Wall clock time and date at job start Tue Mar 31 2020 14:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46906 * 270.02263 * 8 7 6 10 10 N 1.46510 * 109.46850 * 179.97438 * 9 8 7 11 11 S 1.65607 * 119.99714 * 164.99872 * 10 9 8 12 12 O 1.42100 * 104.27336 * 181.07100 * 11 10 9 13 13 O 1.42104 * 104.27665 * 308.92933 * 11 10 9 14 14 C 1.81400 * 104.44833 * 65.00129 * 11 10 9 15 15 C 1.52996 * 109.46990 * 179.97438 * 14 11 10 16 16 C 1.53005 * 109.47284 * 179.97438 * 15 14 11 17 17 C 1.50695 * 109.46830 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00850 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99557 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00271 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00078 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47474 * 59.99308 * 21 19 17 23 23 H 1.48500 * 109.47375 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46782 * 299.99609 * 21 19 17 25 25 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 26 26 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 27 27 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 28 28 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 30 30 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 31 31 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 32 32 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 33 33 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 34 34 H 1.08995 * 109.47455 * 299.99525 * 9 8 7 35 35 H 1.08993 * 109.47459 * 60.00249 * 9 8 7 36 36 H 0.96992 * 119.99710 * 345.00049 * 10 9 8 37 37 H 1.09003 * 109.46966 * 300.00036 * 14 11 10 38 38 H 1.08998 * 109.47096 * 59.99656 * 14 11 10 39 39 H 1.08998 * 109.47620 * 300.00496 * 15 14 11 40 40 H 1.09007 * 109.46965 * 60.00064 * 15 14 11 41 41 H 1.08994 * 109.46739 * 300.00296 * 16 15 14 42 42 H 1.08996 * 109.46589 * 60.00428 * 16 15 14 43 43 H 0.96992 * 120.00216 * 180.02562 * 20 19 17 44 44 H 1.08006 * 120.02917 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 6 6.0689 2.6257 -1.4438 10 7 7.5318 2.7052 -1.4449 11 16 8.3777 2.3792 -2.8308 12 8 9.7395 2.5281 -2.4533 13 8 7.8705 1.1244 -3.2640 14 6 7.8882 3.6947 -3.9798 15 6 8.6122 3.5022 -5.3138 16 6 8.1989 4.6114 -6.2833 17 6 8.9116 4.4213 -7.5973 18 1 9.5911 3.5921 -7.7283 19 6 8.6963 5.3061 -8.6327 20 7 7.8685 6.3156 -8.4735 21 14 9.5791 5.0701 -10.2618 22 1 9.2142 3.7502 -10.8361 23 1 9.1780 6.1467 -11.2027 24 1 11.0468 5.1256 -10.0420 25 6 3.4311 1.2849 -0.0001 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2128 2.3203 -0.0106 30 1 1.3339 4.5114 0.0011 31 1 3.7922 4.6381 0.0002 32 1 5.8760 3.5065 0.5126 33 1 5.9718 1.7291 0.5125 34 1 5.7537 1.7175 -1.9574 35 1 5.6579 3.4948 -1.9574 36 1 8.0048 2.9487 -0.6339 37 1 6.8110 3.6538 -4.1414 38 1 8.1557 4.6636 -3.5582 39 1 9.6894 3.5433 -5.1519 40 1 8.3451 2.5332 -5.7357 41 1 7.1219 4.5697 -6.4451 42 1 8.4658 5.5804 -5.8616 43 1 7.7167 6.9378 -9.2020 44 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109338787.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:16 Heat of formation + Delta-G solvation = -107.979361 kcal Electronic energy + Delta-G solvation = -24590.727413 eV Core-core repulsion = 20827.821551 eV Total energy + Delta-G solvation = -3762.905862 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.47499 -38.20605 -36.89179 -35.96960 -35.67964 -34.65666 -32.49818 -32.17648 -30.81490 -28.30132 -27.79720 -27.49000 -23.75340 -23.66808 -22.81676 -21.25609 -20.62586 -19.22662 -18.12520 -17.29441 -16.67048 -16.64868 -16.36952 -16.31075 -16.05673 -15.71862 -15.17175 -14.90386 -14.48410 -14.33247 -14.09649 -13.86989 -13.57483 -13.18421 -12.58520 -12.56486 -12.29090 -12.28986 -12.07984 -11.93027 -11.84502 -11.76292 -11.73649 -11.58471 -11.30178 -11.21926 -11.05069 -10.88967 -10.86287 -10.43092 -9.93681 -9.71037 -9.32598 -9.15564 -9.05907 -8.50736 -8.39714 -6.04938 -4.07978 0.47574 0.98238 1.15032 2.83651 2.94441 3.32813 3.36529 3.39865 3.42989 3.96590 4.36877 4.43013 4.45784 4.46307 4.65793 4.70746 4.75925 4.77148 4.82221 5.01622 5.08909 5.14157 5.15279 5.20820 5.27158 5.29074 5.31476 5.47112 5.62102 5.74187 5.85707 5.91833 5.98785 6.12571 6.28249 6.29493 6.43523 6.46348 6.87543 6.91036 7.06697 7.57605 7.67858 7.93077 8.33659 8.98093 9.56592 11.06268 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.002318 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.453639 B =12078.643613 C =13160.584484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.127 3.873 4 C -0.211 4.211 5 C -0.078 4.078 6 C -0.150 4.150 7 C -0.044 4.044 8 C -0.086 4.086 9 C 0.118 3.882 10 N -1.126 6.126 11 S 2.602 3.398 12 O -0.964 6.964 13 O -0.962 6.962 14 C -0.609 4.609 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.057 3.943 20 N -0.896 5.896 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.146 4.146 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.414 0.586 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.262 0.738 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.570 -6.859 22.353 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.230 4.230 5 C -0.096 4.096 6 C -0.169 4.169 7 C -0.045 4.045 8 C -0.125 4.125 9 C -0.008 4.008 10 N -0.884 5.884 11 S 2.698 3.302 12 O -0.954 6.954 13 O -0.952 6.952 14 C -0.741 4.741 15 C -0.146 4.146 16 C -0.008 4.008 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.722 3.278 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.164 4.164 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.248 0.752 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.076 -7.707 21.995 27.227 hybrid contribution -0.210 0.900 -0.702 1.161 sum -14.286 -6.807 21.293 26.530 Atomic orbital electron populations 1.23060 0.78335 1.04013 1.01351 1.86086 1.21427 1.26940 1.88671 1.19010 0.92307 0.84194 0.96261 1.21251 1.00045 0.92479 1.09204 1.20944 0.94619 0.97018 0.97052 1.21018 0.93777 0.98125 1.03958 1.19514 0.95082 0.92330 0.97570 1.20777 0.90779 1.04193 0.96722 1.21295 0.79089 1.02838 0.97607 1.55718 1.15467 1.88595 1.28614 1.05265 0.73733 0.76749 0.74500 1.93578 1.32926 1.87588 1.81321 1.93570 1.80699 1.39035 1.81865 1.30539 1.11639 1.18150 1.13732 1.21502 0.98799 1.03135 0.91120 1.19057 0.97032 0.92197 0.92472 1.21221 1.26224 1.11595 0.97440 0.92409 1.25023 0.95282 0.95130 0.98956 1.69946 1.35859 1.14894 1.32781 0.86610 0.80120 0.77794 0.83227 1.20118 1.21262 1.20116 1.20356 0.91392 0.98385 1.06310 0.92707 0.92539 0.88198 0.85569 0.85648 0.85556 0.89755 0.89762 0.89829 0.91283 0.75191 0.85527 0.85280 0.91556 0.91556 0.96131 0.96131 0.92851 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.04 10.50 -19.44 -0.20 -3.24 16 3 C 0.13 1.25 6.69 -39.22 -0.26 0.98 16 4 C -0.21 -1.76 9.04 -39.43 -0.36 -2.12 16 5 C -0.08 -0.62 10.04 -39.60 -0.40 -1.02 16 6 C -0.15 -1.23 9.70 -39.56 -0.38 -1.61 16 7 C -0.04 -0.38 5.13 -104.65 -0.54 -0.92 16 8 C -0.09 -0.64 5.48 -27.88 -0.15 -0.79 16 9 C 0.12 1.10 6.11 -4.04 -0.02 1.07 16 10 N -1.13 -11.46 5.89 -10.61 -0.06 -11.53 16 11 S 2.60 37.59 5.46 -107.50 -0.59 37.01 16 12 O -0.96 -16.73 18.08 -57.54 -1.04 -17.77 16 13 O -0.96 -16.92 17.50 -57.54 -1.01 -17.93 16 14 C -0.61 -9.27 6.07 37.16 0.23 -9.04 16 15 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 16 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 17 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 21 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C -0.15 -1.41 9.64 -39.44 -0.38 -1.79 16 26 H 0.05 0.24 7.67 -51.93 -0.40 -0.16 16 27 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.13 0.79 6.30 -52.49 -0.33 0.46 16 30 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 31 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 34 H 0.08 0.87 7.69 -51.93 -0.40 0.47 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.41 3.33 8.62 -34.48 -0.30 3.03 16 37 H 0.13 1.72 8.14 -51.92 -0.42 1.30 16 38 H 0.13 1.75 8.14 -51.93 -0.42 1.32 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 383.44 15.07 5.78 5.78 Total: -1.00 -36.55 383.44 -10.23 -46.77 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.85 Total: -0.42 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: -1.97 Total: -29.40 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.67 Total: -37.44 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -2.25 Total: -38.94 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 37.59 SS G_CDS: -0.59 Total: 37.01 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.55 -10.23 -46.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109338787.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.208 kcal (2) G-P(sol) polarization free energy of solvation -36.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds