Wall clock time and date at job start Tue Mar 31 2020 14:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00409 * 2 1 4 4 C 1.52991 * 109.47292 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47285 * 65.00329 * 4 3 2 6 6 C 1.42900 * 114.00421 * 179.97438 * 5 4 3 7 7 C 1.52993 * 109.47381 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47251 * 179.97438 * 7 6 5 9 9 O 1.21296 * 119.99814 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00087 * 179.97438 * 8 7 6 11 11 C 1.40093 * 120.00112 * 185.61151 * 10 8 7 12 12 C 1.38712 * 120.07411 * 34.07260 * 11 10 8 13 13 C 1.38188 * 120.02011 * 179.97438 * 12 11 10 14 14 C 1.38549 * 120.17548 * 0.02562 * 13 12 11 15 15 F 1.35096 * 119.92178 * 179.97438 * 14 13 12 16 16 C 1.38343 * 120.15584 * 0.02562 * 14 13 12 17 17 C 1.38735 * 119.97575 * 359.97438 * 16 14 13 18 18 O 1.35777 * 120.08743 * 180.29716 * 17 16 14 19 19 C 1.34800 * 117.00080 * 354.19171 * 18 17 16 20 20 H 1.08007 * 119.99887 * 354.52311 * 19 18 17 21 21 C 1.38630 * 120.00177 * 174.51703 * 19 18 17 22 22 N 1.31568 * 120.00297 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00299 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46674 * 60.00055 * 23 21 19 25 25 H 1.48505 * 109.47610 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47261 * 300.00571 * 23 21 19 27 27 H 1.09004 * 109.47127 * 59.99626 * 1 2 3 28 28 H 1.09003 * 109.47491 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46897 * 300.00284 * 1 2 3 30 30 H 1.09000 * 109.46878 * 59.99755 * 3 2 1 31 31 H 1.09000 * 109.47086 * 299.99991 * 3 2 1 32 32 H 1.09001 * 109.47814 * 305.00305 * 4 3 2 33 33 H 1.09000 * 109.47560 * 184.99944 * 4 3 2 34 34 H 1.09007 * 109.47060 * 59.99604 * 6 5 4 35 35 H 1.09006 * 109.46904 * 300.00062 * 6 5 4 36 36 H 1.09007 * 109.47069 * 59.99950 * 7 6 5 37 37 H 1.08997 * 109.47541 * 300.00298 * 7 6 5 38 38 H 0.97001 * 120.00245 * 5.61242 * 10 8 7 39 39 H 1.07997 * 119.98691 * 359.97298 * 12 11 10 40 40 H 1.07996 * 119.90792 * 180.02562 * 13 12 11 41 41 H 1.08001 * 120.01082 * 180.02562 * 16 14 13 42 42 H 0.97003 * 120.00251 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3822 0.4196 -1.3221 7 6 5.7266 -0.2351 -2.6613 8 6 7.2204 -0.4028 -2.7691 9 8 7.9388 -0.0353 -1.8635 10 7 7.7580 -0.9622 -3.8712 11 6 9.1329 -1.2258 -3.9233 12 6 9.8130 -1.5999 -2.7738 13 6 11.1691 -1.8603 -2.8266 14 6 11.8535 -1.7483 -4.0260 15 9 13.1794 -2.0035 -4.0717 16 6 11.1826 -1.3747 -5.1768 17 6 9.8212 -1.1118 -5.1310 18 8 9.1593 -0.7509 -6.2602 19 6 9.9020 -0.5489 -7.3669 20 1 10.9797 -0.5887 -7.3086 21 6 9.2825 -0.2902 -8.5798 22 7 7.9696 -0.2414 -8.6508 23 14 10.3117 -0.0110 -10.1135 24 1 11.1369 -1.2162 -10.3819 25 1 9.4166 0.2444 -11.2707 26 1 11.1999 1.1611 -9.9071 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.8508 0.5684 0.8426 33 1 3.9785 2.1764 0.0902 34 1 5.7363 -0.2122 -0.5074 35 1 5.8632 1.3958 -1.2601 36 1 5.3726 0.3964 -3.4762 37 1 5.2457 -1.2113 -2.7229 38 1 7.1929 -1.1822 -4.6283 39 1 9.2825 -1.6877 -1.8372 40 1 11.6968 -2.1518 -1.9306 41 1 11.7183 -1.2886 -6.1106 42 1 7.5362 -0.0600 -9.4994 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120311532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:48 Heat of formation + Delta-G solvation = -195.633654 kcal Electronic energy + Delta-G solvation = -26801.818756 eV Core-core repulsion = 22468.898742 eV Total energy + Delta-G solvation = -4332.920013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.136 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.84771 -41.67584 -40.32418 -39.36771 -38.24912 -37.93573 -35.59597 -34.32221 -33.20809 -31.18634 -30.81357 -29.67691 -27.41561 -27.12097 -25.21969 -23.89847 -23.49341 -23.00279 -21.28041 -20.16309 -19.52147 -18.59030 -18.23420 -17.84111 -17.49364 -17.19572 -16.99986 -16.68641 -16.54234 -16.36401 -16.10084 -16.00631 -15.75609 -15.43813 -15.39349 -15.14098 -14.64589 -14.55954 -14.11146 -13.95182 -13.73109 -13.42570 -13.19749 -13.03322 -12.64726 -12.58063 -12.44931 -12.34310 -12.17201 -12.14515 -11.94791 -11.69701 -11.24779 -10.92685 -10.81591 -10.63985 -10.57801 -9.58754 -8.79394 -8.51893 -6.18077 0.14412 0.44347 1.36900 1.45140 1.50745 1.53518 1.91557 2.13941 2.64256 2.80613 2.89093 3.04371 3.15322 3.43445 3.67536 3.91438 3.99574 4.04694 4.14923 4.18634 4.25708 4.33596 4.46942 4.47842 4.53032 4.59548 4.60333 4.67233 4.73140 4.82680 4.86497 4.88892 4.90650 5.00723 5.20865 5.27759 5.32798 5.51916 5.91766 6.00152 6.14372 6.29163 6.44242 6.92431 7.08168 7.60562 8.68410 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011600 B = 0.002608 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.129816 B =10735.644072 C =12851.855303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.060 3.940 4 C 0.056 3.944 5 O -0.400 6.400 6 C 0.085 3.915 7 C -0.129 4.129 8 C 0.519 3.481 9 O -0.562 6.562 10 N -0.652 5.652 11 C 0.060 3.940 12 C -0.049 4.049 13 C -0.204 4.204 14 C 0.124 3.876 15 F -0.144 7.144 16 C -0.265 4.265 17 C 0.131 3.869 18 O -0.201 6.201 19 C -0.417 4.417 20 H 0.098 0.902 21 C -0.008 4.008 22 N -0.904 5.904 23 Si 1.010 2.990 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.262 1.262 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.419 0.581 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.136 0.864 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.943 1.154 14.454 17.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.016 4.016 4 C -0.020 4.020 5 O -0.320 6.320 6 C 0.008 3.992 7 C -0.168 4.168 8 C 0.308 3.692 9 O -0.441 6.441 10 N -0.296 5.296 11 C -0.035 4.035 12 C -0.069 4.069 13 C -0.223 4.223 14 C 0.104 3.896 15 F -0.123 7.123 16 C -0.286 4.286 17 C 0.078 3.922 18 O -0.106 6.106 19 C -0.493 4.493 20 H 0.116 0.884 21 C -0.208 4.208 22 N -0.540 5.540 23 Si 0.830 3.170 24 H -0.184 1.184 25 H -0.194 1.194 26 H -0.187 1.187 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.131 0.869 37 H 0.141 0.859 38 H 0.256 0.744 39 H 0.168 0.832 40 H 0.177 0.823 41 H 0.153 0.847 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.889 1.258 14.746 17.800 hybrid contribution 0.504 0.290 -1.226 1.357 sum -9.386 1.548 13.520 16.531 Atomic orbital electron populations 1.22905 0.79620 1.03648 1.00872 1.87919 1.21380 1.28686 1.95614 1.22711 0.91690 0.85035 1.02150 1.22751 0.94035 0.98492 0.86737 1.87846 1.21914 1.82661 1.39548 1.22002 0.81006 1.00003 0.96155 1.21394 0.89568 1.05655 1.00232 1.20977 0.91529 0.75542 0.81141 1.90662 1.63685 1.50007 1.39789 1.43287 1.06367 1.60659 1.19324 1.17140 0.84879 1.09396 0.92082 1.20705 0.93695 0.95702 0.96846 1.20864 0.94537 1.09848 0.97082 1.17459 0.77236 1.00437 0.94457 1.91430 1.31751 1.91796 1.97309 1.20953 0.94850 1.13302 0.99477 1.19205 0.90633 0.94517 0.87887 1.83904 1.35457 1.75610 1.15656 1.21684 0.91631 1.50980 0.84976 0.88441 1.26377 0.97510 0.95756 1.01145 1.70106 1.09684 1.46299 1.27931 0.84753 0.77370 0.79607 0.75243 1.18372 1.19406 1.18660 0.93564 0.89056 0.92544 0.89165 0.92315 0.92219 0.89842 0.92410 0.92739 0.86950 0.85918 0.74397 0.83158 0.82306 0.84657 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.58 16 2 O -0.42 -8.56 10.67 -144.35 -1.54 -10.10 16 3 C 0.06 0.95 6.32 71.98 0.45 1.41 16 4 C 0.06 1.00 6.32 71.98 0.45 1.46 16 5 O -0.40 -9.64 10.31 -144.35 -1.49 -11.13 16 6 C 0.09 2.04 5.23 71.98 0.38 2.42 16 7 C -0.13 -3.17 6.07 29.85 0.18 -2.99 16 8 C 0.52 16.71 7.56 87.66 0.66 17.37 16 9 O -0.56 -20.66 13.74 -3.08 -0.04 -20.70 16 10 N -0.65 -23.45 5.20 -303.03 -1.57 -25.02 16 11 C 0.06 2.44 6.28 38.23 0.24 2.68 16 12 C -0.05 -1.77 8.65 22.37 0.19 -1.58 16 13 C -0.20 -6.92 10.02 22.33 0.22 -6.70 16 14 C 0.12 4.74 7.29 22.37 0.16 4.90 16 15 F -0.14 -5.21 17.26 44.97 0.78 -4.43 16 16 C -0.27 -11.59 9.11 22.41 0.20 -11.38 16 17 C 0.13 6.13 6.66 22.69 0.15 6.28 16 18 O -0.20 -10.85 9.30 -22.74 -0.21 -11.06 16 19 C -0.42 -22.63 9.44 67.91 0.64 -21.99 16 20 H 0.10 4.97 5.30 -2.91 -0.02 4.96 16 21 C -0.01 -0.42 5.49 84.83 0.47 0.05 16 22 N -0.90 -50.71 13.67 21.61 0.30 -50.42 16 23 Si 1.01 40.64 29.55 68.60 2.03 42.67 16 24 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 25 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 26 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 27 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.38 8.10 -2.38 -0.02 1.36 16 35 H 0.05 1.33 8.10 -2.38 -0.02 1.31 16 36 H 0.11 2.65 8.14 -2.38 -0.02 2.63 16 37 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.42 14.67 8.55 -92.71 -0.79 13.88 16 39 H 0.15 5.00 6.48 -2.91 -0.02 4.99 16 40 H 0.16 4.30 8.06 -2.91 -0.02 4.27 16 41 H 0.14 6.02 5.71 -2.91 -0.02 6.00 16 42 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -67.72 368.37 4.17 -63.54 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 0.27 Total: 33.14 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 5.66 Total: -6.49 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -1.28 Total: -75.44 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -3.28 Total: -52.99 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.78 Total: -4.43 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -67.72 4.17 -63.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120311532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.091 kcal (2) G-P(sol) polarization free energy of solvation -67.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds