1 4 4 C 1.38801 * 120.02063 * 0.02562 * 3 2 1 5 5 C 1.38171 * 120.08612 * 179.97438 * 4 3 2 6 6 C 1.38166 * 120.12477 * 359.67913 * 5 4 3 7 7 C 1.38890 * 120.03569 * 0.59843 * 6 5 4 8 8 N 1.39922 * 120.04017 * 179.69818 * 7 6 5 9 9 C 1.34779 * 119.99703 * 213.11957 * 8 7 6 10 10 O 1.21280 * 120.00264 * 5.34530 * 9 8 7 11 11 C 1.50708 * 119.99630 * 185.34507 * 9 8 7 12 12 C 1.50701 * 109.46806 * 180.02562 * 11 9 8 13 13 C 1.38324 * 119.96357 * 270.01720 * 12 11 9 14 14 C 1.38275 * 120.14003 * 180.02562 * 13 12 11 15 15 C 1.38123 * 120.06612 * 359.67945 * 14 13 12 16 16 C 1.38857 * 119.93092 * 0.59807 * 15 14 13 17 17 O 1.35749 * 120.07047 * 179.69777 * 16 15 14 18 18 C 1.34838 * 116.99904 * 353.91635 * 17 16 15 19 19 H 1.08003 * 119.99816 * 354.60585 * 18 17 16 20 20 C 1.38648 * 120.00053 * 174.61368 * 18 17 16 21 21 N 1.31560 * 120.00320 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00054 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47116 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47416 * 119.99777 * 22 20 18 25 25 H 1.48505 * 109.47121 * 239.99587 * 22 20 18 26 26 C 1.38074 * 119.96708 * 89.99961 * 12 11 9 27 27 C 1.38583 * 120.01877 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47243 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46542 * 299.99671 * 1 2 3 30 30 H 1.09001 * 109.47337 * 59.99377 * 1 2 3 31 31 H 1.08006 * 119.95758 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.93578 * 180.02562 * 5 4 3 33 33 H 1.07993 * 119.98476 * 180.30277 * 6 5 4 34 34 H 0.96994 * 120.00329 * 33.12248 * 8 7 6 35 35 H 1.08991 * 109.47479 * 59.99519 * 11 9 8 36 36 H 1.09003 * 109.46776 * 299.99443 * 11 9 8 37 37 H 1.08007 * 119.92759 * 359.97438 * 13 12 11 38 38 H 1.07998 * 119.96253 * 179.97438 * 14 13 12 39 39 H 1.08000 * 120.03461 * 180.31479 * 15 14 13 40 40 H 0.97001 * 120.00291 * 180.02562 * 21 20 18 41 41 H 1.08000 * 120.03663 * 0.03859 * 26 12 11 42 42 H 1.07997 * 120.06391 * 0.04984 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2905 2.3752 0.0005 5 6 1.9165 3.6070 0.0011 6 6 3.2960 3.6838 0.0078 7 6 4.0570 2.5220 0.0014 8 7 5.4541 2.5997 0.0018 9 6 6.1812 1.6646 -0.6411 10 8 5.6254 0.8117 -1.3003 11 6 7.6848 1.6788 -0.5407 12 6 8.2527 0.5378 -1.3450 13 6 8.4550 -0.6940 -0.7491 14 6 8.9763 -1.7433 -1.4835 15 6 9.2905 -1.5659 -2.8168 16 6 9.0940 -0.3290 -3.4163 17 8 9.4076 -0.1499 -4.7249 18 6 10.0221 -1.1728 -5.3527 19 1 10.3212 -2.0476 -4.7943 20 6 10.2701 -1.1016 -6.7149 21 7 9.9054 -0.0363 -7.3952 22 14 11.1220 -2.5185 -7.5845 23 1 11.4278 -3.5898 -6.6026 24 1 10.2312 -3.0567 -8.6437 25 1 12.3849 -2.0350 -8.1983 26 6 8.5701 0.7230 -2.6759 27 6 3.4299 1.2837 -0.0005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.2120 2.3183 0.0005 32 1 1.3263 4.5115 0.0019 33 1 3.7828 4.6478 0.0131 34 1 5.8992 3.3266 0.4648 35 1 7.9804 1.5708 0.5028 36 1 8.0660 2.6227 -0.9305 37 1 8.2060 -0.8363 0.2922 38 1 9.1335 -2.7037 -1.0153 39 1 9.6929 -2.3872 -3.3912 40 1 10.0786 0.0134 -8.3483 41 1 8.4123 1.6851 -3.1405 42 1 4.0194 0.3788 -0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089588376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:45 Heat of formation + Delta-G solvation = -42.688392 kcal Electronic energy + Delta-G solvation = -26061.541985 eV Core-core repulsion = 22166.023401 eV Total energy + Delta-G solvation = -3895.518584 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.77474 -39.70145 -38.84459 -37.51342 -36.40346 -34.54532 -32.41546 -32.04042 -30.81045 -29.64975 -29.05732 -27.51408 -26.88531 -25.20809 -23.29555 -22.34610 -21.59537 -21.02432 -20.17948 -18.71055 -17.60478 -17.19948 -16.91182 -16.34902 -16.13238 -15.92343 -15.83821 -15.39251 -14.95205 -14.43033 -14.33771 -14.04618 -13.70688 -13.63069 -13.47250 -13.37998 -12.91374 -12.59622 -12.53857 -12.37131 -12.01717 -11.86947 -11.55818 -11.46101 -11.26245 -11.21467 -10.85003 -10.71588 -10.56326 -10.38734 -10.35059 -9.78075 -9.31891 -8.79163 -8.52312 -8.19994 -8.03441 -7.17365 -6.39589 -3.98509 1.10714 1.29517 2.10430 2.43320 2.64668 2.87675 3.15700 3.17243 3.22862 3.27196 3.66338 4.00921 4.53789 4.61144 4.83575 4.85916 4.88284 4.92164 4.99455 5.03710 5.17108 5.19034 5.22101 5.24490 5.38863 5.48502 5.64593 5.72880 5.79053 5.97321 6.06129 6.10189 6.21679 6.24199 6.28628 6.38206 6.69535 6.71881 6.95832 7.12547 7.25393 7.29155 7.29667 7.41090 7.48636 7.86998 8.05438 8.15021 9.06286 9.77378 10.78827 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.002425 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.359547 B =11545.077031 C =11941.490451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.147 3.853 4 C -0.230 4.230 5 C -0.062 4.062 6 C -0.187 4.187 7 C 0.194 3.806 8 N -0.681 5.681 9 C 0.511 3.489 10 O -0.491 6.491 11 C -0.091 4.091 12 C -0.037 4.037 13 C -0.195 4.195 14 C -0.075 4.075 15 C -0.229 4.229 16 C 0.154 3.846 17 O -0.180 6.180 18 C -0.389 4.389 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.173 4.173 27 C -0.157 4.157 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.412 0.588 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.269 0.731 41 H 0.114 0.886 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.971 6.900 18.529 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.101 3.899 4 C -0.249 4.249 5 C -0.080 4.080 6 C -0.208 4.208 7 C 0.099 3.901 8 N -0.328 5.328 9 C 0.299 3.701 10 O -0.362 6.362 11 C -0.131 4.131 12 C -0.037 4.037 13 C -0.215 4.215 14 C -0.093 4.093 15 C -0.248 4.248 16 C 0.101 3.899 17 O -0.083 6.083 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.193 4.193 27 C -0.178 4.178 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.248 0.752 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.132 0.868 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.217 6.302 17.626 23.506 hybrid contribution 0.300 -0.235 -0.285 0.476 sum -13.918 6.067 17.341 23.048 Atomic orbital electron populations 1.23056 0.78433 1.03956 1.01248 1.86111 1.21291 1.26853 1.88470 1.18773 0.91785 0.84209 0.95161 1.21174 0.99958 0.92330 1.11471 1.20664 0.93752 0.96994 0.96613 1.20789 0.94003 0.96925 1.09040 1.17385 0.82912 0.93008 0.96810 1.43703 1.04145 1.30177 1.54773 1.21063 0.90169 0.80721 0.78189 1.90804 1.72607 1.35651 1.37127 1.20593 0.90019 1.00219 1.02230 1.18620 0.98619 0.93493 0.93011 1.20349 1.08499 0.93400 0.99203 1.20681 0.97336 0.97568 0.93716 1.21193 1.09663 0.98129 0.95819 1.19279 0.92192 0.92663 0.85790 1.83993 1.66861 1.40452 1.17033 1.21356 1.35837 0.97719 0.91677 0.89104 1.25280 0.97613 0.98282 0.95416 1.70052 1.44173 1.27269 1.08426 0.85655 0.78683 0.79751 0.79378 1.19118 1.20181 1.20187 1.19941 1.07842 0.98463 0.93006 1.20335 0.91744 0.98354 1.07365 0.88242 0.92724 0.92590 0.85551 0.85477 0.85536 0.75235 0.87903 0.87888 0.87884 0.87444 0.85595 0.92149 0.86806 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.99 10.49 -19.42 -0.20 -4.19 16 3 C 0.15 1.90 6.68 -39.25 -0.26 1.64 16 4 C -0.23 -2.36 9.04 -39.40 -0.36 -2.71 16 5 C -0.06 -0.57 10.03 -39.63 -0.40 -0.97 16 6 C -0.19 -1.86 9.96 -39.37 -0.39 -2.25 16 7 C 0.19 2.40 6.28 -83.72 -0.53 1.87 16 8 N -0.68 -7.43 5.34 -9.87 -0.05 -7.48 16 9 C 0.51 7.41 7.56 -10.98 -0.08 7.32 16 10 O -0.49 -9.63 13.72 5.56 0.08 -9.55 16 11 C -0.09 -1.16 5.83 -29.03 -0.17 -1.33 16 12 C -0.04 -0.67 4.37 -104.65 -0.46 -1.13 16 13 C -0.20 -3.53 9.70 -39.54 -0.38 -3.92 16 14 C -0.07 -1.45 10.04 -39.61 -0.40 -1.85 16 15 C -0.23 -5.23 9.13 -39.39 -0.36 -5.59 16 16 C 0.15 3.89 6.65 -39.11 -0.26 3.63 16 17 O -0.18 -5.30 9.76 0.03 0.00 -5.30 16 18 C -0.39 -11.20 9.44 30.88 0.29 -10.91 16 19 H 0.09 2.43 5.30 -52.48 -0.28 2.15 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.96 13.67 55.48 0.76 -25.20 16 22 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 C -0.17 -3.81 9.64 -39.40 -0.38 -4.19 16 27 C -0.16 -2.27 8.59 -39.25 -0.34 -2.61 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 30 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 31 H 0.13 0.98 6.29 -52.48 -0.33 0.65 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.41 2.76 8.82 -40.82 -0.36 2.40 16 35 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 36 H 0.10 1.08 8.08 -51.93 -0.42 0.67 16 37 H 0.10 1.57 8.06 -52.48 -0.42 1.14 16 38 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.13 2.87 5.72 -52.49 -0.30 2.57 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 42 H 0.14 2.39 6.42 -52.49 -0.34 2.05 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -36.65 362.89 -7.46 -44.11 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -4.91 Total: 6.92 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -3.57 Total: -20.80 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.71 Total: -32.68 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.13 Total: -19.05 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.65 -7.46 -44.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089588376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.424 kcal (2) G-P(sol) polarization free energy of solvation -36.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds