Wall clock time and date at job start Tue Mar 31 2020 14:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35898 * 116.99467 * 2 1 4 4 C 1.38753 * 120.05992 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94471 * 179.97438 * 4 3 2 6 6 C 1.38295 * 120.05444 * 359.75457 * 5 4 3 7 7 C 1.38247 * 120.10913 * 0.50099 * 6 5 4 8 8 C 1.50700 * 119.96730 * 179.77250 * 7 6 5 9 9 N 1.46508 * 109.46981 * 269.71964 * 8 7 6 10 10 C 1.34775 * 119.99760 * 179.97438 * 9 8 7 11 11 O 1.21590 * 119.99975 * 0.02562 * 10 9 8 12 12 C 1.47538 * 119.99618 * 180.02562 * 10 9 8 13 13 C 1.39667 * 120.19893 * 0.02562 * 12 10 9 14 14 C 1.37827 * 119.91968 * 180.02562 * 13 12 10 15 15 C 1.38567 * 120.32166 * 359.97438 * 14 13 12 16 16 C 1.38018 * 120.40580 * 0.02562 * 15 14 13 17 17 C 1.38837 * 120.07003 * 359.97438 * 16 15 14 18 18 O 1.35520 * 120.15759 * 179.97438 * 17 16 15 19 19 C 1.34815 * 117.00282 * 354.39868 * 18 17 16 20 20 H 1.07997 * 119.99797 * 5.06669 * 19 18 17 21 21 C 1.38704 * 119.99765 * 185.06035 * 19 18 17 22 22 N 1.31514 * 119.99893 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99619 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47450 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47075 * 120.00488 * 23 21 19 26 26 H 1.48504 * 109.47043 * 240.00467 * 23 21 19 27 27 C 1.38164 * 120.05716 * 359.49464 * 7 6 5 28 28 H 1.09003 * 109.47679 * 299.99672 * 1 2 3 29 29 H 1.09003 * 109.47512 * 60.00570 * 1 2 3 30 30 H 1.09005 * 109.47336 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.02433 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.97137 * 180.02562 * 5 4 3 33 33 H 1.07995 * 119.94499 * 180.27361 * 6 5 4 34 34 H 1.09003 * 109.47032 * 149.72662 * 8 7 6 35 35 H 1.08996 * 109.47716 * 29.72374 * 8 7 6 36 36 H 0.97000 * 119.99784 * 0.02562 * 9 8 7 37 37 H 1.08005 * 120.03854 * 0.02562 * 13 12 10 38 38 H 1.08006 * 119.83455 * 179.97438 * 14 13 12 39 39 H 1.08005 * 119.79495 * 179.74708 * 15 14 13 40 40 H 1.08005 * 119.96966 * 179.97438 * 16 15 14 41 41 H 0.97008 * 119.99558 * 180.02562 * 22 21 19 42 42 H 1.08000 * 120.02542 * 180.23371 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3018 3.6758 0.0062 7 6 4.0559 2.5171 0.0003 8 6 5.5607 2.5983 0.0008 9 7 6.0487 2.6249 -1.3804 10 6 7.3718 2.6968 -1.6263 11 8 8.1605 2.7392 -0.7018 12 6 7.8632 2.7241 -3.0172 13 6 6.9608 2.6761 -4.0821 14 6 7.4262 2.7014 -5.3792 15 6 8.7864 2.7749 -5.6331 16 6 9.6900 2.8229 -4.5908 17 6 9.2394 2.7984 -3.2778 18 8 10.1250 2.8449 -2.2531 19 6 11.4339 2.7972 -2.5727 20 1 11.7374 2.8077 -3.6091 21 6 12.3906 2.7346 -1.5704 22 7 12.0209 2.7214 -0.3083 23 14 14.2042 2.6692 -2.0132 24 1 14.3545 2.6970 -3.4902 25 1 14.9004 3.8406 -1.4231 26 1 14.7995 1.4183 -1.4781 27 6 3.4310 1.2849 -0.0001 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2127 2.3203 0.0014 32 1 1.3338 4.5114 0.0019 33 1 3.7921 4.6381 0.0111 34 1 5.9713 1.7290 0.5145 35 1 5.8755 3.5064 0.5149 36 1 5.4194 2.5914 -2.1178 37 1 5.8996 2.6193 -3.8894 38 1 6.7272 2.6639 -6.2017 39 1 9.1420 2.7901 -6.6528 40 1 10.7487 2.8796 -4.7968 41 1 12.6900 2.6781 0.3927 42 1 4.0206 0.3800 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194048927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:54 Heat of formation + Delta-G solvation = -64.751825 kcal Electronic energy + Delta-G solvation = -26297.630824 eV Core-core repulsion = 22401.155498 eV Total energy + Delta-G solvation = -3896.475326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.40258 -41.04140 -39.84538 -38.57916 -38.01640 -35.72657 -34.31853 -32.87087 -31.76974 -31.13453 -30.56460 -28.24723 -27.51386 -26.95860 -24.44939 -23.53738 -23.08053 -22.09851 -21.51112 -19.85587 -19.50072 -18.62521 -17.79937 -17.29273 -17.07247 -16.96083 -16.61982 -16.32852 -16.14624 -15.93124 -15.76499 -15.39430 -15.30269 -14.94154 -14.61343 -14.36677 -14.24840 -14.04775 -13.55216 -13.52931 -13.49977 -12.99208 -12.82130 -12.69262 -12.54757 -12.52719 -12.31198 -12.08896 -12.00662 -11.77719 -11.43105 -10.83961 -10.71264 -10.14846 -9.92369 -9.78855 -9.20643 -9.03418 -8.43989 -6.14863 0.12333 0.17620 0.44086 0.72860 1.32920 1.43662 1.52911 2.09046 2.16279 2.24324 2.37153 2.85573 2.88303 3.22818 3.47017 3.60056 3.84456 3.98144 4.07952 4.08789 4.20244 4.29258 4.31470 4.35701 4.42325 4.50759 4.52563 4.60530 4.72292 4.74731 4.76554 4.98278 5.00645 5.08320 5.14119 5.27891 5.43072 5.46327 5.48790 5.58612 5.61421 5.69829 5.74799 5.97025 6.17053 6.44521 6.66542 6.95359 7.45647 7.81172 8.76836 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017235 B = 0.002632 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.181742 B =10637.296731 C =11541.649851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.116 3.884 4 C -0.197 4.197 5 C -0.075 4.075 6 C -0.143 4.143 7 C -0.066 4.066 8 C 0.166 3.834 9 N -0.713 5.713 10 C 0.549 3.451 11 O -0.567 6.567 12 C -0.244 4.244 13 C -0.030 4.030 14 C -0.200 4.200 15 C -0.039 4.039 16 C -0.257 4.257 17 C 0.149 3.851 18 O -0.188 6.188 19 C -0.427 4.427 20 H 0.108 0.892 21 C -0.023 4.023 22 N -0.905 5.905 23 Si 1.023 2.977 24 H -0.245 1.245 25 H -0.268 1.268 26 H -0.269 1.269 27 C -0.151 4.151 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.134 0.866 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.410 0.590 37 H 0.156 0.844 38 H 0.164 0.836 39 H 0.155 0.845 40 H 0.124 0.876 41 H 0.271 0.729 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.993 -0.724 -5.942 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.070 3.930 4 C -0.216 4.216 5 C -0.093 4.093 6 C -0.162 4.162 7 C -0.067 4.067 8 C 0.043 3.957 9 N -0.368 5.368 10 C 0.339 3.661 11 O -0.446 6.446 12 C -0.249 4.249 13 C -0.049 4.049 14 C -0.219 4.219 15 C -0.057 4.057 16 C -0.276 4.276 17 C 0.094 3.906 18 O -0.091 6.091 19 C -0.503 4.503 20 H 0.125 0.875 21 C -0.222 4.222 22 N -0.541 5.541 23 Si 0.841 3.159 24 H -0.168 1.168 25 H -0.193 1.193 26 H -0.194 1.194 27 C -0.170 4.170 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.133 0.867 31 H 0.174 0.826 32 H 0.175 0.825 33 H 0.151 0.849 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.248 0.752 37 H 0.173 0.827 38 H 0.181 0.819 39 H 0.172 0.828 40 H 0.142 0.858 41 H 0.080 0.920 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -24.291 -0.886 -4.784 24.773 hybrid contribution 0.834 -0.054 0.168 0.853 sum -23.456 -0.940 -4.615 23.924 Atomic orbital electron populations 1.23365 0.76212 1.05558 1.02505 1.86068 1.23702 1.26916 1.88694 1.19080 0.91901 0.85198 0.96789 1.21595 1.01385 0.91623 1.06963 1.21275 0.93820 0.98259 0.95970 1.21216 0.94630 0.97806 1.02525 1.19435 0.93242 0.93365 1.00615 1.20047 0.90042 1.02049 0.83592 1.45673 1.05878 1.76658 1.08583 1.18555 0.82405 0.76020 0.89137 1.90932 1.56357 1.50305 1.47013 1.19259 0.91284 1.20699 0.93624 1.21277 0.98639 0.93536 0.91413 1.21166 0.95604 1.08417 0.96672 1.21432 0.93235 0.92350 0.98711 1.21304 1.01409 1.13119 0.91768 1.20075 0.90191 0.91380 0.88934 1.84180 1.16304 1.77837 1.30770 1.22085 0.79295 1.53514 0.95362 0.87524 1.26773 1.05747 0.95554 0.94164 1.70333 1.36315 1.46856 1.00620 0.84492 0.73242 0.78477 0.79655 1.16798 1.19349 1.19449 1.20367 0.92331 0.97947 1.06336 0.91453 0.91281 0.86689 0.82615 0.82486 0.84851 0.92502 0.91520 0.75227 0.82661 0.81868 0.82760 0.85816 0.92038 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -6.62 10.50 -92.41 -0.97 -7.59 16 3 C 0.12 2.36 6.69 22.51 0.15 2.51 16 4 C -0.20 -2.99 9.04 22.37 0.20 -2.79 16 5 C -0.08 -1.13 10.04 22.26 0.22 -0.90 16 6 C -0.14 -2.81 9.70 22.29 0.22 -2.60 16 7 C -0.07 -1.60 5.25 -19.88 -0.10 -1.70 16 8 C 0.17 5.23 5.80 85.63 0.50 5.73 16 9 N -0.71 -24.05 5.50 -469.99 -2.58 -26.63 16 10 C 0.55 25.67 7.76 86.70 0.67 26.35 16 11 O -0.57 -34.14 15.17 16.90 0.26 -33.88 16 12 C -0.24 -10.86 5.89 -19.99 -0.12 -10.98 16 13 C -0.03 -0.95 9.53 22.52 0.21 -0.73 16 14 C -0.20 -5.49 10.02 22.25 0.22 -5.27 16 15 C -0.04 -1.24 10.03 22.30 0.22 -1.01 16 16 C -0.26 -11.11 9.16 22.36 0.20 -10.91 16 17 C 0.15 7.83 6.66 22.91 0.15 7.98 16 18 O -0.19 -12.15 7.84 0.83 0.01 -12.14 16 19 C -0.43 -26.09 9.49 67.93 0.64 -25.45 16 20 H 0.11 5.85 5.21 -2.91 -0.02 5.83 16 21 C -0.02 -1.40 5.49 84.85 0.47 -0.93 16 22 N -0.91 -59.87 13.67 21.62 0.30 -59.57 16 23 Si 1.02 44.74 29.55 68.60 2.03 46.76 16 24 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 C -0.15 -3.62 9.64 22.37 0.22 -3.41 16 28 H 0.07 0.47 7.66 -2.39 -0.02 0.46 16 29 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 30 H 0.11 0.70 8.14 -2.38 -0.02 0.69 16 31 H 0.16 1.40 6.30 -2.91 -0.02 1.38 16 32 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 33 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 34 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 35 H 0.07 2.22 8.08 -2.39 -0.02 2.20 16 36 H 0.41 10.72 6.49 -92.71 -0.60 10.12 16 37 H 0.16 3.45 6.40 -2.91 -0.02 3.43 16 38 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 39 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 40 H 0.12 5.42 5.64 -2.91 -0.02 5.40 16 41 H 0.27 16.33 8.31 -92.70 -0.77 15.56 16 42 H 0.12 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -89.98 361.82 4.70 -85.28 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.47 Total: 30.61 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 5.20 Total: -22.83 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -2.29 Total: -86.21 kcal Atomic # 8 Polarization: -52.91 SS G_CDS: -0.71 Total: -53.62 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -89.98 4.70 -85.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194048927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.529 kcal (2) G-P(sol) polarization free energy of solvation -89.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds