Wall clock time and date at job start Tue Mar 31 2020 14:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35967 * 117.00156 * 2 1 4 4 C 1.38552 * 120.08600 * 0.02562 * 3 2 1 5 5 C 1.38244 * 120.01801 * 179.97438 * 4 3 2 6 6 C 1.38278 * 120.17698 * 359.97438 * 5 4 3 7 7 C 1.38189 * 120.16653 * 0.02562 * 6 5 4 8 8 C 1.38732 * 119.98276 * 359.73549 * 7 6 5 9 9 N 1.40125 * 120.08663 * 180.27865 * 8 7 6 10 10 C 1.34776 * 120.00481 * 24.79171 * 9 8 7 11 11 O 1.21296 * 119.99645 * 5.56365 * 10 9 8 12 12 C 1.50697 * 120.00421 * 185.55853 * 10 9 8 13 13 C 1.50695 * 109.47404 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.93011 * 269.72797 * 13 12 10 15 15 C 1.38101 * 120.07029 * 179.72326 * 14 13 12 16 16 C 1.38879 * 119.93098 * 0.56987 * 15 14 13 17 17 O 1.35753 * 120.07444 * 179.68372 * 16 15 14 18 18 C 1.34825 * 117.00144 * 185.19238 * 17 16 15 19 19 H 1.07999 * 119.99920 * 354.97009 * 18 17 16 20 20 C 1.38652 * 119.99771 * 174.98321 * 18 17 16 21 21 N 1.31553 * 120.00062 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99910 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47126 * 89.99586 * 22 20 18 24 24 H 1.48502 * 109.47074 * 209.99877 * 22 20 18 25 25 H 1.48504 * 109.46885 * 329.99775 * 22 20 18 26 26 C 1.38880 * 119.85997 * 359.70649 * 16 15 14 27 27 C 1.38103 * 119.93267 * 359.97438 * 26 16 15 28 28 H 1.09003 * 109.46923 * 299.99706 * 1 2 3 29 29 H 1.08998 * 109.47825 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47498 * 59.99720 * 1 2 3 31 31 H 1.08003 * 119.98617 * 359.95089 * 4 3 2 32 32 H 1.07996 * 119.90839 * 179.97438 * 5 4 3 33 33 H 1.07997 * 119.91873 * 179.97438 * 6 5 4 34 34 H 1.08005 * 120.00940 * 179.97438 * 7 6 5 35 35 H 0.97003 * 120.00171 * 204.79554 * 9 8 7 36 36 H 1.08997 * 109.46934 * 300.00528 * 12 10 9 37 37 H 1.09004 * 109.47013 * 60.00045 * 12 10 9 38 38 H 1.08000 * 119.96770 * 359.97438 * 14 13 12 39 39 H 1.08002 * 120.03515 * 180.27199 * 15 14 13 40 40 H 0.96999 * 119.99864 * 180.02562 * 21 20 18 41 41 H 1.07997 * 120.04055 * 179.97438 * 26 16 15 42 42 H 1.08000 * 119.96917 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2934 2.3746 0.0005 5 6 1.9226 3.6056 0.0011 6 6 3.3033 3.6806 0.0016 7 6 4.0615 2.5252 0.0011 8 6 3.4372 1.2863 0.0056 9 7 4.2039 0.1134 0.0109 10 6 5.4591 0.1310 0.5013 11 8 5.8898 1.1343 1.0295 12 6 6.3275 -1.0959 0.3935 13 6 7.6720 -0.8159 1.0137 14 6 8.6985 -0.3102 0.2369 15 6 9.9301 -0.0471 0.8036 16 6 10.1409 -0.3019 2.1524 17 8 11.3523 -0.0504 2.7110 18 6 11.5223 -0.4200 3.9964 19 1 10.6904 -0.8184 4.5583 20 6 12.7650 -0.2884 4.5971 21 7 13.7784 0.1967 3.9126 22 14 13.0004 -0.7998 6.3782 23 1 13.4008 -2.2287 6.4342 24 1 14.0604 0.0359 6.9973 25 1 11.7270 -0.6132 7.1192 26 6 9.1099 -0.8151 2.9286 27 6 7.8785 -1.0698 2.3575 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 0.2148 2.3195 0.0002 32 1 1.3340 4.5111 0.0011 33 1 3.7904 4.6444 0.0016 34 1 5.1398 2.5867 0.0011 35 1 3.8312 -0.7113 -0.3384 36 1 5.8517 -1.9250 0.9173 37 1 6.4587 -1.3571 -0.6566 38 1 8.5355 -0.1171 -0.8131 39 1 10.7299 0.3518 0.1974 40 1 14.6478 0.2884 4.3327 41 1 9.2707 -1.0147 3.9777 42 1 7.0762 -1.4685 2.9606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110154766.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:02 Heat of formation + Delta-G solvation = -63.948367 kcal Electronic energy + Delta-G solvation = -26046.378133 eV Core-core repulsion = 22149.937647 eV Total energy + Delta-G solvation = -3896.440486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.83217 -40.85341 -40.22143 -38.43518 -37.97757 -35.75798 -34.40557 -33.02052 -31.78092 -31.15425 -30.65766 -28.30346 -27.90953 -26.96737 -24.05967 -23.63732 -23.17860 -22.33999 -21.16587 -19.84832 -19.44680 -18.84704 -18.21046 -18.00940 -16.94322 -16.55375 -16.51595 -16.42401 -16.11120 -15.89880 -15.68202 -15.51260 -15.22757 -15.01451 -14.68317 -14.50490 -14.36369 -14.10312 -13.78063 -13.58499 -13.10019 -12.97747 -12.79349 -12.59868 -12.44595 -12.31568 -12.28320 -12.15804 -12.11351 -11.99804 -11.53212 -11.18127 -10.84661 -10.69299 -9.76220 -9.57341 -8.91020 -8.76622 -8.47403 -6.15543 0.27005 0.42118 0.61792 0.66098 1.33839 1.43445 1.51778 1.66204 2.06858 2.17655 2.33398 2.83529 2.84840 3.17280 3.51774 3.77216 3.89814 4.02274 4.03379 4.05486 4.19466 4.32026 4.43454 4.45153 4.46522 4.49516 4.58137 4.62755 4.68908 4.79488 4.80312 4.83569 5.08633 5.14287 5.15079 5.30453 5.32067 5.50471 5.56510 5.61326 5.71780 5.77309 5.83304 6.02917 6.22403 6.40774 6.49817 6.97079 7.20502 7.78389 8.76034 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.022346 B = 0.002187 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.703735 B =12802.508829 C =12918.385021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.090 3.910 4 C -0.188 4.188 5 C -0.100 4.100 6 C -0.146 4.146 7 C -0.122 4.122 8 C 0.102 3.898 9 N -0.655 5.655 10 C 0.509 3.491 11 O -0.554 6.554 12 C -0.074 4.074 13 C -0.147 4.147 14 C -0.055 4.055 15 C -0.206 4.206 16 C 0.113 3.887 17 O -0.233 6.233 18 C -0.414 4.414 19 H 0.100 0.900 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.255 1.255 26 C -0.244 4.244 27 C -0.059 4.059 28 H 0.062 0.938 29 H 0.119 0.881 30 H 0.068 0.932 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.427 0.573 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.148 0.852 39 H 0.112 0.888 40 H 0.273 0.727 41 H 0.117 0.883 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.991 -1.826 -10.446 32.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C 0.043 3.957 4 C -0.207 4.207 5 C -0.119 4.119 6 C -0.165 4.165 7 C -0.142 4.142 8 C 0.007 3.993 9 N -0.301 5.301 10 C 0.299 3.701 11 O -0.431 6.431 12 C -0.113 4.113 13 C -0.148 4.148 14 C -0.073 4.073 15 C -0.225 4.225 16 C 0.063 3.937 17 O -0.140 6.140 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.559 5.559 22 Si 0.839 3.161 23 H -0.185 1.185 24 H -0.195 1.195 25 H -0.179 1.179 26 C -0.264 4.264 27 C -0.077 4.077 28 H 0.080 0.920 29 H 0.137 0.863 30 H 0.087 0.913 31 H 0.177 0.823 32 H 0.171 0.829 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.265 0.735 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.131 0.869 40 H 0.082 0.918 41 H 0.135 0.865 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -30.146 -1.225 -10.150 31.833 hybrid contribution 0.506 -0.080 0.746 0.905 sum -29.641 -1.305 -9.404 31.124 Atomic orbital electron populations 1.23345 0.76103 1.05650 1.02299 1.85971 1.23632 1.25872 1.89106 1.18753 0.89889 0.86110 1.00951 1.21408 1.01220 0.91225 1.06871 1.21271 0.94091 0.98293 0.98217 1.21239 0.94668 0.98165 1.02406 1.21316 1.01240 0.91227 1.00435 1.17345 0.87853 0.87536 1.06532 1.43352 1.13784 1.11529 1.61475 1.21454 0.81571 0.90786 0.76296 1.90720 1.73472 1.35905 1.42996 1.20521 0.90279 0.95139 1.05339 1.19191 0.95477 1.06397 0.93718 1.20875 0.90764 0.95551 1.00137 1.20439 0.99854 1.10165 0.92079 1.19951 0.86200 0.93947 0.93619 1.83937 1.29080 1.72556 1.28413 1.21815 0.97883 1.44021 0.85303 0.88288 1.26618 0.93523 0.96537 1.05491 1.70188 1.01925 1.44393 1.39419 0.84574 0.79026 0.78680 0.73816 1.18516 1.19491 1.17886 1.21217 0.94894 1.09682 1.00558 1.20930 0.95119 0.96808 0.94842 0.91985 0.86269 0.91335 0.82305 0.82893 0.84643 0.85501 0.73476 0.85068 0.84617 0.83446 0.86944 0.91824 0.86541 0.84501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.10 9.91 -93.17 -0.92 -6.02 16 3 C 0.09 1.72 6.70 22.60 0.15 1.87 16 4 C -0.19 -2.86 9.04 22.35 0.20 -2.66 16 5 C -0.10 -1.60 10.04 22.28 0.22 -1.38 16 6 C -0.15 -3.08 10.04 22.27 0.22 -2.85 16 7 C -0.12 -3.22 8.72 22.38 0.20 -3.02 16 8 C 0.10 2.43 6.45 38.19 0.25 2.67 16 9 N -0.66 -13.57 5.29 -303.13 -1.60 -15.18 16 10 C 0.51 13.15 7.63 87.66 0.67 13.82 16 11 O -0.55 -20.08 13.21 -3.08 -0.04 -20.12 16 12 C -0.07 -1.51 5.83 29.10 0.17 -1.34 16 13 C -0.15 -4.72 4.38 -19.84 -0.09 -4.81 16 14 C -0.06 -1.96 9.69 22.25 0.22 -1.74 16 15 C -0.21 -9.35 9.99 22.39 0.22 -9.12 16 16 C 0.11 5.98 6.65 22.58 0.15 6.13 16 17 O -0.23 -14.71 9.76 -22.72 -0.22 -14.93 16 18 C -0.41 -25.15 9.49 67.92 0.64 -24.50 16 19 H 0.10 5.56 5.20 -2.91 -0.02 5.54 16 20 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 21 N -0.92 -58.16 13.67 21.61 0.30 -57.87 16 22 Si 1.02 44.31 29.55 68.60 2.03 46.34 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 25 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 26 C -0.24 -11.38 9.17 22.39 0.21 -11.17 16 27 C -0.06 -2.17 9.69 22.25 0.22 -1.95 16 28 H 0.06 0.36 7.66 -2.39 -0.02 0.34 16 29 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.31 7.66 -2.39 -0.02 0.29 16 31 H 0.16 1.37 6.30 -2.91 -0.02 1.35 16 32 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 33 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 34 H 0.13 4.02 5.79 -2.91 -0.02 4.00 16 35 H 0.43 5.98 8.34 -92.71 -0.77 5.21 16 36 H 0.13 1.88 8.08 -2.39 -0.02 1.86 16 37 H 0.14 1.85 8.08 -2.38 -0.02 1.83 16 38 H 0.15 4.05 8.06 -2.91 -0.02 4.02 16 39 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 40 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 41 H 0.12 5.51 5.64 -2.91 -0.02 5.50 16 42 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -84.57 361.01 5.06 -79.51 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.30 Total: 28.05 kcal Atomic # 6 Polarization: -45.01 SS G_CDS: 5.23 Total: -39.78 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: -1.31 Total: -73.04 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -1.19 Total: -41.07 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -84.57 5.06 -79.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110154766.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.565 kcal (2) G-P(sol) polarization free energy of solvation -84.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds