Wall clock time and date at job start Tue Mar 31 2020 14:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99969 * 2 1 4 4 C 1.50705 * 109.47264 * 179.97438 * 3 2 1 5 5 C 1.38129 * 120.03659 * 0.02562 * 4 3 2 6 6 C 1.38254 * 120.07238 * 180.27491 * 5 4 3 7 7 C 1.38311 * 120.14740 * 359.48725 * 6 5 4 8 8 C 1.38083 * 120.06748 * 0.51066 * 7 6 5 9 9 C 1.38871 * 120.03553 * 180.02562 * 4 3 2 10 10 N 1.39852 * 120.07363 * 359.95820 * 9 4 3 11 11 C 1.34775 * 120.00015 * 204.85181 * 10 9 4 12 12 O 1.21604 * 119.99829 * 5.56173 * 11 10 9 13 13 C 1.47503 * 120.00011 * 185.55981 * 11 10 9 14 14 C 1.39676 * 120.19645 * 359.97438 * 13 11 10 15 15 C 1.37822 * 119.91548 * 180.02562 * 14 13 11 16 16 C 1.38573 * 120.32837 * 0.02562 * 15 14 13 17 17 C 1.38029 * 120.40185 * 0.02562 * 16 15 14 18 18 C 1.38835 * 120.07529 * 359.71807 * 17 16 15 19 19 O 1.35510 * 120.16738 * 180.30554 * 18 17 16 20 20 C 1.34815 * 116.99978 * 5.15605 * 19 18 17 21 21 H 1.08005 * 119.99971 * 354.99250 * 20 19 18 22 22 C 1.38699 * 120.00482 * 174.98152 * 20 19 18 23 23 N 1.31525 * 119.99603 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00376 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47089 * 90.00352 * 24 22 20 26 26 H 1.48506 * 109.47101 * 210.00424 * 24 22 20 27 27 H 1.48500 * 109.47135 * 330.00372 * 24 22 20 28 28 H 1.09001 * 109.47030 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47142 * 299.99587 * 1 2 3 30 30 H 1.08996 * 109.47369 * 60.00032 * 1 2 3 31 31 H 1.09002 * 109.46953 * 59.99818 * 3 2 1 32 32 H 1.09000 * 109.46979 * 299.99898 * 3 2 1 33 33 H 1.07998 * 119.95903 * 359.97438 * 5 4 3 34 34 H 1.07999 * 119.93090 * 179.72049 * 6 5 4 35 35 H 1.08000 * 119.96857 * 180.25410 * 7 6 5 36 36 H 1.08009 * 120.03938 * 179.72123 * 8 7 6 37 37 H 0.96994 * 119.99613 * 24.84447 * 10 9 4 38 38 H 1.08004 * 120.04533 * 0.02630 * 14 13 11 39 39 H 1.08004 * 119.83731 * 179.97438 * 15 14 13 40 40 H 1.08003 * 119.80118 * 179.97438 * 16 15 14 41 41 H 1.07997 * 119.96643 * 180.02562 * 17 16 15 42 42 H 0.97001 * 120.00087 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1074 -0.0601 0.0006 6 6 5.4856 -0.1701 0.0069 7 6 6.2732 0.9668 0.0026 8 6 5.6848 2.2160 0.0026 9 6 4.3004 2.3301 0.0013 10 7 3.7013 3.5938 0.0005 11 6 4.3702 4.6564 -0.4895 12 8 5.4520 4.5007 -1.0225 13 6 3.7899 6.0080 -0.3793 14 6 2.5473 6.1913 0.2316 15 6 2.0102 7.4567 0.3310 16 6 2.6969 8.5498 -0.1729 17 6 3.9252 8.3838 -0.7802 18 6 4.4842 7.1173 -0.8846 19 8 5.6929 6.9529 -1.4749 20 6 6.3504 8.0702 -1.8448 21 1 5.8764 9.0351 -1.7409 22 6 7.6355 7.9807 -2.3586 23 7 8.2127 6.8057 -2.4854 24 14 8.5468 9.5290 -2.8705 25 1 9.3133 10.0575 -1.7137 26 1 9.4815 9.2094 -3.9794 27 1 7.5699 10.5507 -3.3255 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.4952 -0.9498 0.0005 34 1 5.9482 -1.1460 0.0114 35 1 7.3495 0.8775 0.0034 36 1 6.3003 3.1036 0.0038 37 1 2.8044 3.7055 0.3525 38 1 2.0079 5.3426 0.6256 39 1 1.0491 7.5970 0.8033 40 1 2.2679 9.5376 -0.0908 41 1 4.4544 9.2407 -1.1701 42 1 9.1113 6.7430 -2.8451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194194915.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:41 Heat of formation + Delta-G solvation = -41.016055 kcal Electronic energy + Delta-G solvation = -27064.281257 eV Core-core repulsion = 23168.835191 eV Total energy + Delta-G solvation = -3895.446066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.40961 -39.22049 -38.11425 -37.32910 -36.44574 -34.35258 -32.42657 -31.69329 -30.99598 -29.13715 -28.90522 -27.26984 -25.55697 -25.44602 -23.73826 -22.27124 -21.52336 -20.97767 -19.87286 -18.26899 -17.91535 -17.00695 -16.52706 -16.29062 -16.07527 -15.87681 -14.85977 -14.71361 -14.62553 -14.37576 -14.34465 -13.93686 -13.89735 -13.63623 -13.38667 -13.11216 -12.82260 -12.62632 -12.60125 -12.09769 -11.80442 -11.77232 -11.42066 -11.24819 -11.08590 -10.97542 -10.95624 -10.87249 -10.51352 -10.11418 -9.97259 -9.63878 -8.95177 -8.93931 -8.46933 -8.40484 -7.69675 -7.39735 -6.52339 -4.12133 1.39125 1.63453 1.79435 2.22542 3.07726 3.08816 3.13564 3.41063 3.52562 3.56913 3.87279 4.08410 4.53772 4.80423 4.96669 5.04917 5.07422 5.09902 5.12969 5.19154 5.29273 5.34636 5.39814 5.42031 5.43734 5.61168 5.67929 5.82140 5.93715 5.96940 6.01676 6.33387 6.45980 6.51683 6.56594 6.64290 6.78587 6.81627 6.91774 6.96284 7.02656 7.14425 7.20926 7.37525 7.59060 7.79798 7.89791 8.81771 8.88078 9.57003 10.61044 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.003603 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.255765 B = 7769.612958 C = 9616.394778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.109 3.891 4 C -0.138 4.138 5 C -0.078 4.078 6 C -0.153 4.153 7 C -0.096 4.096 8 C -0.131 4.131 9 C 0.175 3.825 10 N -0.683 5.683 11 C 0.553 3.447 12 O -0.476 6.476 13 C -0.232 4.232 14 C -0.037 4.037 15 C -0.229 4.229 16 C -0.048 4.048 17 C -0.235 4.235 18 C 0.191 3.809 19 O -0.121 6.121 20 C -0.404 4.404 21 H 0.095 0.905 22 C 0.046 3.954 23 N -0.829 5.829 24 Si 0.942 3.058 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.266 1.266 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.130 0.870 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.153 0.847 37 H 0.401 0.599 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.133 0.867 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.435 -8.144 6.259 16.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.032 3.968 4 C -0.142 4.142 5 C -0.097 4.097 6 C -0.172 4.172 7 C -0.114 4.114 8 C -0.152 4.152 9 C 0.079 3.921 10 N -0.328 5.328 11 C 0.344 3.656 12 O -0.349 6.349 13 C -0.237 4.237 14 C -0.056 4.056 15 C -0.248 4.248 16 C -0.067 4.067 17 C -0.254 4.254 18 C 0.130 3.870 19 O -0.019 6.019 20 C -0.480 4.480 21 H 0.113 0.887 22 C -0.163 4.163 23 N -0.460 5.460 24 Si 0.766 3.234 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.190 1.190 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.147 0.853 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.170 0.830 37 H 0.237 0.763 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.151 0.849 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.110 -8.623 5.684 15.169 hybrid contribution -0.384 1.167 -0.069 1.230 sum -11.494 -7.457 5.615 14.807 Atomic orbital electron populations 1.22754 0.80911 1.02806 1.00128 1.87847 1.19622 1.27392 1.95456 1.21085 0.90483 0.84930 1.00261 1.19258 0.93293 0.92897 1.08707 1.20663 0.94361 0.96441 0.98217 1.21054 0.93710 0.98353 1.04092 1.21101 0.99910 0.92007 0.98412 1.21543 0.93190 0.99502 1.00916 1.17525 0.92300 0.83568 0.98706 1.43623 1.19571 1.06306 1.63326 1.18387 0.85183 0.83949 0.78066 1.90918 1.19692 1.84678 1.39592 1.18675 0.98885 0.91019 1.15123 1.20732 0.92842 0.96856 0.95195 1.20456 1.01705 0.92654 1.10024 1.20924 0.93591 0.97930 0.94225 1.21173 0.98243 0.97425 1.08597 1.19219 0.86918 0.91757 0.89073 1.84151 1.23535 1.33562 1.60661 1.21519 0.97754 0.85300 1.43387 0.88748 1.25404 0.95764 0.98738 0.96377 1.70118 1.14145 1.23176 1.38555 0.85710 0.79345 0.79722 0.78653 1.19667 1.20059 1.19020 0.89552 0.93985 0.93923 0.92544 0.92069 0.85258 0.86390 0.85931 0.82995 0.76338 0.87228 0.87129 0.87023 0.84922 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.43 9.18 -35.23 -0.32 -4.75 16 3 C 0.11 1.28 5.29 36.01 0.19 1.47 16 4 C -0.14 -2.03 5.90 -104.43 -0.62 -2.64 16 5 C -0.08 -1.09 9.37 -39.62 -0.37 -1.46 16 6 C -0.15 -2.10 10.04 -39.55 -0.40 -2.50 16 7 C -0.10 -1.49 10.04 -39.61 -0.40 -1.89 16 8 C -0.13 -2.42 8.71 -39.39 -0.34 -2.77 16 9 C 0.18 2.98 6.41 -83.71 -0.54 2.44 16 10 N -0.68 -11.44 5.11 -10.81 -0.06 -11.50 16 11 C 0.55 11.88 7.57 -12.49 -0.09 11.78 16 12 O -0.48 -12.50 12.33 -16.58 -0.20 -12.70 16 13 C -0.23 -4.86 5.89 -104.82 -0.62 -5.48 16 14 C -0.04 -0.61 9.53 -39.20 -0.37 -0.99 16 15 C -0.23 -3.57 10.02 -39.61 -0.40 -3.97 16 16 C -0.05 -0.81 10.03 -39.53 -0.40 -1.21 16 17 C -0.24 -4.86 9.16 -39.44 -0.36 -5.22 16 18 C 0.19 4.57 6.66 -38.59 -0.26 4.31 16 19 O -0.12 -3.47 7.84 -21.03 -0.16 -3.64 16 20 C -0.40 -11.12 9.49 30.90 0.29 -10.83 16 21 H 0.10 2.35 5.20 -52.48 -0.27 2.08 16 22 C 0.05 1.24 5.49 -17.51 -0.10 1.14 16 23 N -0.83 -24.40 13.67 55.48 0.76 -23.64 16 24 Si 0.94 20.07 29.55 -169.99 -5.02 15.05 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 26 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 27 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.56 7.86 -51.93 -0.41 0.15 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.13 1.62 7.00 -52.49 -0.37 1.25 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.15 3.28 5.79 -52.48 -0.30 2.98 16 37 H 0.40 5.25 5.72 -40.82 -0.23 5.01 16 38 H 0.11 1.35 6.42 -52.48 -0.34 1.02 16 39 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 40 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 41 H 0.13 2.70 5.63 -52.49 -0.30 2.41 16 42 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 356.36 15.07 5.37 5.37 Total: -1.00 -33.58 356.36 -8.04 -41.62 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -4.74 Total: 10.64 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -3.66 Total: -16.44 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.70 Total: -35.14 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.69 Total: -21.09 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.58 -8.04 -41.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194194915.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.600 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds