Wall clock time and date at job start Tue Mar 31 2020 14:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35898 * 116.99467 * 2 1 4 4 C 1.38753 * 120.05992 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94471 * 179.97438 * 4 3 2 6 6 C 1.38295 * 120.05444 * 359.75457 * 5 4 3 7 7 C 1.38247 * 120.10913 * 0.50099 * 6 5 4 8 8 C 1.50700 * 119.96730 * 179.77250 * 7 6 5 9 9 N 1.46508 * 109.46981 * 269.71964 * 8 7 6 10 10 C 1.34775 * 119.99760 * 179.97438 * 9 8 7 11 11 O 1.21590 * 119.99975 * 0.02562 * 10 9 8 12 12 C 1.47538 * 119.99618 * 180.02562 * 10 9 8 13 13 C 1.39667 * 120.19893 * 0.02562 * 12 10 9 14 14 C 1.37827 * 119.91968 * 180.02562 * 13 12 10 15 15 C 1.38567 * 120.32166 * 359.97438 * 14 13 12 16 16 C 1.38018 * 120.40580 * 0.02562 * 15 14 13 17 17 C 1.38837 * 120.07003 * 359.97438 * 16 15 14 18 18 O 1.35520 * 120.15759 * 179.97438 * 17 16 15 19 19 C 1.34815 * 117.00282 * 354.39868 * 18 17 16 20 20 H 1.07997 * 119.99797 * 5.06669 * 19 18 17 21 21 C 1.38704 * 119.99765 * 185.06035 * 19 18 17 22 22 N 1.31514 * 119.99893 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99619 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47450 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47075 * 120.00488 * 23 21 19 26 26 H 1.48504 * 109.47043 * 240.00467 * 23 21 19 27 27 C 1.38164 * 120.05716 * 359.49464 * 7 6 5 28 28 H 1.09003 * 109.47679 * 299.99672 * 1 2 3 29 29 H 1.09003 * 109.47512 * 60.00570 * 1 2 3 30 30 H 1.09005 * 109.47336 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.02433 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.97137 * 180.02562 * 5 4 3 33 33 H 1.07995 * 119.94499 * 180.27361 * 6 5 4 34 34 H 1.09003 * 109.47032 * 149.72662 * 8 7 6 35 35 H 1.08996 * 109.47716 * 29.72374 * 8 7 6 36 36 H 0.97000 * 119.99784 * 0.02562 * 9 8 7 37 37 H 1.08005 * 120.03854 * 0.02562 * 13 12 10 38 38 H 1.08006 * 119.83455 * 179.97438 * 14 13 12 39 39 H 1.08005 * 119.79495 * 179.74708 * 15 14 13 40 40 H 1.08005 * 119.96966 * 179.97438 * 16 15 14 41 41 H 0.97008 * 119.99558 * 180.02562 * 22 21 19 42 42 H 1.08000 * 120.02542 * 180.23371 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3018 3.6758 0.0062 7 6 4.0559 2.5171 0.0003 8 6 5.5607 2.5983 0.0008 9 7 6.0487 2.6249 -1.3804 10 6 7.3718 2.6968 -1.6263 11 8 8.1605 2.7392 -0.7018 12 6 7.8632 2.7241 -3.0172 13 6 6.9608 2.6761 -4.0821 14 6 7.4262 2.7014 -5.3792 15 6 8.7864 2.7749 -5.6331 16 6 9.6900 2.8229 -4.5908 17 6 9.2394 2.7984 -3.2778 18 8 10.1250 2.8449 -2.2531 19 6 11.4339 2.7972 -2.5727 20 1 11.7374 2.8077 -3.6091 21 6 12.3906 2.7346 -1.5704 22 7 12.0209 2.7214 -0.3083 23 14 14.2042 2.6692 -2.0132 24 1 14.3545 2.6970 -3.4902 25 1 14.9004 3.8406 -1.4231 26 1 14.7995 1.4183 -1.4781 27 6 3.4310 1.2849 -0.0001 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2127 2.3203 0.0014 32 1 1.3338 4.5114 0.0019 33 1 3.7921 4.6381 0.0111 34 1 5.9713 1.7290 0.5145 35 1 5.8755 3.5064 0.5149 36 1 5.4194 2.5914 -2.1178 37 1 5.8996 2.6193 -3.8894 38 1 6.7272 2.6639 -6.2017 39 1 9.1420 2.7901 -6.6528 40 1 10.7487 2.8796 -4.7968 41 1 12.6900 2.6781 0.3927 42 1 4.0206 0.3800 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194048927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:55 Heat of formation + Delta-G solvation = -40.694198 kcal Electronic energy + Delta-G solvation = -26296.587607 eV Core-core repulsion = 22401.155498 eV Total energy + Delta-G solvation = -3895.432109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.39779 -39.53708 -38.30406 -37.51558 -36.30547 -34.27930 -32.32071 -31.60700 -30.72419 -29.99828 -28.89470 -27.62173 -26.05119 -25.26792 -22.93832 -22.68522 -21.54277 -21.04500 -19.86688 -18.30380 -17.97104 -17.33165 -16.49976 -16.18241 -16.10314 -16.00244 -15.44792 -14.73452 -14.61859 -14.29087 -14.19872 -14.03650 -13.85869 -13.71624 -13.34784 -13.23275 -12.89683 -12.56802 -12.43537 -12.23531 -12.03877 -11.70025 -11.66664 -11.34493 -11.29221 -11.10240 -11.00813 -10.89359 -10.74252 -10.42633 -9.56667 -9.23292 -8.86392 -8.75004 -8.54370 -8.39730 -8.24163 -7.28493 -6.42370 -4.02169 1.03727 1.25580 1.74396 2.34373 3.00093 3.13296 3.14211 3.19895 3.42543 3.77943 3.95260 4.00016 4.53702 4.56821 4.66752 4.80016 4.82195 4.87620 5.09112 5.12618 5.16166 5.18866 5.21639 5.33113 5.47480 5.56528 5.65058 5.74457 5.86934 5.95322 6.06523 6.14080 6.14848 6.22287 6.45856 6.55000 6.58943 6.71474 6.93211 6.95489 7.08934 7.16038 7.26275 7.31808 7.71906 7.94409 8.15339 8.97395 9.12184 9.70140 10.71570 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017235 B = 0.002632 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.181742 B =10637.296731 C =11541.649851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.123 3.877 4 C -0.206 4.206 5 C -0.083 4.083 6 C -0.138 4.138 7 C -0.059 4.059 8 C 0.164 3.836 9 N -0.740 5.740 10 C 0.554 3.446 11 O -0.500 6.500 12 C -0.226 4.226 13 C -0.038 4.038 14 C -0.231 4.231 15 C -0.051 4.051 16 C -0.238 4.238 17 C 0.190 3.810 18 O -0.124 6.124 19 C -0.403 4.403 20 H 0.094 0.906 21 C 0.044 3.956 22 N -0.832 5.832 23 Si 0.941 3.059 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.133 4.133 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.393 0.607 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.271 0.729 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.164 -1.071 -2.262 21.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.078 3.922 4 C -0.225 4.225 5 C -0.101 4.101 6 C -0.156 4.156 7 C -0.060 4.060 8 C 0.040 3.960 9 N -0.396 5.396 10 C 0.344 3.656 11 O -0.374 6.374 12 C -0.231 4.231 13 C -0.057 4.057 14 C -0.250 4.250 15 C -0.070 4.070 16 C -0.257 4.257 17 C 0.130 3.870 18 O -0.022 6.022 19 C -0.479 4.479 20 H 0.112 0.888 21 C -0.164 4.164 22 N -0.464 5.464 23 Si 0.765 3.235 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.152 4.152 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.228 0.772 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.081 0.919 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -20.346 -1.227 -1.019 20.408 hybrid contribution 0.171 0.094 -0.712 0.739 sum -20.175 -1.134 -1.731 20.281 Atomic orbital electron populations 1.23046 0.78489 1.03922 1.01261 1.86091 1.21285 1.26935 1.88778 1.18996 0.92243 0.84170 0.96837 1.21244 0.99920 0.92464 1.08880 1.20929 0.94519 0.96975 0.97692 1.21080 0.93663 0.98317 1.02589 1.19797 0.95490 0.92382 0.98310 1.20072 0.87624 1.03325 0.84937 1.45917 1.07526 1.79064 1.07070 1.18247 0.81234 0.76777 0.89341 1.90953 1.54259 1.47054 1.45170 1.18829 0.91402 1.20481 0.92358 1.20768 0.97205 0.95502 0.92187 1.20459 0.95296 1.13463 0.95771 1.20892 0.93113 0.95135 0.97813 1.21158 1.00649 1.11937 0.91985 1.19276 0.89198 0.90587 0.87960 1.84174 1.15647 1.73800 1.28600 1.21544 0.78708 1.53174 0.94487 0.88830 1.25387 1.00215 0.96202 0.94554 1.70141 1.34550 1.42655 0.99039 0.85663 0.80542 0.78343 0.78945 1.18985 1.20040 1.20022 1.20408 0.91301 0.98492 1.04991 0.92713 0.92679 0.88268 0.85600 0.85660 0.85438 0.90683 0.90583 0.77215 0.87075 0.87305 0.87208 0.85073 0.91927 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.36 10.50 -19.42 -0.20 -3.56 16 3 C 0.12 1.36 6.69 -39.22 -0.26 1.10 16 4 C -0.21 -1.92 9.04 -39.43 -0.36 -2.28 16 5 C -0.08 -0.77 10.04 -39.60 -0.40 -1.16 16 6 C -0.14 -1.47 9.70 -39.56 -0.38 -1.86 16 7 C -0.06 -0.72 5.25 -104.65 -0.55 -1.27 16 8 C 0.16 2.43 5.80 -5.19 -0.03 2.40 16 9 N -0.74 -12.23 5.50 -62.52 -0.34 -12.58 16 10 C 0.55 12.31 7.76 -12.47 -0.10 12.21 16 11 O -0.50 -13.77 15.17 -16.57 -0.25 -14.02 16 12 C -0.23 -4.96 5.89 -104.81 -0.62 -5.58 16 13 C -0.04 -0.66 9.53 -39.20 -0.37 -1.03 16 14 C -0.23 -3.84 10.02 -39.61 -0.40 -4.24 16 15 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 16 C -0.24 -5.16 9.16 -39.44 -0.36 -5.52 16 17 C 0.19 4.75 6.66 -38.60 -0.26 4.49 16 18 O -0.12 -3.69 7.84 -21.06 -0.16 -3.85 16 19 C -0.40 -11.48 9.49 30.90 0.29 -11.19 16 20 H 0.09 2.42 5.21 -52.49 -0.27 2.15 16 21 C 0.04 1.24 5.49 -17.52 -0.10 1.14 16 22 N -0.83 -25.25 13.67 55.48 0.76 -24.49 16 23 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 C -0.13 -1.60 9.64 -39.43 -0.38 -1.98 16 28 H 0.05 0.28 7.66 -51.93 -0.40 -0.11 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 34 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 35 H 0.08 1.17 8.08 -51.93 -0.42 0.75 16 36 H 0.39 5.45 6.49 -40.82 -0.27 5.18 16 37 H 0.11 1.53 6.40 -52.48 -0.34 1.19 16 38 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 39 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 40 H 0.13 2.81 5.64 -52.48 -0.30 2.51 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -35.55 361.82 -8.25 -43.80 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.81 Total: 8.52 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -3.67 Total: -14.92 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.41 Total: -37.07 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.62 Total: -21.43 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.55 -8.25 -43.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194048927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.108 kcal (2) G-P(sol) polarization free energy of solvation -35.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds