Wall clock time and date at job start Tue Mar 31 2020 14:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36008 * 116.99694 * 2 1 4 4 C 1.38525 * 120.00243 * 359.97438 * 3 2 1 5 5 C 1.38457 * 120.33518 * 179.97438 * 4 3 2 6 6 C 1.37832 * 120.33959 * 0.02562 * 5 4 3 7 7 C 1.39762 * 119.99142 * 359.97438 * 6 5 4 8 8 C 1.47395 * 120.16327 * 179.97438 * 7 6 5 9 9 N 1.29417 * 120.00319 * 357.16892 * 8 7 6 10 10 C 1.46508 * 119.99973 * 308.71885 * 9 8 7 11 11 C 1.50701 * 109.46956 * 146.10977 * 10 9 8 12 12 C 1.38303 * 119.93004 * 269.72427 * 11 10 9 13 13 C 1.38107 * 120.06376 * 179.72393 * 12 11 10 14 14 C 1.38881 * 119.93183 * 0.57432 * 13 12 11 15 15 O 1.35748 * 120.06657 * 179.67493 * 14 13 12 16 16 C 1.34833 * 116.99837 * 174.37412 * 15 14 13 17 17 H 1.07994 * 119.99909 * 5.11432 * 16 15 14 18 18 C 1.38652 * 119.99900 * 185.11103 * 16 15 14 19 19 N 1.31557 * 120.00021 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99867 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47217 * 60.00384 * 20 18 16 22 22 H 1.48503 * 109.47231 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47462 * 300.00342 * 20 18 16 24 24 C 1.38878 * 119.86277 * 359.70275 * 14 13 12 25 25 C 1.38103 * 119.92875 * 359.97438 * 24 14 13 26 26 C 1.39065 * 119.99850 * 180.23528 * 3 2 1 27 27 O 1.35802 * 120.17039 * 0.02562 * 26 3 2 28 28 H 1.08998 * 109.46914 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47078 * 299.99833 * 1 2 3 30 30 H 1.09004 * 109.47101 * 60.00406 * 1 2 3 31 31 H 1.08004 * 119.83050 * 359.95555 * 4 3 2 32 32 H 1.08010 * 119.83029 * 179.97438 * 5 4 3 33 33 H 1.07997 * 120.00082 * 179.97438 * 6 5 4 34 34 H 1.08007 * 120.00073 * 177.44618 * 8 7 6 35 35 H 1.08998 * 109.46950 * 266.11115 * 10 9 8 36 36 H 1.08992 * 109.47058 * 26.11238 * 10 9 8 37 37 H 1.07995 * 119.96820 * 359.97438 * 12 11 10 38 38 H 1.08006 * 120.02809 * 180.27094 * 13 12 11 39 39 H 0.97005 * 119.99764 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.03565 * 179.97438 * 24 14 13 41 41 H 1.08000 * 119.96083 * 180.02562 * 25 24 14 42 42 H 0.96696 * 114.00691 * 275.23781 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2920 2.3736 -0.0005 5 6 1.9133 3.6110 0.0000 6 6 3.2888 3.6993 0.0005 7 6 4.0636 2.5361 0.0011 8 6 5.5348 2.6262 0.0011 9 7 6.1123 3.7830 -0.0548 10 6 5.7320 4.7421 -1.0949 11 6 5.8315 6.1426 -0.5473 12 6 4.7341 6.7257 0.0599 13 6 4.8239 8.0068 0.5678 14 6 6.0140 8.7142 0.4576 15 8 6.1032 9.9760 0.9499 16 6 7.3170 10.5622 0.9151 17 1 8.1445 10.0622 0.4341 18 6 7.5026 11.8071 1.4968 19 7 6.4945 12.4160 2.0832 20 14 9.1842 12.6188 1.4492 21 1 9.5982 12.8175 0.0370 22 1 9.1188 13.9339 2.1360 23 1 10.1729 11.7503 2.1373 24 6 7.1123 8.1280 -0.1579 25 6 7.0183 6.8441 -0.6577 26 6 3.4352 1.2847 -0.0049 27 8 4.1782 0.1480 -0.0103 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.2136 2.3139 -0.0017 32 1 1.3171 4.5116 -0.0008 33 1 3.7677 4.6673 0.0005 34 1 6.1309 1.7265 0.0432 35 1 6.4019 4.6372 -1.9483 36 1 4.7073 4.5477 -1.4113 37 1 3.8074 6.1771 0.1406 38 1 3.9679 8.4599 1.0458 39 1 6.6245 13.2868 2.4905 40 1 8.0390 8.6756 -0.2454 41 1 7.8722 6.3876 -1.1361 42 1 4.3292 -0.2275 0.8679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255123367.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:02 Heat of formation + Delta-G solvation = -2.300024 kcal Electronic energy + Delta-G solvation = -25994.160399 eV Core-core repulsion = 22100.393186 eV Total energy + Delta-G solvation = -3893.767213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.77742 -39.18567 -38.46183 -37.35658 -36.56820 -35.45236 -32.37845 -31.06935 -30.37083 -29.91858 -29.67213 -27.66581 -26.14688 -25.03923 -23.20129 -22.85640 -21.99112 -20.74036 -19.97709 -18.70322 -18.06324 -17.67243 -16.99897 -16.86999 -16.32292 -15.75191 -15.36369 -14.94176 -14.85453 -14.62116 -14.60373 -14.33445 -14.00018 -13.65751 -13.50943 -13.14674 -12.82723 -12.65930 -12.59590 -12.29194 -12.05702 -11.77666 -11.63388 -11.52004 -11.31830 -11.19396 -11.01453 -10.83693 -10.61981 -10.44048 -10.23268 -9.35597 -9.20894 -8.83911 -8.48165 -8.21174 -8.10733 -7.19086 -6.46250 -4.05059 0.35679 1.03274 1.94524 2.18793 2.30180 2.83773 3.12864 3.14321 3.16852 3.37115 3.88028 3.96001 4.39473 4.45948 4.51499 4.69324 4.74949 4.83672 4.91677 4.98173 5.06448 5.10314 5.12815 5.25314 5.32254 5.48026 5.48424 5.65819 5.75968 5.77260 5.82624 5.85938 6.10725 6.18656 6.30369 6.33904 6.40230 6.66609 6.84879 6.88144 7.03004 7.19664 7.35843 7.41687 7.42767 7.77917 7.90251 7.98697 8.99252 9.68564 10.71567 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.028168 B = 0.002163 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.808124 B =12942.726127 C =13669.390921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.092 3.908 4 C -0.184 4.184 5 C -0.090 4.090 6 C -0.135 4.135 7 C -0.102 4.102 8 C 0.206 3.794 9 N -0.539 5.539 10 C 0.112 3.888 11 C -0.185 4.185 12 C -0.075 4.075 13 C -0.191 4.191 14 C 0.156 3.844 15 O -0.177 6.177 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.942 3.058 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.233 4.233 25 C -0.050 4.050 26 C 0.103 3.897 27 O -0.481 6.481 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.151 0.849 34 H 0.159 0.841 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.271 0.729 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.784 -23.163 -4.544 25.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.046 3.954 4 C -0.204 4.204 5 C -0.108 4.108 6 C -0.155 4.155 7 C -0.106 4.106 8 C -0.001 4.001 9 N -0.248 5.248 10 C -0.013 4.013 11 C -0.187 4.187 12 C -0.094 4.094 13 C -0.210 4.210 14 C 0.102 3.898 15 O -0.080 6.080 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.252 4.252 25 C -0.068 4.068 26 C 0.055 3.945 27 O -0.291 6.291 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.168 0.832 34 H 0.176 0.824 35 H 0.113 0.887 36 H 0.068 0.932 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.146 0.854 41 H 0.127 0.873 42 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -9.165 -22.227 -4.585 24.476 hybrid contribution -0.369 0.354 0.370 0.631 sum -9.535 -21.874 -4.214 24.231 Atomic orbital electron populations 1.23093 0.78414 1.04060 1.01418 1.86137 1.21263 1.26110 1.88802 1.19407 0.91744 0.84986 0.99242 1.21275 1.00208 0.91929 1.06975 1.20958 0.94512 0.97284 0.98023 1.21980 0.94059 0.99186 1.00263 1.20569 0.96449 0.91731 1.01822 1.24715 0.88795 0.95047 0.91561 1.70610 1.47355 1.01087 1.05797 1.21219 0.99994 0.89457 0.90667 1.19051 0.95314 0.95182 1.09110 1.20535 0.96935 0.94331 0.97576 1.20144 0.97342 0.95128 1.08396 1.19383 0.93337 0.85578 0.91505 1.83975 1.32991 1.21150 1.69852 1.21293 0.85801 1.01696 1.38050 0.89055 1.25300 0.99562 0.95932 0.95729 1.70032 1.30773 1.15135 1.33788 0.85773 0.80241 0.78495 0.78888 1.19465 1.20267 1.19456 1.21174 1.00141 0.96937 1.06982 1.20590 0.95877 0.93424 0.96944 1.17818 0.85860 0.86015 1.04805 1.84801 1.71946 1.38359 1.33976 0.88112 0.92595 0.92567 0.84946 0.84986 0.83189 0.82376 0.88739 0.93161 0.87308 0.86502 0.91950 0.85433 0.87256 0.75484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.92 10.28 -34.34 -0.35 -3.27 16 3 C 0.09 0.95 6.69 -39.17 -0.26 0.68 16 4 C -0.18 -1.70 9.03 -39.39 -0.36 -2.05 16 5 C -0.09 -0.91 10.02 -39.65 -0.40 -1.31 16 6 C -0.14 -1.64 8.08 -39.16 -0.32 -1.95 16 7 C -0.10 -1.20 5.69 -104.93 -0.60 -1.79 16 8 C 0.21 2.46 10.51 -14.84 -0.16 2.30 16 9 N -0.54 -7.96 10.30 -60.26 -0.62 -8.58 16 10 C 0.11 1.64 5.52 -5.19 -0.03 1.61 16 11 C -0.19 -3.30 5.47 -104.57 -0.57 -3.87 16 12 C -0.08 -1.38 9.27 -39.61 -0.37 -1.75 16 13 C -0.19 -4.10 9.99 -39.39 -0.39 -4.49 16 14 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 15 O -0.18 -5.09 9.76 0.04 0.00 -5.09 16 16 C -0.39 -11.05 9.49 30.89 0.29 -10.75 16 17 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 20 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 24 C -0.23 -5.17 9.17 -39.39 -0.36 -5.54 16 25 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 26 C 0.10 1.11 6.73 -38.60 -0.26 0.85 16 27 O -0.48 -4.42 12.47 -33.69 -0.42 -4.84 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 30 H 0.06 0.26 7.66 -51.93 -0.40 -0.13 16 31 H 0.13 0.88 6.27 -52.48 -0.33 0.55 16 32 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 33 H 0.15 2.01 2.19 -52.49 -0.11 1.89 16 34 H 0.16 1.46 7.64 -52.48 -0.40 1.06 16 35 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 36 H 0.05 0.68 5.15 -51.93 -0.27 0.41 16 37 H 0.11 1.67 5.46 -52.49 -0.29 1.39 16 38 H 0.12 2.41 8.06 -52.48 -0.42 1.98 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 41 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.39 1.87 9.06 45.56 0.41 2.29 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -34.17 355.30 -7.42 -41.59 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -3.60 Total: 7.55 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -3.52 Total: -23.70 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.14 Total: -33.22 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.77 Total: -13.20 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.17 -7.42 -41.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255123367.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.288 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds