Wall clock time and date at job start Tue Mar 31 2020 14:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 113.99662 * 2 1 4 4 H 1.09000 * 109.47484 * 30.00173 * 3 2 1 5 5 C 1.53009 * 109.46923 * 149.99884 * 3 2 1 6 6 S 1.81397 * 109.47235 * 299.99996 * 5 3 2 7 7 O 1.42105 * 110.54275 * 68.37271 * 6 5 3 8 8 O 1.42101 * 110.54298 * 291.62373 * 6 5 3 9 9 N 1.65599 * 104.44825 * 179.97438 * 6 5 3 10 10 C 1.46497 * 120.00110 * 65.00280 * 9 6 5 11 11 C 1.52997 * 109.47242 * 164.99451 * 10 9 6 12 12 C 1.53001 * 109.46855 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47072 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99634 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00152 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00404 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99939 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47233 * 60.00282 * 17 15 13 19 19 H 1.48502 * 109.47003 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47433 * 300.00301 * 17 15 13 21 21 C 1.50697 * 109.47457 * 269.99755 * 3 2 1 22 22 C 1.38236 * 119.99798 * 324.73552 * 21 3 2 23 23 C 1.38240 * 119.99986 * 179.78745 * 22 21 3 24 24 C 1.38237 * 119.99880 * 0.43454 * 23 22 21 25 25 C 1.38238 * 119.99986 * 359.81657 * 24 23 22 26 26 C 1.38235 * 120.00143 * 359.97428 * 25 24 23 27 27 H 1.08997 * 109.46772 * 59.99788 * 1 2 3 28 28 H 1.08995 * 109.46926 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47013 * 300.00173 * 1 2 3 30 30 H 1.09004 * 109.47149 * 180.02562 * 5 3 2 31 31 H 1.09000 * 109.46805 * 59.99873 * 5 3 2 32 32 H 0.96999 * 120.00046 * 244.99555 * 9 6 5 33 33 H 1.09002 * 109.47077 * 285.00304 * 10 9 6 34 34 H 1.09005 * 109.47050 * 44.99641 * 10 9 6 35 35 H 1.08992 * 109.47454 * 299.99944 * 11 10 9 36 36 H 1.09005 * 109.46944 * 60.00124 * 11 10 9 37 37 H 1.09004 * 109.47525 * 300.00026 * 12 11 10 38 38 H 1.08996 * 109.47383 * 60.00187 * 12 11 10 39 39 H 0.96994 * 120.00386 * 179.97438 * 16 15 13 40 40 H 1.07994 * 120.00360 * 359.97438 * 22 21 3 41 41 H 1.07994 * 120.00042 * 180.27051 * 23 22 21 42 42 H 1.07996 * 120.00318 * 179.83150 * 24 23 22 43 43 H 1.08003 * 120.00442 * 179.97438 * 25 24 23 44 44 H 1.07992 * 120.00432 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3589 1.2633 0.7213 6 16 3.1130 0.7109 2.4315 7 8 2.7176 -0.6537 2.4628 8 8 2.4092 1.6948 3.1770 9 7 4.6333 0.7102 3.0882 10 6 5.3647 1.9699 3.2435 11 6 6.5476 1.7595 4.1907 12 6 7.3118 3.0751 4.3523 13 6 8.4773 2.8676 5.2849 14 1 8.6549 1.8948 5.7192 15 6 9.3169 3.9197 5.5836 16 7 9.1010 5.1041 5.0544 17 14 10.7612 3.6627 6.7401 18 1 11.6673 2.6290 6.1784 19 1 11.5038 4.9392 6.8959 20 1 10.2611 3.2154 8.0649 21 6 2.2146 1.7644 -1.4208 22 6 2.5650 0.8519 -2.3982 23 6 2.7482 1.2721 -3.7024 24 6 2.5897 2.6064 -4.0273 25 6 2.2444 3.5198 -3.0488 26 6 2.0570 3.0989 -1.7455 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 3.8021 2.2592 0.7217 31 1 4.0242 0.5694 0.2075 32 1 5.0394 -0.1244 3.3701 33 1 5.7317 2.2992 2.2713 34 1 4.6991 2.7280 3.6563 35 1 6.1806 1.4303 5.1628 36 1 7.2132 1.0014 3.7779 37 1 7.6789 3.4039 3.3801 38 1 6.6465 3.8335 4.7649 39 1 9.6915 5.8443 5.2649 40 1 2.6927 -0.1898 -2.1436 41 1 3.0177 0.5585 -4.4668 42 1 2.7355 2.9352 -5.0456 43 1 2.1210 4.5623 -3.3025 44 1 1.7868 3.8123 -0.9812 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295613844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:31 Heat of formation + Delta-G solvation = -129.120283 kcal Electronic energy + Delta-G solvation = -25362.555357 eV Core-core repulsion = 21598.732756 eV Total energy + Delta-G solvation = -3763.822601 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.71485 -38.72456 -38.20462 -37.37359 -37.00676 -35.15437 -34.01029 -32.61808 -31.80036 -30.75751 -28.18302 -27.57287 -25.21500 -24.75467 -23.47191 -22.28321 -21.96795 -20.31246 -18.83354 -18.54901 -18.08895 -17.88125 -17.48886 -17.04146 -16.54275 -16.45951 -16.05643 -16.01471 -15.64029 -15.45906 -15.38161 -14.33553 -14.26328 -14.19058 -14.06265 -13.93587 -13.76274 -13.67577 -13.19946 -13.15843 -13.10193 -12.93379 -12.75375 -12.52042 -12.44316 -12.35238 -12.31988 -11.88937 -11.82026 -11.65121 -11.37775 -11.14439 -10.88620 -10.51851 -10.37250 -9.84577 -9.73464 -8.17826 -6.27884 -0.79174 0.34909 0.47971 1.42365 1.44541 1.52306 1.72298 2.43032 2.44694 2.69162 2.85854 3.15974 3.22912 3.56080 3.64521 3.72266 4.04151 4.04376 4.13939 4.17494 4.28016 4.29690 4.39418 4.46269 4.50263 4.60994 4.66761 4.70216 4.72308 4.81682 5.00132 5.02465 5.14338 5.20656 5.24299 5.52443 5.54645 5.55608 5.60963 5.77789 5.88441 5.98547 6.07367 6.08383 6.27743 6.88897 7.41030 8.93632 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014830 B = 0.002611 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.641229 B =10723.096554 C =12030.395043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.392 6.392 3 C 0.134 3.866 4 H 0.093 0.907 5 C -0.614 4.614 6 S 2.623 3.377 7 O -0.973 6.973 8 O -0.993 6.993 9 N -1.115 6.115 10 C 0.115 3.885 11 C -0.106 4.106 12 C 0.022 3.978 13 C -0.544 4.544 14 H 0.060 0.940 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.961 3.039 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.270 1.270 21 C -0.117 4.117 22 C -0.107 4.107 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.122 4.122 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.049 0.951 30 H 0.167 0.833 31 H 0.160 0.840 32 H 0.423 0.577 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.004 0.996 38 H -0.005 1.005 39 H 0.263 0.737 40 H 0.127 0.873 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.870 -7.498 -19.269 26.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.311 6.311 3 C 0.075 3.925 4 H 0.111 0.889 5 C -0.744 4.744 6 S 2.718 3.282 7 O -0.964 6.964 8 O -0.983 6.983 9 N -0.875 5.875 10 C -0.011 4.011 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.582 4.582 14 H 0.078 0.922 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.786 3.214 18 H -0.191 1.191 19 H -0.210 1.210 20 H -0.195 1.195 21 C -0.118 4.118 22 C -0.125 4.125 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.145 4.145 26 C -0.140 4.140 27 H 0.078 0.922 28 H 0.124 0.876 29 H 0.068 0.932 30 H 0.185 0.815 31 H 0.178 0.822 32 H 0.258 0.742 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.023 0.977 38 H 0.014 0.986 39 H 0.072 0.928 40 H 0.145 0.855 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.581 -7.573 -18.842 26.860 hybrid contribution 1.267 0.282 0.358 1.347 sum -16.314 -7.291 -18.484 25.709 Atomic orbital electron populations 1.23138 0.78957 1.04745 1.01218 1.88007 1.21973 1.26154 1.94982 1.20614 0.91989 0.86280 0.93651 0.88888 1.30685 1.05762 1.15894 1.22099 1.04390 0.72807 0.73567 0.77428 1.93559 1.80943 1.34489 1.87376 1.93560 1.72197 1.63622 1.68907 1.55414 1.37351 1.15698 1.79051 1.21430 0.94304 0.84439 1.00940 1.21622 0.95410 0.99081 0.98400 1.18994 0.94050 0.92884 0.95708 1.21683 1.12122 0.96287 1.28156 0.92192 1.25924 1.00889 0.94950 0.97950 1.70067 1.39753 1.01737 1.45610 0.85560 0.79028 0.77488 0.79321 1.19146 1.20951 1.19487 1.20078 1.02547 0.94586 0.94594 1.21143 0.98257 1.00034 0.93073 1.21459 0.99994 0.96809 0.96437 1.21551 0.98496 0.93323 1.00541 1.21446 0.99419 1.00905 0.92729 1.21305 1.00012 0.94913 0.97792 0.92244 0.87620 0.93193 0.81541 0.82183 0.74154 0.89831 0.91307 0.92778 0.91372 0.97739 0.98633 0.92783 0.85483 0.84212 0.83921 0.83972 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.81 113.37 1.23 1.47 16 2 O -0.39 -8.36 8.54 -142.53 -1.22 -9.58 16 3 C 0.13 2.59 2.37 29.85 0.07 2.66 16 4 H 0.09 1.60 7.70 -2.39 -0.02 1.58 16 5 C -0.61 -11.52 5.78 71.99 0.42 -11.10 16 6 S 2.62 68.07 5.25 -56.49 -0.30 67.77 16 7 O -0.97 -30.08 17.41 -123.49 -2.15 -32.23 16 8 O -0.99 -32.41 17.50 -127.65 -2.23 -34.65 16 9 N -1.11 -28.90 5.89 -187.49 -1.10 -30.01 16 10 C 0.11 3.48 6.13 86.38 0.53 4.01 16 11 C -0.11 -4.02 5.29 30.59 0.16 -3.86 16 12 C 0.02 1.08 4.97 29.85 0.15 1.23 16 13 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 14 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 15 C 0.00 0.05 5.46 84.65 0.46 0.51 16 16 N -0.93 -55.59 13.29 21.45 0.28 -55.31 16 17 Si 0.96 43.67 29.54 68.60 2.03 45.69 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 C -0.12 -2.11 4.96 -19.87 -0.10 -2.21 16 22 C -0.11 -1.88 9.35 22.27 0.21 -1.67 16 23 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 24 C -0.12 -1.64 10.05 22.27 0.22 -1.42 16 25 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 26 C -0.12 -1.98 9.68 22.27 0.22 -1.77 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 28 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 0.77 8.08 -2.39 -0.02 0.75 16 30 H 0.17 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.16 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.42 9.90 8.62 -96.75 -0.83 9.06 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.07 2.21 7.70 -2.38 -0.02 2.19 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.06 16 36 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 37 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 40 H 0.13 2.21 7.64 -2.91 -0.02 2.19 16 41 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 43 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 44 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -74.89 384.08 -0.30 -75.19 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.15 Total: 18.54 kcal Atomic # 6 Polarization: -49.67 SS G_CDS: 4.24 Total: -45.43 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -0.82 Total: -85.32 kcal Atomic # 8 Polarization: -70.85 SS G_CDS: -5.60 Total: -76.46 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 68.07 SS G_CDS: -0.30 Total: 67.77 kcal Total: -74.89 -0.30 -75.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295613844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.929 kcal (2) G-P(sol) polarization free energy of solvation -74.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds