Wall clock time and date at job start Tue Mar 31 2020 14:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99853 * 2 1 4 4 C 1.52997 * 109.46977 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47141 * 180.02562 * 4 3 2 6 6 C 1.38234 * 120.00257 * 89.99840 * 5 4 3 7 7 C 1.38230 * 119.99864 * 179.97438 * 6 5 4 8 8 C 1.38235 * 120.00326 * 0.02562 * 7 6 5 9 9 S 1.76199 * 120.00342 * 179.70391 * 8 7 6 10 10 O 1.42099 * 106.40466 * 203.54194 * 9 8 7 11 11 O 1.42098 * 106.40181 * 336.46004 * 9 8 7 12 12 N 1.65602 * 107.21888 * 89.99875 * 9 8 7 13 13 C 1.46500 * 119.99756 * 65.00258 * 12 9 8 14 14 C 1.52998 * 109.46901 * 164.99878 * 13 12 9 15 15 C 1.53002 * 109.47175 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47111 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99673 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99993 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99813 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00018 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46753 * 60.00024 * 20 18 16 22 22 H 1.48498 * 109.47149 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47095 * 300.00323 * 20 18 16 24 24 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 25 25 C 1.38234 * 119.99499 * 270.02358 * 5 4 3 26 26 H 1.08995 * 109.47109 * 60.00003 * 1 2 3 27 27 H 1.09002 * 109.46579 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47058 * 299.99756 * 1 2 3 29 29 H 1.09001 * 109.47190 * 60.00158 * 3 2 1 30 30 H 1.08996 * 109.46972 * 300.00120 * 3 2 1 31 31 H 1.09001 * 109.47096 * 60.00021 * 4 3 2 32 32 H 1.09005 * 109.47051 * 299.99818 * 4 3 2 33 33 H 1.08002 * 119.99744 * 359.97438 * 6 5 4 34 34 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 35 35 H 0.97000 * 119.99945 * 245.00458 * 12 9 8 36 36 H 1.09000 * 109.47104 * 284.99861 * 13 12 9 37 37 H 1.08996 * 109.47400 * 45.00315 * 13 12 9 38 38 H 1.09000 * 109.47228 * 299.99907 * 14 13 12 39 39 H 1.09003 * 109.47349 * 59.99837 * 14 13 12 40 40 H 1.09000 * 109.47117 * 300.00158 * 15 14 13 41 41 H 1.08996 * 109.47114 * 60.00445 * 15 14 13 42 42 H 0.97003 * 119.99749 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.00299 * 179.97438 * 24 8 7 44 44 H 1.07997 * 120.00459 * 359.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1484 2.5614 0.0000 6 6 4.4300 3.1922 1.1974 7 6 4.9927 4.4547 1.1979 8 6 5.2734 5.0869 0.0010 9 16 5.9835 6.6995 0.0016 10 8 5.6491 7.2857 -1.2489 11 8 5.6447 7.2866 1.2505 12 7 7.6287 6.5106 0.0047 13 6 8.2973 5.8940 -1.1438 14 6 9.8002 6.1706 -1.0679 15 6 10.4986 5.5261 -2.2669 16 6 11.9790 5.7980 -2.1918 17 1 12.3813 6.3734 -1.3711 18 6 12.8195 5.3132 -3.1713 19 7 12.3293 4.6138 -4.1714 20 14 14.6544 5.6509 -3.0785 21 1 15.2001 5.0783 -1.8217 22 1 15.3323 5.0252 -4.2422 23 1 14.8895 7.1170 -3.0975 24 6 4.9918 4.4562 -1.1964 25 6 4.4286 3.1937 -1.1969 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8567 0.6439 -0.8909 32 1 3.8574 0.6436 0.8892 33 1 4.2103 2.6984 2.1325 34 1 5.2123 4.9478 2.1333 35 1 8.1496 6.8083 0.7669 36 1 8.1248 4.8178 -1.1299 37 1 7.8967 6.3143 -2.0662 38 1 9.9727 7.2468 -1.0818 39 1 10.2009 5.7503 -0.1454 40 1 10.3260 4.4499 -2.2526 41 1 10.0981 5.9460 -3.1896 42 1 12.9207 4.2724 -4.8603 43 1 5.2107 4.9501 -2.1315 44 1 4.2086 2.7010 -2.1324 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264146196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:57 Heat of formation + Delta-G solvation = -117.598707 kcal Electronic energy + Delta-G solvation = -24745.989185 eV Core-core repulsion = 20982.666197 eV Total energy + Delta-G solvation = -3763.322988 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.79824 -38.22398 -37.23492 -35.99403 -35.82367 -33.99886 -33.24655 -31.32212 -30.87198 -29.60103 -26.78961 -26.40183 -24.12487 -23.22870 -22.94705 -21.64258 -20.59759 -19.39717 -18.10264 -17.25553 -16.98173 -16.69512 -16.48438 -15.93611 -15.68156 -15.32236 -15.28896 -14.78077 -14.52130 -14.44783 -14.26097 -13.86783 -13.49940 -13.40967 -12.57890 -12.47604 -12.35568 -12.24690 -12.17171 -12.04894 -11.97331 -11.91726 -11.63844 -11.56035 -11.36236 -10.95572 -10.86617 -10.76394 -10.58417 -10.13858 -9.93834 -9.50258 -9.43532 -9.30161 -9.26015 -9.11578 -8.38010 -6.03295 -4.05929 0.33297 0.60970 1.05197 2.91767 3.21185 3.31838 3.36445 3.38721 3.39734 3.77963 4.24197 4.42833 4.44790 4.47729 4.63199 4.68387 4.71107 4.90627 4.95406 4.97600 5.04229 5.14035 5.22652 5.32627 5.33263 5.38706 5.42821 5.58114 5.64622 5.69352 5.82970 5.88027 5.92840 6.07443 6.15626 6.55476 6.56718 6.66442 6.74801 6.94171 7.13821 7.61241 7.74102 7.95402 8.37194 9.00368 9.58283 11.07957 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.002450 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.502676 B =11423.769033 C =12967.591587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.066 3.934 4 C -0.087 4.087 5 C -0.032 4.032 6 C -0.138 4.138 7 C -0.016 4.016 8 C -0.675 4.675 9 S 2.694 3.306 10 O -0.957 6.957 11 O -0.967 6.967 12 N -1.113 6.113 13 C 0.112 3.888 14 C -0.116 4.116 15 C 0.022 3.978 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.015 4.015 25 C -0.135 4.135 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.132 0.868 34 H 0.141 0.859 35 H 0.418 0.582 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.018 0.982 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.144 0.856 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.528 -6.287 10.224 25.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.010 4.010 4 C -0.124 4.124 5 C -0.032 4.032 6 C -0.157 4.157 7 C -0.036 4.036 8 C -0.762 4.762 9 S 2.783 3.217 10 O -0.947 6.947 11 O -0.958 6.958 12 N -0.874 5.874 13 C -0.013 4.013 14 C -0.155 4.155 15 C -0.016 4.016 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.034 4.034 25 C -0.154 4.154 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.252 0.748 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.162 0.838 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.943 -5.835 9.885 25.654 hybrid contribution 1.075 -0.377 0.287 1.174 sum -21.868 -6.211 10.172 24.905 Atomic orbital electron populations 1.22756 0.80679 1.02909 1.00136 1.87860 1.19984 1.27848 1.95484 1.22480 0.92960 0.84756 1.00823 1.20587 0.93343 0.93410 1.05054 1.20004 0.94735 0.94906 0.93576 1.21171 1.01124 0.95485 0.97899 1.20908 0.92172 0.93836 0.96657 1.31062 1.19088 1.26540 0.99484 1.01818 0.72619 0.73688 0.73526 1.93591 1.82941 1.74059 1.44080 1.93568 1.82878 1.75321 1.43997 1.55483 1.25076 1.77747 1.29080 1.21611 0.96318 0.96762 0.86577 1.21852 0.90447 1.01401 1.01795 1.19076 0.94799 0.95916 0.91849 1.21175 0.92354 1.33887 1.08643 0.92654 1.25025 0.98865 0.95175 0.95407 1.69948 1.35329 1.36078 1.12023 0.86637 0.85249 0.78531 0.77442 1.20274 1.21301 1.20222 1.21019 0.91605 0.93873 0.96883 1.21224 1.00684 0.95422 0.98023 0.93928 0.89453 0.93982 0.92932 0.92845 0.89355 0.89501 0.85037 0.84163 0.74756 0.92124 0.90476 0.92329 0.92572 0.96325 0.96157 0.92889 0.83817 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.41 10.70 -35.23 -0.38 -3.78 16 3 C 0.07 0.50 5.92 37.16 0.22 0.72 16 4 C -0.09 -0.66 5.71 -27.88 -0.16 -0.82 16 5 C -0.03 -0.29 5.13 -104.62 -0.54 -0.83 16 6 C -0.14 -1.28 9.70 -39.59 -0.38 -1.66 16 7 C -0.02 -0.18 9.52 -39.59 -0.38 -0.55 16 8 C -0.68 -8.09 5.95 -39.58 -0.24 -8.32 16 9 S 2.69 36.15 5.74 -107.50 -0.62 35.53 16 10 O -0.96 -15.54 16.75 -57.17 -0.96 -16.49 16 11 O -0.97 -14.49 17.28 -57.17 -0.99 -15.48 16 12 N -1.11 -14.63 6.00 -10.62 -0.06 -14.70 16 13 C 0.11 1.76 6.22 -4.04 -0.03 1.73 16 14 C -0.12 -2.20 5.29 -26.73 -0.14 -2.34 16 15 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 16 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 17 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 20 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.01 -0.17 9.52 -39.58 -0.38 -0.54 16 25 C -0.13 -1.33 9.70 -39.58 -0.38 -1.72 16 26 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.09 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.14 1.29 7.62 -52.49 -0.40 0.89 16 35 H 0.42 4.77 8.65 -34.47 -0.30 4.47 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.23 7.75 -51.93 -0.40 0.82 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.14 1.55 7.62 -52.49 -0.40 1.16 16 44 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 385.25 15.07 5.81 5.81 Total: -1.00 -34.39 385.25 -10.27 -44.67 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.95 Total: -0.38 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -1.84 Total: -25.85 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.67 Total: -40.34 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -2.32 Total: -35.76 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 36.15 SS G_CDS: -0.62 Total: 35.53 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.39 -10.27 -44.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264146196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.930 kcal (2) G-P(sol) polarization free energy of solvation -34.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds