Wall clock time and date at job start Tue Mar 31 2020 14:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 113.99662 * 2 1 4 4 H 1.09000 * 109.47484 * 30.00173 * 3 2 1 5 5 C 1.53009 * 109.46923 * 149.99884 * 3 2 1 6 6 S 1.81397 * 109.47235 * 299.99996 * 5 3 2 7 7 O 1.42105 * 110.54275 * 68.37271 * 6 5 3 8 8 O 1.42101 * 110.54298 * 291.62373 * 6 5 3 9 9 N 1.65599 * 104.44825 * 179.97438 * 6 5 3 10 10 C 1.46497 * 120.00110 * 65.00280 * 9 6 5 11 11 C 1.52997 * 109.47242 * 164.99451 * 10 9 6 12 12 C 1.53001 * 109.46855 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47072 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99634 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00152 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00404 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99939 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47233 * 60.00282 * 17 15 13 19 19 H 1.48502 * 109.47003 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47433 * 300.00301 * 17 15 13 21 21 C 1.50697 * 109.47457 * 269.99755 * 3 2 1 22 22 C 1.38236 * 119.99798 * 324.73552 * 21 3 2 23 23 C 1.38240 * 119.99986 * 179.78745 * 22 21 3 24 24 C 1.38237 * 119.99880 * 0.43454 * 23 22 21 25 25 C 1.38238 * 119.99986 * 359.81657 * 24 23 22 26 26 C 1.38235 * 120.00143 * 359.97428 * 25 24 23 27 27 H 1.08997 * 109.46772 * 59.99788 * 1 2 3 28 28 H 1.08995 * 109.46926 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47013 * 300.00173 * 1 2 3 30 30 H 1.09004 * 109.47149 * 180.02562 * 5 3 2 31 31 H 1.09000 * 109.46805 * 59.99873 * 5 3 2 32 32 H 0.96999 * 120.00046 * 244.99555 * 9 6 5 33 33 H 1.09002 * 109.47077 * 285.00304 * 10 9 6 34 34 H 1.09005 * 109.47050 * 44.99641 * 10 9 6 35 35 H 1.08992 * 109.47454 * 299.99944 * 11 10 9 36 36 H 1.09005 * 109.46944 * 60.00124 * 11 10 9 37 37 H 1.09004 * 109.47525 * 300.00026 * 12 11 10 38 38 H 1.08996 * 109.47383 * 60.00187 * 12 11 10 39 39 H 0.96994 * 120.00386 * 179.97438 * 16 15 13 40 40 H 1.07994 * 120.00360 * 359.97438 * 22 21 3 41 41 H 1.07994 * 120.00042 * 180.27051 * 23 22 21 42 42 H 1.07996 * 120.00318 * 179.83150 * 24 23 22 43 43 H 1.08003 * 120.00442 * 179.97438 * 25 24 23 44 44 H 1.07992 * 120.00432 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3589 1.2633 0.7213 6 16 3.1130 0.7109 2.4315 7 8 2.7176 -0.6537 2.4628 8 8 2.4092 1.6948 3.1770 9 7 4.6333 0.7102 3.0882 10 6 5.3647 1.9699 3.2435 11 6 6.5476 1.7595 4.1907 12 6 7.3118 3.0751 4.3523 13 6 8.4773 2.8676 5.2849 14 1 8.6549 1.8948 5.7192 15 6 9.3169 3.9197 5.5836 16 7 9.1010 5.1041 5.0544 17 14 10.7612 3.6627 6.7401 18 1 11.6673 2.6290 6.1784 19 1 11.5038 4.9392 6.8959 20 1 10.2611 3.2154 8.0649 21 6 2.2146 1.7644 -1.4208 22 6 2.5650 0.8519 -2.3982 23 6 2.7482 1.2721 -3.7024 24 6 2.5897 2.6064 -4.0273 25 6 2.2444 3.5198 -3.0488 26 6 2.0570 3.0989 -1.7455 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 3.8021 2.2592 0.7217 31 1 4.0242 0.5694 0.2075 32 1 5.0394 -0.1244 3.3701 33 1 5.7317 2.2992 2.2713 34 1 4.6991 2.7280 3.6563 35 1 6.1806 1.4303 5.1628 36 1 7.2132 1.0014 3.7779 37 1 7.6789 3.4039 3.3801 38 1 6.6465 3.8335 4.7649 39 1 9.6915 5.8443 5.2649 40 1 2.6927 -0.1898 -2.1436 41 1 3.0177 0.5585 -4.4668 42 1 2.7355 2.9352 -5.0456 43 1 2.1210 4.5623 -3.3025 44 1 1.7868 3.8123 -0.9812 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295613844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:32 Heat of formation + Delta-G solvation = -105.432079 kcal Electronic energy + Delta-G solvation = -25361.528160 eV Core-core repulsion = 21598.732756 eV Total energy + Delta-G solvation = -3762.795403 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.04482 -38.03037 -37.03097 -36.01747 -35.81058 -33.30480 -33.21925 -31.19112 -30.86056 -30.04571 -26.88908 -26.38782 -24.48128 -23.00870 -22.85580 -21.38161 -20.55120 -19.18751 -17.92945 -17.22946 -17.08424 -16.67211 -16.43994 -15.86248 -15.74267 -15.24763 -14.82312 -14.73075 -14.63715 -14.51945 -14.39033 -13.67059 -13.45586 -13.23802 -13.06147 -12.51912 -12.34521 -12.27563 -12.09943 -11.99360 -11.88625 -11.77404 -11.66819 -11.52756 -11.21631 -10.96242 -10.89743 -10.75837 -10.57622 -10.15200 -9.91296 -9.46338 -9.27037 -9.22054 -9.14208 -9.03512 -8.37875 -6.03213 -4.05840 0.25333 0.99017 1.10565 2.79732 3.17400 3.32128 3.36608 3.39113 3.41753 3.78687 4.18190 4.30179 4.43050 4.44138 4.46347 4.70311 4.72714 4.84866 4.93887 5.03652 5.07895 5.19897 5.29309 5.31601 5.32884 5.40509 5.46466 5.62496 5.63404 5.73805 5.90565 6.07453 6.13938 6.18017 6.21624 6.55923 6.67413 6.69257 6.75648 6.95565 7.17194 7.61250 7.74197 7.95526 8.37536 9.00508 9.58477 11.08106 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014830 B = 0.002611 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.641229 B =10723.096554 C =12030.395043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.374 6.374 3 C 0.142 3.858 4 H 0.086 0.914 5 C -0.632 4.632 6 S 2.615 3.385 7 O -0.948 6.948 8 O -0.957 6.957 9 N -1.117 6.117 10 C 0.108 3.892 11 C -0.116 4.116 12 C 0.021 3.979 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.107 4.107 22 C -0.093 4.093 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.110 4.110 27 H 0.047 0.953 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.417 0.583 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.018 0.982 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.223 -7.122 -18.034 25.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.292 6.292 3 C 0.082 3.918 4 H 0.104 0.896 5 C -0.759 4.759 6 S 2.706 3.294 7 O -0.938 6.938 8 O -0.947 6.947 9 N -0.878 5.878 10 C -0.017 4.017 11 C -0.155 4.155 12 C -0.017 4.017 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.108 4.108 22 C -0.111 4.111 23 C -0.141 4.141 24 C -0.135 4.135 25 C -0.138 4.138 26 C -0.129 4.129 27 H 0.066 0.934 28 H 0.114 0.886 29 H 0.066 0.934 30 H 0.165 0.835 31 H 0.162 0.838 32 H 0.251 0.749 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.148 0.852 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.925 -7.161 -17.652 26.157 hybrid contribution 1.430 0.153 0.071 1.440 sum -16.495 -7.009 -17.581 25.106 Atomic orbital electron populations 1.22945 0.79964 1.03749 1.00509 1.88039 1.20714 1.25623 1.94844 1.20479 0.92100 0.86208 0.93008 0.89639 1.30834 1.04770 1.14501 1.25753 1.04825 0.73534 0.74613 0.76463 1.93595 1.80654 1.33118 1.86435 1.93606 1.71290 1.63064 1.66745 1.55609 1.37679 1.16198 1.78273 1.21625 0.95652 0.83754 1.00651 1.21842 0.94385 1.01876 0.97399 1.19080 0.94574 0.90743 0.97271 1.21183 1.11173 0.96014 1.27716 0.92648 1.25018 0.97921 0.95223 0.96258 1.69943 1.38494 1.00878 1.44130 0.86640 0.82497 0.77325 0.81423 1.20259 1.21290 1.20208 1.20103 1.01582 0.94115 0.95026 1.21035 0.97612 1.00051 0.92436 1.21197 1.00386 0.96064 0.96452 1.21226 0.99306 0.93512 0.99468 1.21144 0.99948 0.99791 0.92964 1.21079 0.99874 0.94953 0.96952 0.93445 0.88640 0.93392 0.83502 0.83797 0.74859 0.92246 0.90504 0.92336 0.92559 0.96322 0.96175 0.92885 0.85244 0.85894 0.86020 0.85767 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.81 101.05 1.09 1.30 16 2 O -0.37 -4.13 8.54 -41.98 -0.36 -4.49 16 3 C 0.14 1.45 2.37 -27.88 -0.07 1.39 16 4 H 0.09 0.77 7.70 -51.93 -0.40 0.37 16 5 C -0.63 -6.45 5.78 37.16 0.21 -6.23 16 6 S 2.61 34.77 5.25 -107.50 -0.56 34.21 16 7 O -0.95 -14.80 17.41 -61.89 -1.08 -15.87 16 8 O -0.96 -15.64 17.50 -57.54 -1.01 -16.64 16 9 N -1.12 -15.05 5.89 -10.61 -0.06 -15.11 16 10 C 0.11 1.70 6.13 -4.04 -0.02 1.67 16 11 C -0.12 -2.23 5.29 -26.73 -0.14 -2.37 16 12 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 13 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 14 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.45 13.29 55.43 0.74 -25.72 16 17 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C -0.11 -1.05 4.96 -104.62 -0.52 -1.57 16 22 C -0.09 -0.88 9.35 -39.58 -0.37 -1.26 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 24 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 25 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 26 C -0.11 -0.99 9.68 -39.58 -0.38 -1.37 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.15 1.27 8.14 -51.92 -0.42 0.84 16 31 H 0.14 1.30 8.14 -51.92 -0.42 0.87 16 32 H 0.42 5.10 8.62 -34.47 -0.30 4.80 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.24 7.70 -51.93 -0.40 0.84 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.13 1.18 7.64 -52.49 -0.40 0.78 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 44 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 384.08 15.07 5.79 5.79 Total: -1.00 -35.04 384.08 -10.46 -45.50 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.95 Total: 1.41 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -1.94 Total: -25.45 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.67 Total: -40.83 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -2.44 Total: -37.01 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 34.77 SS G_CDS: -0.56 Total: 34.21 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.04 -10.46 -45.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295613844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.935 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds