Wall clock time and date at job start Tue Mar 31 2020 14:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35992 * 116.99956 * 2 1 4 4 C 1.38934 * 119.90554 * 359.97438 * 3 2 1 5 5 C 1.38088 * 120.33437 * 180.02562 * 4 3 2 6 6 C 1.38612 * 120.15405 * 0.02562 * 5 4 3 7 7 O 1.35780 * 120.09324 * 179.97438 * 6 5 4 8 8 C 1.40118 * 119.81230 * 359.96683 * 6 5 4 9 9 C 1.47385 * 120.16382 * 179.97438 * 8 6 5 10 10 N 1.29429 * 119.99907 * 359.97438 * 9 8 6 11 11 C 1.46508 * 120.00075 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47169 * 115.00350 * 11 10 9 13 13 C 1.38328 * 119.96224 * 270.02412 * 12 11 10 14 14 C 1.38279 * 120.13490 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06774 * 359.77134 * 14 13 12 16 16 C 1.38852 * 119.93464 * 0.50144 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.74702 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99807 * 12 11 10 27 27 C 1.38266 * 119.90889 * 180.23223 * 3 2 1 28 28 H 1.08998 * 109.47183 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47657 * 299.99885 * 1 2 3 30 30 H 1.08997 * 109.47275 * 60.00190 * 1 2 3 31 31 H 1.07998 * 119.83207 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.92285 * 179.97438 * 5 4 3 33 33 H 0.96694 * 114.00116 * 269.97404 * 7 6 5 34 34 H 1.07997 * 120.00224 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.46757 * 355.00050 * 11 10 9 36 36 H 1.08998 * 109.46890 * 235.00704 * 11 10 9 37 37 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 38 38 H 1.07999 * 119.96467 * 180.02562 * 14 13 12 39 39 H 1.08006 * 120.03757 * 180.27571 * 15 14 13 40 40 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 41 41 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 42 42 H 1.07994 * 120.08090 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2877 2.3756 -0.0005 5 6 1.9054 3.6107 -0.0011 6 6 3.2888 3.6973 -0.0016 7 8 3.8949 4.9124 -0.0027 8 6 4.0600 2.5275 -0.0009 9 6 5.5315 2.6106 -0.0021 10 7 6.1144 3.7662 -0.0042 11 6 7.5772 3.8488 -0.0059 12 6 8.0435 4.4750 -1.2949 13 6 8.3174 3.6771 -2.3911 14 6 8.7450 4.2480 -3.5758 15 6 8.8952 5.6178 -3.6692 16 6 8.6264 6.4210 -2.5689 17 8 8.7781 7.7672 -2.6561 18 6 9.3071 8.2509 -3.7981 19 1 9.5131 7.5844 -4.6225 20 6 9.5865 9.6040 -3.9139 21 7 9.3360 10.4158 -2.9095 22 14 10.3200 10.2741 -5.4958 23 1 10.5054 9.1639 -6.4646 24 1 9.4035 11.2885 -6.0757 25 1 11.6338 10.9025 -5.2051 26 6 8.1962 5.8446 -1.3805 27 6 3.4272 1.2819 -0.0049 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.2095 2.3142 -0.0005 32 1 1.3092 4.5113 -0.0019 33 1 4.0705 5.2635 -0.8863 34 1 6.1234 1.7072 -0.0019 35 1 7.9977 2.8472 0.0845 36 1 7.9076 4.4588 0.8348 37 1 8.1972 2.6061 -2.3216 38 1 8.9577 3.6225 -4.4301 39 1 9.2249 6.0636 -4.5961 40 1 9.5318 11.3624 -2.9905 41 1 7.9825 6.4670 -0.5242 42 1 4.0152 0.3761 -0.0091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113006195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:12 Heat of formation + Delta-G solvation = -25.427570 kcal Electronic energy + Delta-G solvation = -25761.257106 eV Core-core repulsion = 21866.487007 eV Total energy + Delta-G solvation = -3894.770099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.45584 -39.11512 -38.64490 -37.02552 -35.86068 -35.47733 -32.34374 -32.02951 -30.67751 -29.45745 -28.90725 -27.34984 -26.27132 -25.18965 -23.12687 -22.71512 -21.66921 -20.80297 -20.13362 -18.10351 -17.88444 -17.68491 -17.01045 -16.68727 -16.04761 -15.38281 -15.33846 -15.11826 -14.85066 -14.50385 -14.41263 -14.07077 -13.90621 -13.77719 -13.53496 -13.07221 -12.88336 -12.70737 -12.53026 -12.47919 -11.94883 -11.70467 -11.58750 -11.41127 -11.30309 -10.94756 -10.88211 -10.69536 -10.48120 -10.42428 -10.33557 -9.35046 -9.19153 -8.85057 -8.83784 -8.15858 -8.07129 -7.25173 -6.44492 -4.03683 0.63479 1.16566 2.05470 2.34018 2.48702 2.94163 3.12206 3.13661 3.19228 3.56289 3.96442 4.15249 4.31813 4.50608 4.56958 4.73285 4.78065 4.80322 4.84325 5.05630 5.11342 5.14842 5.18423 5.22646 5.39412 5.59767 5.63563 5.67861 5.78581 5.84250 5.91540 5.97745 6.04247 6.16817 6.29506 6.35082 6.42715 6.63601 6.90183 7.06283 7.06625 7.26896 7.33857 7.42981 7.77885 7.85302 7.90384 8.00247 9.01014 9.71356 10.73519 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020302 B = 0.002219 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.810025 B =12614.767740 C =13100.537543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.107 3.893 4 C -0.180 4.180 5 C -0.117 4.117 6 C 0.119 3.881 7 O -0.470 6.470 8 C -0.053 4.053 9 C 0.156 3.844 10 N -0.458 5.458 11 C 0.077 3.923 12 C -0.044 4.044 13 C -0.206 4.206 14 C -0.075 4.075 15 C -0.231 4.231 16 C 0.152 3.848 17 O -0.177 6.177 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.166 4.166 27 C -0.113 4.113 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.393 0.607 34 H 0.100 0.900 35 H 0.048 0.952 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.269 0.731 41 H 0.119 0.881 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.814 -19.105 4.658 24.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.062 3.938 4 C -0.200 4.200 5 C -0.136 4.136 6 C 0.071 3.929 7 O -0.280 6.280 8 C -0.054 4.054 9 C -0.054 4.054 10 N -0.165 5.165 11 C -0.051 4.051 12 C -0.045 4.045 13 C -0.225 4.225 14 C -0.093 4.093 15 C -0.251 4.251 16 C 0.099 3.901 17 O -0.081 6.081 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.186 4.186 27 C -0.134 4.134 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.251 0.749 34 H 0.117 0.883 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.137 0.863 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.777 -17.899 5.480 23.849 hybrid contribution 0.620 -0.262 -1.389 1.543 sum -14.157 -18.161 4.091 23.387 Atomic orbital electron populations 1.23046 0.78446 1.03912 1.01363 1.86082 1.21294 1.26680 1.89162 1.18744 0.92014 0.84231 0.98822 1.21186 1.00080 0.91817 1.06889 1.21262 0.94052 0.97804 1.00465 1.18536 0.89562 0.85479 0.99295 1.84805 1.79888 1.29955 1.33397 1.19023 0.92165 0.92205 1.02052 1.23917 0.92371 0.93814 0.95336 1.72093 1.10867 1.26708 1.06860 1.21355 0.86863 0.99895 0.96986 1.18972 0.99074 0.92864 0.93561 1.20398 1.10078 0.98015 0.94019 1.20680 0.97722 0.94305 0.96609 1.21193 1.10245 0.93728 0.99903 1.19334 0.92887 0.84970 0.92947 1.83986 1.70280 1.14793 1.38998 1.21365 1.41522 0.92829 0.91085 0.89066 1.25291 0.97095 0.95042 0.99132 1.70048 1.44548 1.04489 1.30548 0.85652 0.78657 0.79163 0.79966 1.19134 1.20145 1.20142 1.20036 1.08202 0.93472 0.96914 1.20304 0.91418 0.97309 1.04343 0.88277 0.92657 0.92638 0.85172 0.84873 0.74937 0.88303 0.93335 0.88560 0.88124 0.87482 0.85572 0.92067 0.86309 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.90 10.49 -19.72 -0.21 -3.11 16 3 C 0.11 1.06 6.68 -39.31 -0.26 0.80 16 4 C -0.18 -1.64 9.03 -39.38 -0.36 -2.00 16 5 C -0.12 -1.22 9.97 -39.50 -0.39 -1.61 16 6 C 0.12 1.49 6.71 -38.74 -0.26 1.23 16 7 O -0.47 -6.61 11.37 -19.05 -0.22 -6.83 16 8 C -0.05 -0.64 5.88 -104.92 -0.62 -1.25 16 9 C 0.16 1.96 10.44 -14.84 -0.16 1.80 16 10 N -0.46 -6.90 8.33 -60.26 -0.50 -7.40 16 11 C 0.08 1.17 6.51 -5.19 -0.03 1.13 16 12 C -0.04 -0.81 5.46 -104.65 -0.57 -1.38 16 13 C -0.21 -3.63 9.70 -39.53 -0.38 -4.01 16 14 C -0.07 -1.40 10.04 -39.61 -0.40 -1.79 16 15 C -0.23 -5.08 9.17 -39.40 -0.36 -5.44 16 16 C 0.15 3.72 6.65 -39.11 -0.26 3.46 16 17 O -0.18 -5.09 9.76 0.05 0.00 -5.09 16 18 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16 19 H 0.09 2.38 5.21 -52.49 -0.27 2.10 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.40 13.67 55.48 0.76 -24.65 16 22 Si 0.94 20.60 29.55 -169.99 -5.02 15.58 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 C -0.17 -3.60 9.65 -39.39 -0.38 -3.98 16 27 C -0.11 -1.16 9.72 -39.02 -0.38 -1.54 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.24 7.65 -51.93 -0.40 -0.16 16 30 H 0.05 0.25 7.65 -51.93 -0.40 -0.15 16 31 H 0.13 0.85 6.27 -52.49 -0.33 0.52 16 32 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 33 H 0.39 4.82 9.06 45.56 0.41 5.23 16 34 H 0.10 0.99 7.76 -52.49 -0.41 0.58 16 35 H 0.05 0.63 7.63 -51.93 -0.40 0.23 16 36 H 0.10 1.43 8.08 -51.93 -0.42 1.01 16 37 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.13 2.77 5.64 -52.48 -0.30 2.48 16 40 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 42 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 366.59 15.07 5.52 5.52 Total: -1.00 -33.26 366.59 -7.46 -40.72 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -4.18 Total: 8.43 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -3.62 Total: -23.18 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.26 Total: -32.05 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.42 Total: -15.03 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.26 -7.46 -40.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113006195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.294 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds