Wall clock time and date at job start Tue Mar 31 2020 14:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35668 * 116.99503 * 2 1 4 4 C 1.38533 * 120.12678 * 359.97438 * 3 2 1 5 5 C 1.38244 * 120.24241 * 179.70270 * 4 3 2 6 6 C 1.38253 * 120.48172 * 0.04723 * 5 4 3 7 7 C 1.38539 * 120.23833 * 359.97438 * 6 5 4 8 8 O 1.35661 * 120.11819 * 179.97438 * 7 6 5 9 9 C 1.42899 * 117.00372 * 0.02562 * 8 7 6 10 10 C 1.40264 * 120.11489 * 179.72195 * 3 2 1 11 11 C 1.47205 * 120.24067 * 0.27722 * 10 3 2 12 12 O 1.21635 * 120.00619 * 89.99691 * 11 10 3 13 13 N 1.34783 * 120.00012 * 269.99858 * 11 10 3 14 14 C 1.39865 * 120.00346 * 174.89500 * 13 11 10 15 15 C 1.39301 * 119.95491 * 145.77357 * 14 13 11 16 16 C 1.38475 * 120.43241 * 179.97438 * 15 14 13 17 17 C 1.37684 * 120.32265 * 359.97438 * 16 15 14 18 18 C 1.40747 * 119.88751 * 0.02586 * 17 16 15 19 19 C 1.41413 * 120.20694 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00054 * 205.17556 * 19 18 17 21 21 C 1.39928 * 120.00114 * 25.18277 * 19 18 17 22 22 N 1.30835 * 119.99658 * 16.79626 * 21 19 18 23 23 Si 1.86802 * 120.00122 * 196.80052 * 21 19 18 24 24 H 1.48502 * 109.46757 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47233 * 119.99789 * 23 21 19 26 26 H 1.48506 * 109.46803 * 239.99712 * 23 21 19 27 27 C 1.38261 * 119.94317 * 325.49945 * 14 13 11 28 28 H 1.09006 * 109.47193 * 60.00121 * 1 2 3 29 29 H 1.08999 * 109.47041 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47567 * 300.00298 * 1 2 3 31 31 H 1.08007 * 119.87906 * 359.73057 * 4 3 2 32 32 H 1.08001 * 119.75789 * 180.02562 * 5 4 3 33 33 H 1.08005 * 119.87607 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.46630 * 299.99437 * 9 8 7 35 35 H 1.08992 * 109.46872 * 59.99355 * 9 8 7 36 36 H 1.09002 * 109.46859 * 179.97438 * 9 8 7 37 37 H 0.97003 * 119.99746 * 354.89148 * 13 11 10 38 38 H 1.08005 * 119.78047 * 359.97438 * 15 14 13 39 39 H 1.08001 * 119.84212 * 180.02562 * 16 15 14 40 40 H 1.08000 * 120.05566 * 180.02562 * 17 16 15 41 41 H 0.97005 * 119.99621 * 180.02562 * 22 21 19 42 42 H 1.08000 * 120.16837 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 1.2928 2.3723 -0.0005 5 6 1.9178 3.6054 0.0057 6 6 3.2975 3.6922 0.0115 7 6 4.0691 2.5415 0.0117 8 8 5.4228 2.6296 0.0168 9 6 5.9876 3.9422 0.0225 10 6 3.4453 1.2852 0.0059 11 6 4.2548 0.0557 0.0059 12 8 4.5936 -0.4496 -1.0473 13 7 4.6207 -0.5102 1.1732 14 6 5.2975 -1.7342 1.1752 15 6 6.2617 -1.9942 2.1464 16 6 6.9374 -3.2029 2.1580 17 6 6.6629 -4.1619 1.2090 18 6 5.6912 -3.9134 0.2215 19 6 5.4043 -4.8934 -0.7568 20 1 4.9986 -4.5989 -1.7134 21 6 5.6457 -6.2447 -0.4854 22 7 5.8174 -6.6434 0.7489 23 14 5.7230 -7.4793 -1.8851 24 1 5.4973 -6.7794 -3.1753 25 1 7.0588 -8.1276 -1.9002 26 1 4.6735 -8.5122 -1.6925 27 6 5.0045 -2.6864 0.2166 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2142 2.3158 -0.0054 32 1 1.3238 4.5074 0.0056 33 1 3.7756 4.6607 0.0159 34 1 5.6625 4.4814 -0.8673 35 1 5.6558 4.4766 0.9126 36 1 7.0752 3.8698 0.0267 37 1 4.4147 -0.0685 2.0119 38 1 6.4837 -1.2483 2.8952 39 1 7.6829 -3.3946 2.9156 40 1 7.1922 -5.1032 1.2223 41 1 5.9852 -7.5801 0.9370 42 1 4.2543 -2.4875 -0.5344 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313458677.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:03 Heat of formation + Delta-G solvation = -78.365011 kcal Electronic energy + Delta-G solvation = -27218.251480 eV Core-core repulsion = 23321.185841 eV Total energy + Delta-G solvation = -3897.065638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.98513 -40.67570 -40.15339 -38.88716 -37.41052 -36.20667 -34.84258 -32.58728 -31.77796 -30.64564 -29.84142 -28.75626 -27.70776 -27.27732 -25.25446 -23.15214 -22.81132 -22.67745 -21.40145 -19.85261 -19.50975 -18.47440 -17.95067 -17.51359 -17.46574 -17.10502 -16.75789 -16.52558 -16.48355 -16.20354 -15.81129 -15.69715 -15.16989 -14.86776 -14.63309 -14.13677 -13.92467 -13.63849 -13.59697 -13.52669 -13.08751 -12.98285 -12.92044 -12.80118 -12.45251 -12.41480 -12.25405 -12.18984 -11.94348 -11.70365 -11.54218 -11.18976 -10.91972 -10.71801 -9.67195 -9.41962 -9.20655 -8.78308 -8.62298 -6.38932 0.05340 0.33545 0.82143 0.97299 1.34868 1.45387 1.51140 1.74350 1.84902 2.19942 2.23501 2.58664 2.64607 2.71479 3.59600 3.72554 3.93139 3.98766 4.04819 4.21201 4.34575 4.36564 4.37872 4.40104 4.44336 4.48670 4.60127 4.69357 4.73074 5.01259 5.06496 5.09285 5.10007 5.13659 5.22738 5.30656 5.34526 5.45748 5.73355 5.84689 6.04388 6.08442 6.27057 6.31022 6.33674 6.58219 6.65883 6.90986 6.98861 7.25655 8.32603 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015118 B = 0.003386 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.621163 B = 8266.299306 C = 9206.116019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.345 6.345 3 C 0.184 3.816 4 C -0.243 4.243 5 C -0.009 4.009 6 C -0.241 4.241 7 C 0.187 3.813 8 O -0.341 6.341 9 C 0.017 3.983 10 C -0.236 4.236 11 C 0.579 3.421 12 O -0.569 6.569 13 N -0.649 5.649 14 C 0.157 3.843 15 C -0.251 4.251 16 C -0.088 4.088 17 C -0.196 4.196 18 C 0.091 3.909 19 C -0.504 4.504 20 H 0.059 0.941 21 C 0.039 3.961 22 N -0.820 5.820 23 Si 0.983 3.017 24 H -0.268 1.268 25 H -0.256 1.256 26 H -0.259 1.259 27 C -0.237 4.237 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.167 0.833 32 H 0.180 0.820 33 H 0.170 0.830 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.415 0.585 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.109 0.891 41 H 0.291 0.709 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.311 22.458 3.112 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.258 6.258 3 C 0.137 3.863 4 C -0.261 4.261 5 C -0.027 4.027 6 C -0.260 4.260 7 C 0.140 3.860 8 O -0.255 6.255 9 C -0.076 4.076 10 C -0.240 4.240 11 C 0.367 3.633 12 O -0.447 6.447 13 N -0.293 5.293 14 C 0.064 3.936 15 C -0.272 4.272 16 C -0.107 4.107 17 C -0.216 4.216 18 C 0.088 3.912 19 C -0.533 4.533 20 H 0.077 0.923 21 C -0.176 4.176 22 N -0.446 5.446 23 Si 0.804 3.196 24 H -0.192 1.192 25 H -0.180 1.180 26 H -0.183 1.183 27 C -0.259 4.259 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.103 0.897 31 H 0.184 0.816 32 H 0.197 0.803 33 H 0.187 0.813 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.252 0.748 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.127 0.873 41 H 0.101 0.899 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.851 21.579 2.521 23.460 hybrid contribution -0.162 -0.570 -0.347 0.687 sum -9.013 21.009 2.174 22.964 Atomic orbital electron populations 1.23462 0.75160 1.05495 1.03454 1.86120 1.24736 1.27417 1.87516 1.18829 0.89221 0.86045 0.92254 1.21438 1.01619 0.90758 1.12294 1.21364 0.93477 0.98121 0.89702 1.21453 0.95225 0.97130 1.12153 1.18751 0.83157 0.91945 0.92151 1.86091 1.17479 1.34378 1.87504 1.23485 1.00105 0.80650 1.03398 1.18287 0.91708 0.91508 1.22524 1.18366 0.78147 0.83652 0.83128 1.90786 1.55790 1.64988 1.33149 1.43338 1.56364 1.20361 1.09210 1.17604 0.94101 0.84443 0.97474 1.20454 1.02747 0.99981 1.04034 1.20838 0.98840 0.93041 0.97946 1.21310 1.01091 1.00014 0.99139 1.17827 0.89593 0.91272 0.92462 1.19747 1.40393 0.92431 1.00765 0.92265 1.26706 0.91193 1.00601 0.99064 1.69864 1.34733 1.18827 1.21206 0.85161 0.79559 0.77034 0.77895 1.19190 1.17984 1.18332 1.20913 1.05263 0.96345 1.03401 0.90487 0.87721 0.89730 0.81556 0.80309 0.81269 0.90693 0.89804 0.87209 0.74831 0.85261 0.85436 0.87346 0.89872 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.34 -11.13 9.95 -89.84 -0.89 -12.02 16 3 C 0.18 5.41 6.70 22.83 0.15 5.56 16 4 C -0.24 -4.46 9.02 22.34 0.20 -4.26 16 5 C -0.01 -0.12 10.02 22.27 0.22 0.10 16 6 C -0.24 -4.17 9.02 22.35 0.20 -3.97 16 7 C 0.19 5.21 6.70 22.83 0.15 5.37 16 8 O -0.34 -9.85 9.95 -89.76 -0.89 -10.74 16 9 C 0.02 0.26 9.81 113.37 1.11 1.38 16 10 C -0.24 -8.27 5.65 -19.94 -0.11 -8.38 16 11 C 0.58 26.58 6.04 86.60 0.52 27.10 16 12 O -0.57 -32.33 14.86 -4.14 -0.06 -32.39 16 13 N -0.65 -28.34 5.33 -306.77 -1.64 -29.98 16 14 C 0.16 8.10 6.25 38.12 0.24 8.34 16 15 C -0.25 -11.75 9.97 22.58 0.23 -11.53 16 16 C -0.09 -4.31 10.01 22.20 0.22 -4.08 16 17 C -0.20 -11.16 8.69 22.75 0.20 -10.96 16 18 C 0.09 5.64 5.57 -21.31 -0.12 5.53 16 19 C -0.50 -31.06 9.05 23.46 0.21 -30.85 16 20 H 0.06 3.71 7.90 -2.91 -0.02 3.69 16 21 C 0.04 2.16 5.16 85.25 0.44 2.60 16 22 N -0.82 -45.29 10.94 21.82 0.24 -45.05 16 23 Si 0.98 41.72 29.59 68.60 2.03 43.75 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 25 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 26 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 27 C -0.24 -14.31 8.39 22.85 0.19 -14.12 16 28 H 0.08 1.12 7.65 -2.38 -0.02 1.10 16 29 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.08 1.10 7.66 -2.39 -0.02 1.09 16 31 H 0.17 1.90 6.28 -2.91 -0.02 1.88 16 32 H 0.18 0.80 8.06 -2.91 -0.02 0.77 16 33 H 0.17 1.65 6.28 -2.91 -0.02 1.64 16 34 H 0.07 0.88 7.66 -2.38 -0.02 0.86 16 35 H 0.08 0.83 7.66 -2.39 -0.02 0.82 16 36 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.41 14.65 8.80 -92.71 -0.82 13.84 16 38 H 0.13 4.96 8.06 -2.91 -0.02 4.94 16 39 H 0.13 5.23 8.06 -2.91 -0.02 5.21 16 40 H 0.11 6.29 6.17 -2.91 -0.02 6.28 16 41 H 0.29 14.23 8.30 -92.70 -0.77 13.46 16 42 H 0.08 4.94 6.48 -2.91 -0.02 4.93 16 Total: -1.00 -87.37 359.10 4.22 -83.16 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: 0.26 Total: 34.02 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 5.18 Total: -30.74 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -1.40 Total: -75.03 kcal Atomic # 8 Polarization: -53.32 SS G_CDS: -1.85 Total: -55.16 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -87.37 4.22 -83.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313458677.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.791 kcal (2) G-P(sol) polarization free energy of solvation -87.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds