Wall clock time and date at job start Tue Mar 31 2020 14:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46906 * 270.02263 * 8 7 6 10 10 N 1.46510 * 109.46850 * 179.97438 * 9 8 7 11 11 S 1.65607 * 119.99714 * 164.99872 * 10 9 8 12 12 O 1.42100 * 104.27336 * 181.07100 * 11 10 9 13 13 O 1.42104 * 104.27665 * 308.92933 * 11 10 9 14 14 C 1.81400 * 104.44833 * 65.00129 * 11 10 9 15 15 C 1.52996 * 109.46990 * 179.97438 * 14 11 10 16 16 C 1.53005 * 109.47284 * 179.97438 * 15 14 11 17 17 C 1.50695 * 109.46830 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00850 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99557 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00271 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00078 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47474 * 59.99308 * 21 19 17 23 23 H 1.48500 * 109.47375 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46782 * 299.99609 * 21 19 17 25 25 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 26 26 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 27 27 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 28 28 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 30 30 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 31 31 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 32 32 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 33 33 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 34 34 H 1.08995 * 109.47455 * 299.99525 * 9 8 7 35 35 H 1.08993 * 109.47459 * 60.00249 * 9 8 7 36 36 H 0.96992 * 119.99710 * 345.00049 * 10 9 8 37 37 H 1.09003 * 109.46966 * 300.00036 * 14 11 10 38 38 H 1.08998 * 109.47096 * 59.99656 * 14 11 10 39 39 H 1.08998 * 109.47620 * 300.00496 * 15 14 11 40 40 H 1.09007 * 109.46965 * 60.00064 * 15 14 11 41 41 H 1.08994 * 109.46739 * 300.00296 * 16 15 14 42 42 H 1.08996 * 109.46589 * 60.00428 * 16 15 14 43 43 H 0.96992 * 120.00216 * 180.02562 * 20 19 17 44 44 H 1.08006 * 120.02917 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 6 6.0689 2.6257 -1.4438 10 7 7.5318 2.7052 -1.4449 11 16 8.3777 2.3792 -2.8308 12 8 9.7395 2.5281 -2.4533 13 8 7.8705 1.1244 -3.2640 14 6 7.8882 3.6947 -3.9798 15 6 8.6122 3.5022 -5.3138 16 6 8.1989 4.6114 -6.2833 17 6 8.9116 4.4213 -7.5973 18 1 9.5911 3.5921 -7.7283 19 6 8.6963 5.3061 -8.6327 20 7 7.8685 6.3156 -8.4735 21 14 9.5791 5.0701 -10.2618 22 1 9.2142 3.7502 -10.8361 23 1 9.1780 6.1467 -11.2027 24 1 11.0468 5.1256 -10.0420 25 6 3.4311 1.2849 -0.0001 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2128 2.3203 -0.0106 30 1 1.3339 4.5114 0.0011 31 1 3.7922 4.6381 0.0002 32 1 5.8760 3.5065 0.5126 33 1 5.9718 1.7291 0.5125 34 1 5.7537 1.7175 -1.9574 35 1 5.6579 3.4948 -1.9574 36 1 8.0048 2.9487 -0.6339 37 1 6.8110 3.6538 -4.1414 38 1 8.1557 4.6636 -3.5582 39 1 9.6894 3.5433 -5.1519 40 1 8.3451 2.5332 -5.7357 41 1 7.1219 4.5697 -6.4451 42 1 8.4658 5.5804 -5.8616 43 1 7.7167 6.9378 -9.2020 44 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109338787.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:15 Heat of formation + Delta-G solvation = -133.524324 kcal Electronic energy + Delta-G solvation = -24591.835125 eV Core-core repulsion = 20827.821551 eV Total energy + Delta-G solvation = -3764.013574 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.07830 -38.83007 -38.16971 -37.06325 -36.68070 -36.45425 -34.15442 -33.18867 -31.41431 -29.64472 -28.96080 -27.99685 -25.61412 -24.40936 -23.43311 -22.44265 -21.81034 -20.35037 -18.92065 -18.60146 -18.24464 -17.50191 -17.26631 -17.10211 -16.89634 -16.63575 -16.49279 -16.27461 -15.63281 -15.54259 -14.90233 -14.51139 -14.47959 -14.24953 -14.05556 -13.80718 -13.50563 -13.34422 -13.19938 -13.11719 -12.96408 -12.81364 -12.77085 -12.72146 -12.64362 -12.43584 -12.28196 -12.14016 -11.87159 -11.73272 -11.66786 -11.38077 -11.10192 -10.56671 -10.36375 -9.76806 -9.13403 -8.22330 -6.33256 -0.71912 0.35223 0.51652 1.40290 1.42856 1.50759 1.80874 2.39465 2.40172 2.76418 2.81570 3.11043 3.26296 3.71822 3.84483 3.90232 3.95119 4.03795 4.10994 4.23403 4.31642 4.38656 4.41204 4.44572 4.54563 4.59266 4.63945 4.67162 4.71939 4.74344 4.97829 5.01388 5.07575 5.11899 5.22029 5.37356 5.45847 5.52810 5.63897 5.68005 5.79960 5.86230 6.16460 6.20299 6.47679 6.82236 7.35875 8.88940 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.002318 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.453639 B =12078.643613 C =13160.584484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.109 3.891 4 C -0.217 4.217 5 C -0.084 4.084 6 C -0.157 4.157 7 C -0.049 4.049 8 C -0.080 4.080 9 C 0.110 3.890 10 N -1.107 6.107 11 S 2.632 3.368 12 O -0.992 6.992 13 O -0.993 6.993 14 C -0.609 4.609 15 C -0.107 4.107 16 C 0.031 3.969 17 C -0.553 4.553 18 H 0.060 0.940 19 C 0.002 3.998 20 N -0.930 5.930 21 Si 0.963 3.037 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.267 1.267 25 C -0.168 4.168 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.115 0.885 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.428 0.572 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.003 0.997 42 H 0.004 0.996 43 H 0.265 0.735 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.955 -6.395 23.053 28.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.064 3.936 4 C -0.235 4.235 5 C -0.102 4.102 6 C -0.175 4.175 7 C -0.050 4.050 8 C -0.118 4.118 9 C -0.016 4.016 10 N -0.869 5.869 11 S 2.728 3.272 12 O -0.982 6.982 13 O -0.983 6.983 14 C -0.740 4.740 15 C -0.147 4.147 16 C -0.007 4.007 17 C -0.591 4.591 18 H 0.078 0.922 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.787 3.213 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.192 1.192 25 C -0.186 4.186 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.133 0.867 29 H 0.162 0.838 30 H 0.165 0.835 31 H 0.163 0.837 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.265 0.735 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.021 0.979 42 H 0.022 0.978 43 H 0.074 0.926 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.453 -7.247 22.703 27.872 hybrid contribution -0.189 0.758 -0.853 1.157 sum -14.642 -6.489 21.850 27.091 Atomic orbital electron populations 1.23307 0.76572 1.05407 1.02190 1.86048 1.23414 1.27277 1.88818 1.19253 0.92649 0.84810 0.96935 1.21512 1.01030 0.92244 1.08742 1.21291 0.94951 0.97671 0.96262 1.21317 0.94088 0.98682 1.03396 1.19643 0.95676 0.92165 0.97527 1.20756 0.90005 1.05537 0.95545 1.21488 0.78043 1.02972 0.99110 1.55246 1.15922 1.88219 1.27562 1.04111 0.72868 0.75656 0.74612 1.93536 1.35012 1.87758 1.81876 1.93533 1.81139 1.40762 1.82861 1.30499 1.12219 1.19835 1.11473 1.21317 0.99484 1.01113 0.92747 1.18959 0.95643 0.93218 0.92908 1.21722 1.26603 1.11787 0.99028 0.92195 1.25937 0.96032 0.94782 1.02832 1.70060 1.37139 1.15709 1.34036 0.85537 0.79122 0.78056 0.78589 1.19291 1.20601 1.19221 1.20533 0.91813 0.98866 1.07434 0.91523 0.91961 0.86657 0.83845 0.83486 0.83693 0.87514 0.89447 0.91191 0.89758 0.73487 0.83811 0.83334 0.91503 0.91660 0.97889 0.97798 0.92623 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.56 10.50 -92.48 -0.97 -7.53 16 3 C 0.11 2.11 6.69 22.50 0.15 2.26 16 4 C -0.22 -3.37 9.04 22.37 0.20 -3.16 16 5 C -0.08 -1.17 10.04 22.26 0.22 -0.94 16 6 C -0.16 -2.23 9.70 22.28 0.22 -2.02 16 7 C -0.05 -0.79 5.13 -19.88 -0.10 -0.89 16 8 C -0.08 -1.03 5.48 29.85 0.16 -0.86 16 9 C 0.11 1.83 6.11 86.38 0.53 2.36 16 10 N -1.11 -20.29 5.89 -187.49 -1.10 -21.40 16 11 S 2.63 73.06 5.46 -56.49 -0.31 72.75 16 12 O -0.99 -33.36 18.08 -127.65 -2.31 -35.67 16 13 O -0.99 -34.40 17.50 -127.65 -2.23 -36.63 16 14 C -0.61 -17.85 6.07 71.98 0.44 -17.41 16 15 C -0.11 -4.36 5.16 30.59 0.16 -4.20 16 16 C 0.03 1.60 4.97 29.85 0.15 1.75 16 17 C -0.55 -31.59 9.11 25.60 0.23 -31.36 16 18 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 19 C 0.00 0.14 5.46 84.65 0.46 0.60 16 20 N -0.93 -55.78 13.29 21.45 0.28 -55.50 16 21 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 25 C -0.17 -3.25 9.64 22.36 0.22 -3.04 16 26 H 0.07 0.51 7.67 -2.39 -0.02 0.49 16 27 H 0.06 0.55 7.65 -2.39 -0.02 0.54 16 28 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.14 1.58 6.30 -2.91 -0.02 1.56 16 30 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 31 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 32 H 0.11 0.91 8.09 -2.39 -0.02 0.89 16 33 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 34 H 0.07 1.39 7.69 -2.39 -0.02 1.37 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.43 5.78 8.62 -96.75 -0.83 4.95 16 37 H 0.14 3.69 8.14 -2.39 -0.02 3.68 16 38 H 0.15 3.76 8.14 -2.39 -0.02 3.74 16 39 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 41 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 44 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -78.86 383.44 -0.31 -79.16 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.16 Total: 14.09 kcal Atomic # 6 Polarization: -59.75 SS G_CDS: 4.15 Total: -55.61 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -0.82 Total: -76.89 kcal Atomic # 8 Polarization: -74.32 SS G_CDS: -5.51 Total: -79.83 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 73.06 SS G_CDS: -0.31 Total: 72.75 kcal Total: -78.86 -0.31 -79.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109338787.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.360 kcal (2) G-P(sol) polarization free energy of solvation -78.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds