Wall clock time and date at job start Tue Mar 31 2020 15:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 N 1.41601 * 113.99610 * 2 1 4 4 C 1.46512 * 119.99734 * 275.04793 * 3 2 1 5 5 C 1.50696 * 109.47064 * 255.00535 * 4 3 2 6 6 C 1.38241 * 119.99660 * 269.72509 * 5 4 3 7 7 C 1.38240 * 119.99599 * 179.76837 * 6 5 4 8 8 C 1.38231 * 119.99982 * 0.48988 * 7 6 5 9 9 C 1.38233 * 120.00157 * 359.78449 * 8 7 6 10 10 C 1.38226 * 120.00363 * 90.00484 * 5 4 3 11 11 C 1.34772 * 120.00214 * 95.05410 * 3 2 1 12 12 O 1.21593 * 120.00199 * 185.86304 * 11 3 2 13 13 C 1.47536 * 120.00134 * 5.86796 * 11 3 2 14 14 C 1.39670 * 120.19610 * 25.54566 * 13 11 3 15 15 C 1.37822 * 119.91615 * 180.02562 * 14 13 11 16 16 C 1.38573 * 120.32561 * 359.97438 * 15 14 13 17 17 C 1.38024 * 120.40478 * 0.02562 * 16 15 14 18 18 C 1.38838 * 120.06623 * 359.97438 * 17 16 15 19 19 O 1.35521 * 120.15800 * 179.97438 * 18 17 16 20 20 C 1.34814 * 117.00123 * 354.78442 * 19 18 17 21 21 H 1.07997 * 119.99850 * 5.02090 * 20 19 18 22 22 C 1.38701 * 120.00248 * 185.02484 * 20 19 18 23 23 N 1.31519 * 119.99947 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99898 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47406 * 60.00123 * 24 22 20 26 26 H 1.48510 * 109.46829 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47440 * 299.99777 * 24 22 20 28 28 H 1.08994 * 109.46935 * 300.00393 * 1 2 3 29 29 H 1.09003 * 109.46776 * 60.00465 * 1 2 3 30 30 H 1.08995 * 109.46840 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47047 * 15.00824 * 4 3 2 32 32 H 1.09002 * 109.46503 * 135.00374 * 4 3 2 33 33 H 1.08005 * 120.00200 * 0.02562 * 6 5 4 34 34 H 1.07994 * 119.99706 * 180.25339 * 7 6 5 35 35 H 1.07996 * 119.99970 * 179.77077 * 8 7 6 36 36 H 1.08003 * 120.00095 * 179.97438 * 9 8 7 37 37 H 1.08005 * 120.00007 * 359.97438 * 10 5 4 38 38 H 1.07995 * 120.03548 * 0.02562 * 14 13 11 39 39 H 1.07999 * 119.83240 * 179.97438 * 15 14 13 40 40 H 1.08001 * 119.79633 * 179.73931 * 16 15 14 41 41 H 1.07993 * 119.96759 * 179.97438 * 17 16 15 42 42 H 0.96999 * 120.00129 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.2008 2.0082 -1.2639 5 6 3.6611 1.9815 -1.6350 6 6 4.5016 2.9921 -1.2067 7 6 5.8422 2.9651 -1.5430 8 6 6.3402 1.9330 -2.3160 9 6 5.4986 0.9255 -2.7490 10 6 4.1591 0.9497 -2.4083 11 6 2.3729 1.8675 1.1626 12 8 2.7678 3.0174 1.1748 13 6 2.2967 1.1003 2.4205 14 6 2.3724 -0.2941 2.3986 15 6 2.3001 -1.0050 3.5771 16 6 2.1531 -0.3431 4.7856 17 6 2.0768 1.0345 4.8228 18 6 2.1479 1.7671 3.6456 19 8 2.0727 3.1198 3.6798 20 6 1.8208 3.6887 4.8758 21 1 1.7696 3.0772 5.7645 22 6 1.6274 5.0592 4.9649 23 7 1.6901 5.8039 3.8827 24 14 1.2777 5.8473 6.6220 25 1 2.4114 5.5844 7.5443 26 1 1.1114 7.3128 6.4479 27 1 0.0328 5.2716 7.1911 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.6177 1.5257 -2.0483 32 1 1.8733 3.0418 -1.1514 33 1 4.1118 3.8005 -0.6058 34 1 6.4996 3.7524 -1.2050 35 1 7.3867 1.9138 -2.5819 36 1 5.8876 0.1193 -3.3534 37 1 3.5016 0.1624 -2.7464 38 1 2.4875 -0.8145 1.4594 39 1 2.3584 -2.0833 3.5586 40 1 2.0931 -0.9089 5.7036 41 1 1.9618 1.5431 5.7685 42 1 1.5545 6.7624 3.9449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180844572.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:14 Heat of formation + Delta-G solvation = 12.789260 kcal Electronic energy + Delta-G solvation = -27883.778349 eV Core-core repulsion = 23990.665456 eV Total energy + Delta-G solvation = -3893.112893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.86958 -39.01370 -38.11261 -36.78412 -36.28005 -33.45759 -32.34203 -31.07535 -30.69686 -29.99999 -28.87342 -26.79502 -25.83529 -25.25917 -22.79052 -22.39848 -21.64076 -20.97883 -19.75861 -18.02341 -17.91780 -16.87606 -16.40195 -16.18722 -15.66090 -14.91183 -14.83940 -14.77488 -14.52665 -14.29443 -14.11103 -13.90640 -13.57964 -13.32512 -13.22098 -12.97596 -12.68593 -12.57571 -12.39847 -12.16498 -11.76313 -11.69399 -11.28840 -11.14359 -11.00100 -10.86280 -10.83009 -10.79354 -10.50470 -10.16427 -9.59976 -9.10468 -8.87337 -8.73916 -8.59557 -8.50455 -8.19095 -7.28436 -6.45964 -4.05492 1.35580 1.60521 1.78506 2.35507 2.40848 3.11416 3.13227 3.15459 3.55365 3.93282 4.00363 4.46379 4.61576 4.96083 4.98546 5.09172 5.14525 5.22006 5.26760 5.31310 5.41398 5.44757 5.54665 5.62204 5.68590 5.76681 5.79311 5.81773 5.88023 6.10601 6.13916 6.26375 6.27660 6.59207 6.68416 6.71494 6.73248 6.80962 6.85132 6.98581 7.15361 7.18594 7.27138 7.32773 7.76100 7.87731 7.98559 8.83371 8.95703 9.66334 10.68729 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011702 B = 0.004313 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.133428 B = 6490.825076 C = 7726.306554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.144 6.144 3 N -0.483 5.483 4 C 0.161 3.839 5 C -0.106 4.106 6 C -0.084 4.084 7 C -0.126 4.126 8 C -0.118 4.118 9 C -0.133 4.133 10 C -0.100 4.100 11 C 0.577 3.423 12 O -0.485 6.485 13 C -0.228 4.228 14 C -0.021 4.021 15 C -0.236 4.236 16 C -0.049 4.049 17 C -0.243 4.243 18 C 0.191 3.809 19 O -0.136 6.136 20 C -0.401 4.401 21 H 0.093 0.907 22 C 0.045 3.955 23 N -0.840 5.840 24 Si 0.940 3.060 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.137 0.863 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.131 0.869 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.131 0.869 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.897 -10.461 -10.118 14.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 O -0.148 6.148 3 N -0.265 5.265 4 C 0.041 3.959 5 C -0.107 4.107 6 C -0.102 4.102 7 C -0.144 4.144 8 C -0.137 4.137 9 C -0.151 4.151 10 C -0.118 4.118 11 C 0.370 3.630 12 O -0.358 6.358 13 C -0.233 4.233 14 C -0.039 4.039 15 C -0.255 4.255 16 C -0.067 4.067 17 C -0.262 4.262 18 C 0.133 3.867 19 O -0.035 6.035 20 C -0.477 4.477 21 H 0.110 0.890 22 C -0.162 4.162 23 N -0.472 5.472 24 Si 0.764 3.236 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.194 1.194 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.155 0.845 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.148 0.852 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.148 0.852 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.209 -9.490 -10.335 14.083 hybrid contribution -0.488 0.153 0.948 1.078 sum 0.721 -9.337 -9.387 13.259 Atomic orbital electron populations 1.23298 0.82421 1.03170 1.01388 1.90538 1.19570 1.08164 1.96500 1.50239 1.60344 1.09861 1.06064 1.20466 0.92489 0.97805 0.85181 1.20125 0.96225 0.95651 0.98694 1.21442 0.93321 0.98661 0.96827 1.21196 0.95692 0.98848 0.98678 1.21140 0.99408 0.94821 0.98295 1.21042 0.93795 0.98950 1.01297 1.20998 0.95515 0.97382 0.97943 1.18403 0.76957 0.85626 0.82028 1.90893 1.45226 1.15704 1.83928 1.18689 1.21133 0.93148 0.90344 1.21195 0.92870 0.91736 0.98142 1.20540 1.13593 0.98677 0.92648 1.20918 0.94858 0.93794 0.97167 1.21100 1.12591 0.94174 0.98384 1.19277 0.90653 0.84927 0.91877 1.84097 1.73074 1.13001 1.33295 1.21409 1.50665 0.91559 0.84098 0.88953 1.25348 0.96287 0.95291 0.99305 1.70087 1.42929 1.06218 1.27946 0.85801 0.79288 0.78311 0.80152 1.19362 1.20178 1.19420 0.92590 0.93410 0.88190 0.89298 0.89036 0.84540 0.86128 0.86485 0.86430 0.86314 0.85157 0.87374 0.87315 0.85162 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.06 11.45 101.05 1.16 1.10 16 2 O -0.14 -2.17 7.95 -11.47 -0.09 -2.26 16 3 N -0.48 -8.50 3.00 -62.52 -0.19 -8.69 16 4 C 0.16 2.41 5.83 -5.19 -0.03 2.38 16 5 C -0.11 -1.61 5.25 -104.63 -0.55 -2.16 16 6 C -0.08 -1.39 8.94 -39.58 -0.35 -1.74 16 7 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 8 C -0.12 -1.49 10.05 -39.59 -0.40 -1.89 16 9 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 10 C -0.10 -1.31 9.70 -39.59 -0.38 -1.70 16 11 C 0.58 12.87 7.27 -12.47 -0.09 12.78 16 12 O -0.48 -12.54 13.43 -14.74 -0.20 -12.74 16 13 C -0.23 -5.13 5.75 -104.81 -0.60 -5.74 16 14 C -0.02 -0.39 8.76 -39.20 -0.34 -0.74 16 15 C -0.24 -4.09 10.02 -39.61 -0.40 -4.49 16 16 C -0.05 -0.89 10.03 -39.54 -0.40 -1.28 16 17 C -0.24 -5.31 9.16 -39.44 -0.36 -5.67 16 18 C 0.19 4.79 6.63 -38.60 -0.26 4.53 16 19 O -0.14 -3.96 8.15 -19.23 -0.16 -4.12 16 20 C -0.40 -11.29 9.49 30.90 0.29 -11.00 16 21 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 22 C 0.04 1.24 5.49 -17.51 -0.10 1.14 16 23 N -0.84 -24.93 13.67 55.48 0.76 -24.17 16 24 Si 0.94 20.43 29.55 -169.99 -5.02 15.40 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 26 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 32 H 0.09 1.46 7.76 -51.93 -0.40 1.06 16 33 H 0.14 2.55 6.88 -52.48 -0.36 2.19 16 34 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.13 2.22 5.84 -52.49 -0.31 1.91 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.13 2.79 5.63 -52.49 -0.30 2.50 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -33.57 361.47 -8.06 -41.63 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.00 Total: 8.22 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -3.61 Total: -18.71 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.57 Total: -32.86 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.45 Total: -19.13 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.57 -8.06 -41.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180844572.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.417 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds