Wall clock time and date at job start Tue Mar 31 2020 14:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99969 * 2 1 4 4 C 1.50705 * 109.47264 * 179.97438 * 3 2 1 5 5 C 1.38129 * 120.03659 * 0.02562 * 4 3 2 6 6 C 1.38254 * 120.07238 * 180.27491 * 5 4 3 7 7 C 1.38311 * 120.14740 * 359.48725 * 6 5 4 8 8 C 1.38083 * 120.06748 * 0.51066 * 7 6 5 9 9 C 1.38871 * 120.03553 * 180.02562 * 4 3 2 10 10 N 1.39852 * 120.07363 * 359.95820 * 9 4 3 11 11 C 1.34775 * 120.00015 * 204.85181 * 10 9 4 12 12 O 1.21604 * 119.99829 * 5.56173 * 11 10 9 13 13 C 1.47503 * 120.00011 * 185.55981 * 11 10 9 14 14 C 1.39676 * 120.19645 * 359.97438 * 13 11 10 15 15 C 1.37822 * 119.91548 * 180.02562 * 14 13 11 16 16 C 1.38573 * 120.32837 * 0.02562 * 15 14 13 17 17 C 1.38029 * 120.40185 * 0.02562 * 16 15 14 18 18 C 1.38835 * 120.07529 * 359.71807 * 17 16 15 19 19 O 1.35510 * 120.16738 * 180.30554 * 18 17 16 20 20 C 1.34815 * 116.99978 * 5.15605 * 19 18 17 21 21 H 1.08005 * 119.99971 * 354.99250 * 20 19 18 22 22 C 1.38699 * 120.00482 * 174.98152 * 20 19 18 23 23 N 1.31525 * 119.99603 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00376 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47089 * 90.00352 * 24 22 20 26 26 H 1.48506 * 109.47101 * 210.00424 * 24 22 20 27 27 H 1.48500 * 109.47135 * 330.00372 * 24 22 20 28 28 H 1.09001 * 109.47030 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47142 * 299.99587 * 1 2 3 30 30 H 1.08996 * 109.47369 * 60.00032 * 1 2 3 31 31 H 1.09002 * 109.46953 * 59.99818 * 3 2 1 32 32 H 1.09000 * 109.46979 * 299.99898 * 3 2 1 33 33 H 1.07998 * 119.95903 * 359.97438 * 5 4 3 34 34 H 1.07999 * 119.93090 * 179.72049 * 6 5 4 35 35 H 1.08000 * 119.96857 * 180.25410 * 7 6 5 36 36 H 1.08009 * 120.03938 * 179.72123 * 8 7 6 37 37 H 0.96994 * 119.99613 * 24.84447 * 10 9 4 38 38 H 1.08004 * 120.04533 * 0.02630 * 14 13 11 39 39 H 1.08004 * 119.83731 * 179.97438 * 15 14 13 40 40 H 1.08003 * 119.80118 * 179.97438 * 16 15 14 41 41 H 1.07997 * 119.96643 * 180.02562 * 17 16 15 42 42 H 0.97001 * 120.00087 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1074 -0.0601 0.0006 6 6 5.4856 -0.1701 0.0069 7 6 6.2732 0.9668 0.0026 8 6 5.6848 2.2160 0.0026 9 6 4.3004 2.3301 0.0013 10 7 3.7013 3.5938 0.0005 11 6 4.3702 4.6564 -0.4895 12 8 5.4520 4.5007 -1.0225 13 6 3.7899 6.0080 -0.3793 14 6 2.5473 6.1913 0.2316 15 6 2.0102 7.4567 0.3310 16 6 2.6969 8.5498 -0.1729 17 6 3.9252 8.3838 -0.7802 18 6 4.4842 7.1173 -0.8846 19 8 5.6929 6.9529 -1.4749 20 6 6.3504 8.0702 -1.8448 21 1 5.8764 9.0351 -1.7409 22 6 7.6355 7.9807 -2.3586 23 7 8.2127 6.8057 -2.4854 24 14 8.5468 9.5290 -2.8705 25 1 9.3133 10.0575 -1.7137 26 1 9.4815 9.2094 -3.9794 27 1 7.5699 10.5507 -3.3255 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.4952 -0.9498 0.0005 34 1 5.9482 -1.1460 0.0114 35 1 7.3495 0.8775 0.0034 36 1 6.3003 3.1036 0.0038 37 1 2.8044 3.7055 0.3525 38 1 2.0079 5.3426 0.6256 39 1 1.0491 7.5970 0.8033 40 1 2.2679 9.5376 -0.0908 41 1 4.4544 9.2407 -1.1701 42 1 9.1113 6.7430 -2.8451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194194915.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:40 Heat of formation + Delta-G solvation = -62.953794 kcal Electronic energy + Delta-G solvation = -27065.232549 eV Core-core repulsion = 23168.835191 eV Total energy + Delta-G solvation = -3896.397358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.87701 -40.71357 -39.46011 -38.40456 -38.05930 -35.85796 -34.35048 -32.84584 -32.46158 -30.64136 -30.30776 -28.10422 -27.39704 -26.39577 -25.22670 -23.70500 -22.96522 -22.23678 -21.39681 -19.92733 -19.51634 -18.44718 -17.93506 -17.42481 -17.06864 -16.84210 -16.40170 -16.25970 -16.15388 -15.94922 -15.49264 -15.43062 -15.37486 -15.07105 -14.76714 -14.38389 -14.29667 -14.15075 -13.63708 -13.56945 -13.16804 -13.01738 -12.81303 -12.61240 -12.55181 -12.38600 -12.16643 -12.13233 -12.03217 -11.51979 -11.39092 -10.85200 -10.77722 -10.58644 -9.91328 -9.69067 -9.13212 -8.94329 -8.46887 -6.17859 -0.05766 0.36821 0.48535 0.69791 1.31586 1.42938 1.50379 1.98119 2.02058 2.14080 2.72094 2.80128 2.89419 3.18925 3.41018 3.72094 3.86154 4.02082 4.08095 4.16585 4.23609 4.28435 4.39845 4.46112 4.48438 4.54578 4.62531 4.63850 4.66897 4.70772 4.91763 4.92812 5.04293 5.08741 5.10773 5.34869 5.38833 5.45229 5.54310 5.58199 5.64884 5.66745 5.93288 6.09020 6.12965 6.20884 6.48447 6.92348 7.26946 7.75996 8.73134 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.003603 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.255765 B = 7769.612958 C = 9616.394778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.110 3.890 4 C -0.130 4.130 5 C -0.079 4.079 6 C -0.139 4.139 7 C -0.107 4.107 8 C -0.163 4.163 9 C 0.151 3.849 10 N -0.659 5.659 11 C 0.547 3.453 12 O -0.537 6.537 13 C -0.247 4.247 14 C -0.030 4.030 15 C -0.198 4.198 16 C -0.036 4.036 17 C -0.257 4.257 18 C 0.153 3.847 19 O -0.187 6.187 20 C -0.427 4.427 21 H 0.108 0.892 22 C -0.021 4.021 23 N -0.903 5.903 24 Si 1.021 2.979 25 H -0.262 1.262 26 H -0.273 1.273 27 H -0.247 1.247 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.131 0.869 36 H 0.106 0.894 37 H 0.420 0.580 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.156 0.844 41 H 0.125 0.875 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.330 -8.362 8.146 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.033 3.967 4 C -0.133 4.133 5 C -0.097 4.097 6 C -0.158 4.158 7 C -0.126 4.126 8 C -0.183 4.183 9 C 0.056 3.944 10 N -0.306 5.306 11 C 0.339 3.661 12 O -0.414 6.414 13 C -0.252 4.252 14 C -0.048 4.048 15 C -0.216 4.216 16 C -0.054 4.054 17 C -0.276 4.276 18 C 0.098 3.902 19 O -0.089 6.089 20 C -0.503 4.503 21 H 0.126 0.874 22 C -0.220 4.220 23 N -0.538 5.538 24 Si 0.839 3.161 25 H -0.187 1.187 26 H -0.198 1.198 27 H -0.170 1.170 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.149 0.851 36 H 0.124 0.876 37 H 0.260 0.740 38 H 0.177 0.823 39 H 0.184 0.816 40 H 0.173 0.827 41 H 0.142 0.858 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.129 -8.851 7.629 19.917 hybrid contribution 0.646 1.058 -0.408 1.305 sum -15.483 -7.793 7.221 18.777 Atomic orbital electron populations 1.22981 0.78926 1.04180 1.01123 1.87804 1.21716 1.26931 1.95652 1.21093 0.88284 0.85723 1.01565 1.19567 0.95161 0.91993 1.06609 1.21029 0.94632 0.96943 0.97120 1.21419 0.93781 0.98900 1.01699 1.21265 1.00838 0.91720 0.98771 1.21361 0.94158 0.99153 1.03653 1.17621 0.92002 0.84266 1.00551 1.43231 1.19844 1.05356 1.62198 1.18699 0.84612 0.85283 0.77500 1.90922 1.22425 1.85610 1.42393 1.19123 1.00576 0.90052 1.15476 1.21297 0.90730 0.99512 0.93291 1.21184 1.02751 0.91239 1.06463 1.21475 0.91535 1.00787 0.91615 1.21318 1.00209 0.95888 1.10158 1.20032 0.86356 0.94299 0.89549 1.84163 1.26022 1.34193 1.64550 1.22040 0.98508 0.85987 1.43785 0.87444 1.26747 0.96529 1.02457 0.96295 1.70316 1.14759 1.26248 1.42492 0.84573 0.77916 0.75239 0.78328 1.18704 1.19816 1.17014 0.88127 0.92513 0.93354 0.90055 0.91704 0.83008 0.82939 0.85062 0.87572 0.74048 0.82319 0.81574 0.82659 0.85751 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.40 -7.79 9.18 -148.98 -1.37 -9.16 16 3 C 0.11 2.23 5.29 71.24 0.38 2.60 16 4 C -0.13 -3.61 5.90 -19.74 -0.12 -3.72 16 5 C -0.08 -2.02 9.37 22.25 0.21 -1.81 16 6 C -0.14 -3.62 10.04 22.29 0.22 -3.40 16 7 C -0.11 -3.49 10.04 22.25 0.22 -3.27 16 8 C -0.16 -6.51 8.71 22.39 0.20 -6.32 16 9 C 0.15 5.24 6.41 38.17 0.24 5.49 16 10 N -0.66 -22.17 5.11 -306.37 -1.57 -23.74 16 11 C 0.55 24.87 7.57 86.69 0.66 25.53 16 12 O -0.54 -31.25 12.33 16.85 0.21 -31.05 16 13 C -0.25 -10.51 5.89 -19.99 -0.12 -10.63 16 14 C -0.03 -0.86 9.53 22.52 0.21 -0.65 16 15 C -0.20 -4.96 10.02 22.25 0.22 -4.73 16 16 C -0.04 -1.07 10.03 22.30 0.22 -0.84 16 17 C -0.26 -10.63 9.16 22.36 0.20 -10.43 16 18 C 0.15 7.73 6.66 22.91 0.15 7.88 16 19 O -0.19 -11.74 7.84 0.94 0.01 -11.73 16 20 C -0.43 -25.54 9.49 67.93 0.64 -24.89 16 21 H 0.11 5.73 5.20 -2.91 -0.02 5.72 16 22 C -0.02 -1.22 5.49 84.85 0.47 -0.75 16 23 N -0.90 -58.67 13.67 21.62 0.30 -58.37 16 24 Si 1.02 43.90 29.55 68.60 2.03 45.93 16 25 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 27 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 28 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 1.26 7.86 -2.39 -0.02 1.24 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.15 3.26 7.00 -2.91 -0.02 3.24 16 34 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 35 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 36 H 0.11 5.26 5.79 -2.91 -0.02 5.24 16 37 H 0.42 9.96 5.72 -92.71 -0.53 9.43 16 38 H 0.16 2.95 6.42 -2.91 -0.02 2.94 16 39 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 40 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 41 H 0.12 5.24 5.63 -2.91 -0.02 5.22 16 42 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -87.49 356.36 5.42 -82.08 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.54 Total: 34.45 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 5.27 Total: -28.42 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -1.27 Total: -82.11 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -1.15 Total: -51.94 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -87.49 5.42 -82.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194194915.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.123 kcal (2) G-P(sol) polarization free energy of solvation -87.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds