Wall clock time and date at job start Tue Mar 31 2020 14:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35964 * 117.00031 * 2 1 4 4 C 1.38545 * 120.08508 * 0.02562 * 3 2 1 5 5 C 1.38248 * 120.01488 * 179.97438 * 4 3 2 6 6 C 1.38276 * 120.18034 * 359.97438 * 5 4 3 7 7 C 1.38196 * 120.16380 * 359.97438 * 6 5 4 8 8 C 1.38720 * 119.98359 * 359.74515 * 7 6 5 9 9 N 1.40122 * 120.09355 * 180.26852 * 8 7 6 10 10 C 1.34777 * 119.99450 * 24.80028 * 9 8 7 11 11 O 1.21297 * 120.00048 * 5.55687 * 10 9 8 12 12 C 1.50701 * 119.99977 * 185.56044 * 10 9 8 13 13 C 1.50706 * 109.47228 * 179.97438 * 12 10 9 14 14 C 1.38316 * 119.96597 * 269.72007 * 13 12 10 15 15 C 1.38284 * 120.13724 * 179.76153 * 14 13 12 16 16 C 1.38117 * 120.06895 * 0.52037 * 15 14 13 17 17 C 1.38859 * 119.93209 * 359.73523 * 16 15 14 18 18 O 1.35747 * 120.07034 * 179.97438 * 17 16 15 19 19 C 1.34830 * 117.00085 * 5.18784 * 18 17 16 20 20 H 1.07994 * 119.99866 * 354.98679 * 19 18 17 21 21 C 1.38649 * 120.00109 * 174.98174 * 19 18 17 22 22 N 1.31551 * 120.00204 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99970 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47370 * 89.99697 * 23 21 19 25 25 H 1.48498 * 109.47137 * 210.00072 * 23 21 19 26 26 H 1.48505 * 109.46984 * 329.99378 * 23 21 19 27 27 C 1.38083 * 119.96244 * 89.99855 * 13 12 10 28 28 H 1.08994 * 109.47448 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46919 * 59.99902 * 1 2 3 30 30 H 1.08999 * 109.47143 * 300.00002 * 1 2 3 31 31 H 1.08004 * 119.99466 * 359.94938 * 4 3 2 32 32 H 1.08003 * 119.91111 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.91607 * 179.97438 * 6 5 4 34 34 H 1.08000 * 120.00552 * 180.02562 * 7 6 5 35 35 H 0.96996 * 120.00727 * 204.79845 * 9 8 7 36 36 H 1.09002 * 109.47155 * 299.99750 * 12 10 9 37 37 H 1.08993 * 109.47518 * 60.00088 * 12 10 9 38 38 H 1.07999 * 119.93245 * 0.02562 * 14 13 12 39 39 H 1.07998 * 119.95898 * 180.25650 * 15 14 13 40 40 H 1.08004 * 120.03589 * 179.76522 * 16 15 14 41 41 H 0.97000 * 120.00534 * 180.02562 * 22 21 19 42 42 H 1.07996 * 120.03628 * 359.95322 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2935 2.3745 0.0005 5 6 1.9226 3.6055 0.0011 6 6 3.3034 3.6805 0.0016 7 6 4.0616 2.5251 0.0021 8 6 3.4374 1.2863 0.0075 9 7 4.2039 0.1134 0.0137 10 6 5.4591 0.1313 0.5044 11 8 5.8897 1.1351 1.0319 12 6 6.3275 -1.0957 0.3975 13 6 7.6724 -0.8147 1.0167 14 6 8.6991 -0.3100 0.2393 15 6 9.9331 -0.0463 0.8049 16 6 10.1472 -0.2964 2.1462 17 6 9.1202 -0.8081 2.9283 18 8 9.3277 -1.0554 4.2468 19 6 10.5177 -0.6828 4.7596 20 1 11.2844 -0.2852 4.1112 21 6 10.7571 -0.8101 6.1193 22 7 11.9180 -0.4461 6.6197 23 14 9.4311 -1.4985 7.2407 24 1 9.5748 -2.9739 7.3296 25 1 9.5708 -0.9050 8.5947 26 1 8.0935 -1.1637 6.6892 27 6 7.8801 -1.0669 2.3584 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 0.2149 2.3195 0.0001 32 1 1.3341 4.5111 0.0011 33 1 3.7904 4.6445 0.0016 34 1 5.1398 2.5867 0.0030 35 1 3.8313 -0.7115 -0.3350 36 1 5.8516 -1.9244 0.9219 37 1 6.4589 -1.3575 -0.6523 38 1 8.5353 -0.1175 -0.8107 39 1 10.7314 0.3516 0.1961 40 1 11.1124 -0.0938 2.5866 41 1 12.0856 -0.5355 7.5710 42 1 7.0792 -1.4645 2.9640 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089659982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:53 Heat of formation + Delta-G solvation = -60.774218 kcal Electronic energy + Delta-G solvation = -26285.624802 eV Core-core repulsion = 22389.321958 eV Total energy + Delta-G solvation = -3896.302844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.86821 -40.95669 -40.27591 -38.49827 -38.02858 -35.79426 -34.49218 -33.62747 -31.29570 -31.08750 -30.70755 -28.48488 -27.92716 -27.16994 -24.20899 -23.36348 -23.14642 -22.43094 -21.26946 -19.72832 -19.45899 -18.86663 -18.15933 -18.02614 -17.00994 -16.87280 -16.67295 -16.53502 -16.10847 -15.86985 -15.73585 -15.58893 -15.35204 -14.97096 -14.71579 -14.52339 -14.33196 -14.16211 -13.93367 -13.76104 -13.11825 -13.04656 -12.84276 -12.61634 -12.55750 -12.41075 -12.36172 -12.17473 -12.00833 -11.94257 -11.55673 -11.32150 -10.93466 -10.79443 -9.68781 -9.57880 -9.07195 -8.77956 -8.51109 -6.23794 0.25747 0.41660 0.46958 0.69470 1.28436 1.33629 1.49559 1.61452 2.02691 2.26767 2.32176 2.76935 2.83659 3.01422 3.16138 3.68749 3.86955 3.97315 4.01818 4.07084 4.28629 4.30414 4.40086 4.42736 4.44248 4.48465 4.53745 4.60517 4.62574 4.69975 4.78546 4.82237 4.96102 5.13528 5.23944 5.31256 5.38559 5.48921 5.60430 5.64094 5.71730 5.76097 5.82686 5.90845 6.23758 6.39280 6.45961 6.83270 7.15577 7.58361 8.60799 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015250 B = 0.002639 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.589988 B =10608.623863 C =11166.542119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.090 3.910 4 C -0.189 4.189 5 C -0.100 4.100 6 C -0.145 4.145 7 C -0.121 4.121 8 C 0.101 3.899 9 N -0.654 5.654 10 C 0.512 3.488 11 O -0.552 6.552 12 C -0.086 4.086 13 C -0.029 4.029 14 C -0.169 4.169 15 C -0.077 4.077 16 C -0.239 4.239 17 C 0.119 3.881 18 O -0.247 6.247 19 C -0.399 4.399 20 H 0.080 0.920 21 C 0.010 3.990 22 N -0.924 5.924 23 Si 0.970 3.030 24 H -0.261 1.261 25 H -0.266 1.266 26 H -0.268 1.268 27 C -0.180 4.180 28 H 0.119 0.881 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.159 0.841 32 H 0.154 0.846 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.427 0.573 36 H 0.130 0.870 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.141 0.859 40 H 0.107 0.893 41 H 0.285 0.715 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.439 0.963 -19.660 32.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C 0.042 3.958 4 C -0.208 4.208 5 C -0.119 4.119 6 C -0.164 4.164 7 C -0.141 4.141 8 C 0.006 3.994 9 N -0.300 5.300 10 C 0.302 3.698 11 O -0.429 6.429 12 C -0.125 4.125 13 C -0.030 4.030 14 C -0.187 4.187 15 C -0.095 4.095 16 C -0.259 4.259 17 C 0.070 3.930 18 O -0.155 6.155 19 C -0.476 4.476 20 H 0.098 0.902 21 C -0.189 4.189 22 N -0.565 5.565 23 Si 0.793 3.207 24 H -0.186 1.186 25 H -0.191 1.191 26 H -0.193 1.193 27 C -0.199 4.199 28 H 0.137 0.863 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.177 0.823 32 H 0.171 0.829 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.266 0.734 36 H 0.148 0.852 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.159 0.841 40 H 0.125 0.875 41 H 0.094 0.906 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -26.015 1.329 -18.951 32.213 hybrid contribution 0.205 -0.153 0.845 0.883 sum -25.810 1.175 -18.106 31.550 Atomic orbital electron populations 1.23342 0.76107 1.05626 1.02302 1.85973 1.23635 1.25911 1.89102 1.18770 0.89930 0.86122 1.00938 1.21407 1.01217 0.91247 1.06901 1.21283 0.94169 0.98257 0.98150 1.21249 0.94619 0.98209 1.02341 1.21326 1.01328 0.91135 1.00316 1.17345 0.87817 0.87515 1.06681 1.43292 1.13647 1.11621 1.61410 1.21213 0.81730 0.90487 0.76412 1.90733 1.73538 1.35838 1.42839 1.20695 0.90274 0.95625 1.05912 1.19159 0.95261 0.96958 0.91573 1.21016 0.92686 1.04169 1.00817 1.21115 0.98301 0.97107 0.92996 1.21332 0.99561 1.08772 0.96202 1.19584 0.94874 0.94865 0.83689 1.83503 1.36779 1.73999 1.21244 1.20719 0.89443 1.43509 0.93905 0.90209 1.25273 0.99350 0.96825 0.97413 1.69725 1.23826 1.47882 1.15061 0.85225 0.78889 0.79210 0.77423 1.18554 1.19101 1.19269 1.20273 0.94385 1.09327 0.95964 0.86325 0.91216 0.92078 0.82345 0.82870 0.84478 0.85277 0.73412 0.85193 0.83367 0.83262 0.84119 0.87489 0.90557 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.34 9.91 -93.14 -0.92 -6.26 16 3 C 0.09 1.75 6.70 22.60 0.15 1.90 16 4 C -0.19 -2.95 9.04 22.35 0.20 -2.74 16 5 C -0.10 -1.61 10.04 22.28 0.22 -1.39 16 6 C -0.15 -3.04 10.04 22.27 0.22 -2.82 16 7 C -0.12 -3.17 8.72 22.38 0.20 -2.97 16 8 C 0.10 2.43 6.45 38.19 0.25 2.67 16 9 N -0.65 -13.75 5.29 -303.12 -1.60 -15.35 16 10 C 0.51 13.43 7.63 87.66 0.67 14.10 16 11 O -0.55 -20.21 13.20 -3.08 -0.04 -20.25 16 12 C -0.09 -1.79 5.83 29.10 0.17 -1.62 16 13 C -0.03 -0.93 4.37 -19.88 -0.09 -1.02 16 14 C -0.17 -5.28 9.70 22.30 0.22 -5.07 16 15 C -0.08 -2.83 10.04 22.25 0.22 -2.61 16 16 C -0.24 -11.23 9.17 22.39 0.21 -11.02 16 17 C 0.12 5.94 6.65 22.58 0.15 6.09 16 18 O -0.25 -14.24 8.59 -22.71 -0.19 -14.43 16 19 C -0.40 -24.68 9.95 67.92 0.68 -24.00 16 20 H 0.08 5.15 5.43 -2.91 -0.02 5.14 16 21 C 0.01 0.57 5.49 84.83 0.47 1.04 16 22 N -0.92 -57.01 13.96 21.61 0.30 -56.71 16 23 Si 0.97 47.39 28.62 68.60 1.96 49.35 16 24 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 27 C -0.18 -7.43 9.65 22.39 0.22 -7.21 16 28 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.34 7.66 -2.39 -0.02 0.32 16 30 H 0.06 0.41 7.66 -2.39 -0.02 0.40 16 31 H 0.16 1.44 6.30 -2.91 -0.02 1.43 16 32 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 33 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.13 3.99 5.79 -2.91 -0.02 3.98 16 35 H 0.43 6.11 8.34 -92.71 -0.77 5.34 16 36 H 0.13 2.09 8.08 -2.39 -0.02 2.07 16 37 H 0.15 1.83 8.08 -2.39 -0.02 1.81 16 38 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 39 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 40 H 0.11 5.47 5.64 -2.91 -0.02 5.46 16 41 H 0.28 16.07 8.31 -92.71 -0.77 15.30 16 42 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -81.61 359.89 5.06 -76.55 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.30 Total: 22.49 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 5.26 Total: -35.40 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -1.30 Total: -72.06 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -1.16 Total: -40.94 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.96 Total: 49.35 kcal Total: -81.61 5.06 -76.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089659982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.778 kcal (2) G-P(sol) polarization free energy of solvation -81.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds