Wall clock time and date at job start Tue Mar 31 2020 14:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35668 * 116.99503 * 2 1 4 4 C 1.38533 * 120.12678 * 359.97438 * 3 2 1 5 5 C 1.38244 * 120.24241 * 179.70270 * 4 3 2 6 6 C 1.38253 * 120.48172 * 0.04723 * 5 4 3 7 7 C 1.38539 * 120.23833 * 359.97438 * 6 5 4 8 8 O 1.35661 * 120.11819 * 179.97438 * 7 6 5 9 9 C 1.42899 * 117.00372 * 0.02562 * 8 7 6 10 10 C 1.40264 * 120.11489 * 179.72195 * 3 2 1 11 11 C 1.47205 * 120.24067 * 0.27722 * 10 3 2 12 12 O 1.21635 * 120.00619 * 89.99691 * 11 10 3 13 13 N 1.34783 * 120.00012 * 269.99858 * 11 10 3 14 14 C 1.39865 * 120.00346 * 174.89500 * 13 11 10 15 15 C 1.39301 * 119.95491 * 145.77357 * 14 13 11 16 16 C 1.38475 * 120.43241 * 179.97438 * 15 14 13 17 17 C 1.37684 * 120.32265 * 359.97438 * 16 15 14 18 18 C 1.40747 * 119.88751 * 0.02586 * 17 16 15 19 19 C 1.41413 * 120.20694 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00054 * 205.17556 * 19 18 17 21 21 C 1.39928 * 120.00114 * 25.18277 * 19 18 17 22 22 N 1.30835 * 119.99658 * 16.79626 * 21 19 18 23 23 Si 1.86802 * 120.00122 * 196.80052 * 21 19 18 24 24 H 1.48502 * 109.46757 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47233 * 119.99789 * 23 21 19 26 26 H 1.48506 * 109.46803 * 239.99712 * 23 21 19 27 27 C 1.38261 * 119.94317 * 325.49945 * 14 13 11 28 28 H 1.09006 * 109.47193 * 60.00121 * 1 2 3 29 29 H 1.08999 * 109.47041 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47567 * 300.00298 * 1 2 3 31 31 H 1.08007 * 119.87906 * 359.73057 * 4 3 2 32 32 H 1.08001 * 119.75789 * 180.02562 * 5 4 3 33 33 H 1.08005 * 119.87607 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.46630 * 299.99437 * 9 8 7 35 35 H 1.08992 * 109.46872 * 59.99355 * 9 8 7 36 36 H 1.09002 * 109.46859 * 179.97438 * 9 8 7 37 37 H 0.97003 * 119.99746 * 354.89148 * 13 11 10 38 38 H 1.08005 * 119.78047 * 359.97438 * 15 14 13 39 39 H 1.08001 * 119.84212 * 180.02562 * 16 15 14 40 40 H 1.08000 * 120.05566 * 180.02562 * 17 16 15 41 41 H 0.97005 * 119.99621 * 180.02562 * 22 21 19 42 42 H 1.08000 * 120.16837 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 1.2928 2.3723 -0.0005 5 6 1.9178 3.6054 0.0057 6 6 3.2975 3.6922 0.0115 7 6 4.0691 2.5415 0.0117 8 8 5.4228 2.6296 0.0168 9 6 5.9876 3.9422 0.0225 10 6 3.4453 1.2852 0.0059 11 6 4.2548 0.0557 0.0059 12 8 4.5936 -0.4496 -1.0473 13 7 4.6207 -0.5102 1.1732 14 6 5.2975 -1.7342 1.1752 15 6 6.2617 -1.9942 2.1464 16 6 6.9374 -3.2029 2.1580 17 6 6.6629 -4.1619 1.2090 18 6 5.6912 -3.9134 0.2215 19 6 5.4043 -4.8934 -0.7568 20 1 4.9986 -4.5989 -1.7134 21 6 5.6457 -6.2447 -0.4854 22 7 5.8174 -6.6434 0.7489 23 14 5.7230 -7.4793 -1.8851 24 1 5.4973 -6.7794 -3.1753 25 1 7.0588 -8.1276 -1.9002 26 1 4.6735 -8.5122 -1.6925 27 6 5.0045 -2.6864 0.2166 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2142 2.3158 -0.0054 32 1 1.3238 4.5074 0.0056 33 1 3.7756 4.6607 0.0159 34 1 5.6625 4.4814 -0.8673 35 1 5.6558 4.4766 0.9126 36 1 7.0752 3.8698 0.0267 37 1 4.4147 -0.0685 2.0119 38 1 6.4837 -1.2483 2.8952 39 1 7.6829 -3.3946 2.9156 40 1 7.1922 -5.1032 1.2223 41 1 5.9852 -7.5801 0.9370 42 1 4.2543 -2.4875 -0.5344 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313458677.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:04 Heat of formation + Delta-G solvation = -53.625331 kcal Electronic energy + Delta-G solvation = -27217.178687 eV Core-core repulsion = 23321.185841 eV Total energy + Delta-G solvation = -3895.992845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.86289 -39.20567 -39.04887 -36.96882 -36.47073 -34.25618 -32.90182 -31.48152 -29.77288 -29.70355 -28.00584 -28.00222 -26.88007 -25.19185 -23.98772 -21.92534 -21.44348 -20.73200 -19.74822 -18.70463 -17.69101 -17.02931 -16.95598 -16.55723 -16.11828 -15.66881 -15.41636 -15.24061 -14.97057 -14.87222 -14.49218 -14.03445 -13.71988 -13.22810 -12.96547 -12.83919 -12.75104 -12.70106 -12.23180 -11.99535 -11.70119 -11.67933 -11.54591 -11.27694 -11.06620 -11.03595 -10.92206 -10.78586 -10.36385 -10.06109 -9.54337 -9.29372 -8.97354 -8.83142 -8.59940 -8.33784 -7.32919 -6.77772 -6.60285 -4.22632 0.99954 1.23187 2.70380 2.72221 2.92939 3.15981 3.23684 3.28718 3.41425 3.47758 3.52605 3.83701 4.05193 4.53949 4.74780 4.75910 4.83395 4.91176 4.93626 4.96372 5.02778 5.08852 5.20873 5.31170 5.39684 5.55572 5.83976 5.91224 5.99999 6.16957 6.20894 6.36258 6.52255 6.93404 7.12524 7.14494 7.16446 7.20448 7.23511 7.36908 7.70324 7.86944 8.09409 8.21887 8.32316 8.41029 8.75531 8.90017 9.06263 9.11004 10.31950 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015118 B = 0.003386 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.621163 B = 8266.299306 C = 9206.116019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.299 6.299 3 C 0.201 3.799 4 C -0.250 4.250 5 C -0.027 4.027 6 C -0.251 4.251 7 C 0.198 3.802 8 O -0.302 6.302 9 C 0.028 3.972 10 C -0.191 4.191 11 C 0.577 3.423 12 O -0.508 6.508 13 N -0.657 5.657 14 C 0.155 3.845 15 C -0.260 4.260 16 C -0.093 4.093 17 C -0.173 4.173 18 C 0.120 3.880 19 C -0.458 4.458 20 H 0.078 0.922 21 C 0.076 3.924 22 N -0.797 5.797 23 Si 0.906 3.094 24 H -0.260 1.260 25 H -0.273 1.273 26 H -0.276 1.276 27 C -0.207 4.207 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.103 0.897 37 H 0.397 0.603 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.278 0.722 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.349 19.647 1.929 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.211 6.211 3 C 0.153 3.847 4 C -0.269 4.269 5 C -0.046 4.046 6 C -0.270 4.270 7 C 0.151 3.849 8 O -0.214 6.214 9 C -0.067 4.067 10 C -0.196 4.196 11 C 0.362 3.638 12 O -0.382 6.382 13 N -0.300 5.300 14 C 0.063 3.937 15 C -0.281 4.281 16 C -0.112 4.112 17 C -0.192 4.192 18 C 0.117 3.883 19 C -0.488 4.488 20 H 0.096 0.904 21 C -0.141 4.141 22 N -0.423 5.423 23 Si 0.731 3.269 24 H -0.184 1.184 25 H -0.198 1.198 26 H -0.201 1.201 27 C -0.228 4.228 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.122 0.878 37 H 0.230 0.770 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.136 0.864 41 H 0.089 0.911 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.872 18.722 1.279 20.349 hybrid contribution -0.416 0.124 -0.059 0.438 sum -8.287 18.846 1.219 20.623 Atomic orbital electron populations 1.23164 0.77637 1.04641 1.01313 1.86182 1.21877 1.25928 1.87119 1.18564 0.89791 0.84957 0.91348 1.21050 1.00239 0.91770 1.13850 1.20749 0.93637 0.97069 0.93096 1.21035 0.94735 0.97214 1.14009 1.18547 0.82790 0.91857 0.91708 1.86148 1.16935 1.30987 1.87332 1.23146 0.99754 0.82429 1.01403 1.18346 0.90911 0.92746 1.17557 1.17538 0.79198 0.82780 0.84276 1.90837 1.53444 1.62791 1.31153 1.43361 1.56959 1.21632 1.08036 1.17436 0.94086 0.83738 0.98432 1.20039 1.04374 0.99510 1.04170 1.20442 0.98720 0.93677 0.98379 1.21329 1.00623 0.99301 0.97974 1.17491 0.88700 0.90698 0.91459 1.19610 1.37615 0.90556 1.01026 0.90375 1.25884 0.92449 0.99601 0.96153 1.69851 1.35380 1.17558 1.19555 0.86293 0.78492 0.79874 0.82241 1.18377 1.19776 1.20108 1.21007 1.04549 0.94973 1.02318 0.92361 0.87677 0.92352 0.84763 0.85186 0.84824 0.92342 0.92351 0.87841 0.76957 0.89362 0.89128 0.86361 0.91144 0.87572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.30 -4.63 9.95 -18.70 -0.19 -4.82 16 3 C 0.20 2.96 6.70 -38.71 -0.26 2.70 16 4 C -0.25 -2.69 9.02 -39.47 -0.36 -3.05 16 5 C -0.03 -0.25 10.02 -39.57 -0.40 -0.65 16 6 C -0.25 -2.64 9.02 -39.46 -0.36 -2.99 16 7 C 0.20 2.84 6.70 -38.71 -0.26 2.58 16 8 O -0.30 -4.39 9.95 -18.68 -0.19 -4.58 16 9 C 0.03 0.24 9.81 101.05 0.99 1.23 16 10 C -0.19 -3.25 5.65 -104.73 -0.59 -3.84 16 11 C 0.58 12.41 6.04 -12.62 -0.08 12.33 16 12 O -0.51 -13.21 14.86 5.25 0.08 -13.14 16 13 N -0.66 -13.73 5.33 -10.94 -0.06 -13.79 16 14 C 0.15 3.83 6.25 -83.79 -0.52 3.31 16 15 C -0.26 -6.13 9.97 -39.10 -0.39 -6.52 16 16 C -0.09 -2.29 10.01 -39.70 -0.40 -2.69 16 17 C -0.17 -4.74 8.69 -38.84 -0.34 -5.08 16 18 C 0.12 3.46 5.57 -106.85 -0.59 2.86 16 19 C -0.46 -13.15 9.05 -37.74 -0.34 -13.49 16 20 H 0.08 2.22 7.90 -52.49 -0.41 1.81 16 21 C 0.08 2.01 5.16 -17.34 -0.09 1.92 16 22 N -0.80 -21.45 10.94 55.55 0.61 -20.85 16 23 Si 0.91 19.77 29.59 -169.99 -5.03 14.74 16 24 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 27 C -0.21 -5.77 8.39 -38.68 -0.32 -6.10 16 28 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 31 H 0.13 1.06 6.28 -52.48 -0.33 0.73 16 32 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.13 1.01 6.28 -52.48 -0.33 0.68 16 34 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 35 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.40 6.87 8.80 -40.82 -0.36 6.51 16 38 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.09 1.96 8.06 -52.49 -0.42 1.53 16 40 H 0.12 3.31 6.17 -52.49 -0.32 2.98 16 41 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 42 H 0.11 3.08 6.48 -52.49 -0.34 2.74 16 LS Contribution 359.10 15.07 5.41 5.41 Total: -1.00 -35.63 359.10 -7.61 -43.25 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -4.94 Total: 9.99 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -3.31 Total: -16.21 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.55 Total: -34.64 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.29 Total: -22.53 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.74 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.63 -7.61 -43.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313458677.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.380 kcal (2) G-P(sol) polarization free energy of solvation -35.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds