Wall clock time and date at job start Tue Mar 31 2020 14:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35868 * 117.00103 * 2 1 4 4 C 1.38833 * 119.93060 * 180.02562 * 3 2 1 5 5 C 1.37915 * 120.06165 * 180.02562 * 4 3 2 6 6 C 1.39374 * 119.93423 * 359.97438 * 5 4 3 7 7 C 1.48379 * 120.06039 * 180.02562 * 6 5 4 8 8 C 1.39462 * 120.47165 * 0.02562 * 7 6 5 9 9 N 1.31791 * 120.92207 * 179.97438 * 8 7 6 10 10 C 1.31720 * 122.01995 * 359.74600 * 9 8 7 11 11 C 1.39625 * 120.82765 * 0.54442 * 10 9 8 12 12 C 1.47746 * 120.50573 * 179.71915 * 11 10 9 13 13 O 1.21462 * 120.00102 * 179.72430 * 12 11 10 14 14 O 1.34705 * 119.99597 * 359.72262 * 12 11 10 15 15 C 1.45198 * 117.00016 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47375 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.47083 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00330 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99882 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00303 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00146 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46887 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.47330 * 120.00503 * 21 19 17 24 24 H 1.48502 * 109.47411 * 240.00667 * 21 19 17 25 25 C 1.39478 * 120.46622 * 179.97438 * 7 6 5 26 26 C 1.39370 * 119.86984 * 0.27312 * 6 5 4 27 27 C 1.37908 * 119.93360 * 359.45129 * 26 6 5 28 28 H 1.08997 * 109.46846 * 60.00512 * 1 2 3 29 29 H 1.08991 * 109.47318 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47182 * 300.00522 * 1 2 3 31 31 H 1.07991 * 119.97383 * 359.97438 * 4 3 2 32 32 H 1.08000 * 120.03105 * 179.97438 * 5 4 3 33 33 H 1.07993 * 119.53855 * 359.97438 * 8 7 6 34 34 H 1.07999 * 119.57967 * 180.27078 * 10 9 8 35 35 H 1.08998 * 109.47176 * 300.00225 * 15 14 12 36 36 H 1.08997 * 109.47371 * 60.00225 * 15 14 12 37 37 H 1.09006 * 109.46544 * 299.99685 * 16 15 14 38 38 H 1.08994 * 109.47422 * 59.99968 * 16 15 14 39 39 H 0.96996 * 120.00279 * 179.97438 * 20 19 17 40 40 H 1.08007 * 120.91481 * 0.02562 * 25 7 6 41 41 H 1.08002 * 120.02905 * 179.72754 * 26 6 5 42 42 H 1.08006 * 119.96736 * 180.27840 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 3.4324 1.2815 -0.0005 5 6 4.0614 2.5089 0.0000 6 6 3.3036 3.6787 0.0005 7 6 3.9774 5.0007 0.0005 8 6 5.3695 5.0850 -0.0005 9 7 5.9771 6.2545 -0.0011 10 6 5.3081 7.3891 -0.0055 11 6 3.9119 7.3966 0.0014 12 6 3.1687 8.6735 0.0026 13 8 1.9541 8.6693 0.0036 14 8 3.8382 9.8424 0.0025 15 6 3.0433 11.0574 0.0031 16 6 3.9711 12.2740 0.0023 17 6 3.1459 13.5350 0.0036 18 1 2.0676 13.4748 0.0044 19 6 3.7676 14.7657 0.0037 20 7 5.0808 14.8391 0.0022 21 14 2.7449 16.3288 0.0045 22 1 1.3023 15.9764 0.0056 23 1 3.0602 17.1260 1.2169 24 1 3.0591 17.1266 -1.2080 25 6 3.2274 6.1767 0.0005 26 6 1.9119 3.6042 0.0063 27 6 1.2886 2.3741 0.0000 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0190 0.3749 -0.0005 32 1 5.1400 2.5635 0.0000 33 1 5.9577 4.1793 -0.0010 34 1 5.8464 8.3254 -0.0102 35 1 2.4140 11.0803 -0.8866 36 1 2.4148 11.0800 0.8933 37 1 4.6006 12.2513 0.8919 38 1 4.5993 12.2513 -0.8881 39 1 5.5181 15.7048 0.0019 40 1 2.1478 6.1463 0.0009 41 1 1.3223 4.5090 0.0112 42 1 0.2101 2.3157 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177264661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:37 Heat of formation + Delta-G solvation = -88.146120 kcal Electronic energy + Delta-G solvation = -25285.749200 eV Core-core repulsion = 21388.259421 eV Total energy + Delta-G solvation = -3897.489779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.00760 -41.19966 -40.57577 -38.44038 -37.78064 -35.46599 -34.21647 -33.55878 -32.28977 -32.07123 -29.97143 -28.10766 -27.44538 -25.94271 -25.14857 -23.56925 -22.84677 -22.74517 -21.70770 -19.53178 -19.16482 -18.47112 -18.20144 -17.78579 -17.61430 -17.29998 -16.70082 -16.66807 -16.50629 -16.36989 -15.46141 -15.42758 -14.91940 -14.81583 -14.62277 -14.40556 -14.36814 -14.06810 -13.72163 -13.62120 -13.18948 -13.15739 -12.99545 -12.73984 -12.64265 -12.60836 -12.28688 -12.05802 -11.77011 -11.61573 -11.52905 -11.41001 -11.15380 -10.66495 -10.62387 -10.57339 -10.04594 -8.84412 -8.27183 -6.40227 -0.73654 -0.36667 0.34136 0.69589 1.38293 1.40406 1.41715 1.51818 1.58595 2.34153 2.39506 2.51375 2.93381 3.07446 3.17706 3.36480 3.59731 3.62002 3.66399 3.78550 3.87983 4.08430 4.19633 4.20995 4.25611 4.30519 4.38689 4.40490 4.50838 4.62139 4.67790 4.74928 4.82329 4.87060 5.02210 5.15609 5.21575 5.29290 5.42507 5.45681 5.46489 5.52622 5.69138 5.72657 6.05830 6.38191 6.53727 6.71165 6.73770 7.29521 8.85466 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.027659 B = 0.001864 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.095124 B =15018.146102 C =16004.490943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.123 3.877 4 C -0.156 4.156 5 C -0.061 4.061 6 C -0.095 4.095 7 C -0.090 4.090 8 C 0.141 3.859 9 N -0.495 5.495 10 C 0.152 3.848 11 C -0.179 4.179 12 C 0.509 3.491 13 O -0.534 6.534 14 O -0.355 6.355 15 C 0.091 3.909 16 C 0.029 3.971 17 C -0.550 4.550 18 H 0.065 0.935 19 C 0.006 3.994 20 N -0.925 5.925 21 Si 0.973 3.027 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.016 4.016 26 C -0.076 4.076 27 C -0.209 4.209 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.064 0.936 31 H 0.151 0.849 32 H 0.162 0.838 33 H 0.202 0.798 34 H 0.174 0.826 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.268 0.732 40 H 0.154 0.846 41 H 0.133 0.867 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.113 -32.447 -0.018 32.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.077 3.923 4 C -0.175 4.175 5 C -0.078 4.078 6 C -0.096 4.096 7 C -0.092 4.092 8 C -0.016 4.016 9 N -0.202 5.202 10 C -0.005 4.005 11 C -0.182 4.182 12 C 0.354 3.646 13 O -0.425 6.425 14 O -0.271 6.271 15 C 0.018 3.982 16 C -0.008 4.008 17 C -0.588 4.588 18 H 0.084 0.916 19 C -0.193 4.193 20 N -0.564 5.564 21 Si 0.797 3.203 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.041 4.041 26 C -0.094 4.094 27 C -0.228 4.228 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.082 0.918 31 H 0.168 0.832 32 H 0.180 0.820 33 H 0.218 0.782 34 H 0.191 0.809 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.077 0.923 40 H 0.172 0.828 41 H 0.151 0.849 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.338 -32.442 -0.015 32.731 hybrid contribution -1.712 1.441 0.003 2.238 sum -6.051 -31.001 -0.012 31.586 Atomic orbital electron populations 1.23354 0.76492 1.05655 1.02259 1.86053 1.23407 1.26805 1.88253 1.19421 0.93021 0.84510 0.95323 1.20643 0.91391 0.99372 1.06050 1.21286 1.01243 0.89773 0.95547 1.18458 0.93266 0.90997 1.06916 1.19718 0.94591 0.92577 1.02340 1.23798 0.91316 0.96776 0.89728 1.67874 1.40447 0.98459 1.13459 1.23358 0.89787 0.97914 0.89417 1.20054 0.95568 0.90726 1.11873 1.21340 0.85937 0.85082 0.72204 1.90776 1.15694 1.88636 1.47434 1.86545 1.42339 1.15232 1.83017 1.23254 0.93881 0.79699 1.01323 1.19006 0.94859 0.89970 0.96948 1.21399 0.93689 0.91232 1.52446 0.91635 1.25952 0.96232 1.02976 0.94113 1.70097 1.09727 1.26236 1.50381 0.85277 0.78903 0.78139 0.77984 1.18632 1.20106 1.20098 1.21888 1.01733 0.89611 0.90846 1.21226 0.93804 0.98098 0.96253 1.21368 1.01271 0.91648 1.08512 0.91769 0.86275 0.91775 0.83169 0.82029 0.78188 0.80942 0.91865 0.91863 0.97279 0.97266 0.92348 0.82834 0.84927 0.83507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -4.64 10.49 -92.06 -0.97 -5.60 16 3 C 0.12 1.82 6.69 22.55 0.15 1.97 16 4 C -0.16 -2.01 9.97 22.34 0.22 -1.78 16 5 C -0.06 -0.73 9.43 22.47 0.21 -0.52 16 6 C -0.10 -1.52 5.88 -20.03 -0.12 -1.64 16 7 C -0.09 -1.70 5.89 -19.98 -0.12 -1.82 16 8 C 0.14 2.50 10.59 84.99 0.90 3.40 16 9 N -0.49 -11.69 10.33 -193.87 -2.00 -13.69 16 10 C 0.15 4.05 10.78 85.04 0.92 4.97 16 11 C -0.18 -5.09 5.88 -20.03 -0.12 -5.21 16 12 C 0.51 18.26 7.91 70.34 0.56 18.82 16 13 O -0.53 -21.07 16.20 19.96 0.32 -20.75 16 14 O -0.36 -14.28 9.49 -56.14 -0.53 -14.81 16 15 C 0.09 4.09 5.41 71.98 0.39 4.48 16 16 C 0.03 1.57 5.35 29.85 0.16 1.73 16 17 C -0.55 -31.06 9.11 25.60 0.23 -30.83 16 18 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 19 C 0.01 0.36 5.46 84.65 0.46 0.82 16 20 N -0.93 -55.22 13.29 21.45 0.28 -54.93 16 21 Si 0.97 43.56 29.54 68.60 2.03 45.58 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 24 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 25 C -0.02 -0.37 9.07 22.97 0.21 -0.16 16 26 C -0.08 -1.21 9.43 22.46 0.21 -1.00 16 27 C -0.21 -2.96 9.02 22.33 0.20 -2.76 16 28 H 0.06 0.36 7.65 -2.39 -0.02 0.34 16 29 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.06 0.36 7.65 -2.39 -0.02 0.34 16 31 H 0.15 1.40 8.06 -2.92 -0.02 1.38 16 32 H 0.16 0.95 6.22 -2.91 -0.02 0.93 16 33 H 0.20 1.87 6.20 -2.91 -0.02 1.85 16 34 H 0.17 4.62 7.61 -2.91 -0.02 4.60 16 35 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 38 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 40 H 0.15 3.38 5.99 -2.91 -0.02 3.36 16 41 H 0.13 1.97 6.26 -2.91 -0.02 1.95 16 42 H 0.15 1.48 6.28 -2.91 -0.02 1.47 16 Total: -1.00 -70.69 365.02 5.77 -64.92 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 1.06 Total: 7.60 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 5.58 Total: -8.31 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: -1.72 Total: -68.63 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.18 Total: -41.16 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -70.69 5.77 -64.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177264661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.230 kcal (2) G-P(sol) polarization free energy of solvation -70.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds