Wall clock time and date at job start Tue Mar 31 2020 14:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36002 * 117.00213 * 2 1 4 4 C 1.38467 * 120.00206 * 359.97211 * 3 2 1 5 5 C 1.38500 * 120.33826 * 180.02562 * 4 3 2 6 6 C 1.37795 * 120.34413 * 359.68127 * 5 4 3 7 7 C 1.39777 * 119.99655 * 0.59468 * 6 5 4 8 8 C 1.47518 * 120.16662 * 179.69504 * 7 6 5 9 9 O 1.21589 * 120.00018 * 179.72596 * 8 7 6 10 10 N 1.34782 * 119.99738 * 359.73454 * 8 7 6 11 11 C 1.39866 * 119.99405 * 175.95952 * 10 8 7 12 12 C 1.39311 * 119.94569 * 214.93656 * 11 10 8 13 13 C 1.38477 * 120.42387 * 179.72364 * 12 11 10 14 14 C 1.37687 * 120.32573 * 0.55267 * 13 12 11 15 15 C 1.40743 * 119.88826 * 359.72754 * 14 13 12 16 16 C 1.41408 * 120.21098 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99974 * 214.72003 * 16 15 14 18 18 C 1.39928 * 120.00088 * 34.71586 * 16 15 14 19 19 N 1.30835 * 120.00147 * 355.58470 * 18 16 15 20 20 Si 1.86797 * 120.00257 * 175.58852 * 18 16 15 21 21 H 1.48495 * 109.47362 * 59.99757 * 20 18 16 22 22 H 1.48502 * 109.47061 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46789 * 299.99618 * 20 18 16 24 24 C 1.38256 * 119.94961 * 35.21227 * 11 10 8 25 25 C 1.39132 * 120.00302 * 179.97438 * 3 2 1 26 26 O 1.35749 * 120.17289 * 359.97438 * 25 3 2 27 27 C 1.42904 * 117.00123 * 269.98078 * 26 25 3 28 28 H 1.09001 * 109.47453 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47466 * 300.00307 * 1 2 3 30 30 H 1.08999 * 109.47431 * 60.00059 * 1 2 3 31 31 H 1.08004 * 119.83411 * 0.02783 * 4 3 2 32 32 H 1.08001 * 119.83125 * 180.02562 * 5 4 3 33 33 H 1.07997 * 120.00443 * 180.29871 * 6 5 4 34 34 H 0.96998 * 120.00166 * 355.68189 * 10 8 7 35 35 H 1.08004 * 119.78383 * 359.97438 * 12 11 10 36 36 H 1.08004 * 119.83998 * 180.27098 * 13 12 11 37 37 H 1.08004 * 120.05505 * 179.74493 * 14 13 12 38 38 H 0.96998 * 120.00300 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.16564 * 359.97207 * 24 11 10 40 40 H 1.09002 * 109.47032 * 59.99962 * 27 26 25 41 41 H 1.09000 * 109.46709 * 179.97438 * 27 26 25 42 42 H 1.09000 * 109.47006 * 299.99767 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2924 2.3731 -0.0006 5 6 1.9139 3.6108 -0.0011 6 6 3.2890 3.6992 0.0055 7 6 4.0641 2.5360 0.0003 8 6 5.5365 2.6263 0.0006 9 8 6.2078 1.6125 0.0011 10 7 6.1377 3.8327 0.0005 11 6 7.5310 3.9196 0.0862 12 6 8.1206 4.9718 0.7833 13 6 9.4989 5.0644 0.8791 14 6 10.3025 4.1228 0.2764 15 6 9.7213 3.0573 -0.4362 16 6 10.5401 2.0862 -1.0575 17 1 10.2355 1.6419 -1.9935 18 6 11.7451 1.7009 -0.4595 19 7 12.1565 2.3000 0.6284 20 14 12.7664 0.3311 -1.2144 21 1 13.1565 0.7086 -2.5966 22 1 13.9870 0.1154 -0.3965 23 1 11.9673 -0.9201 -1.2498 24 6 8.3211 2.9643 -0.5259 25 6 3.4358 1.2846 0.0005 26 8 4.1786 0.1484 0.0016 27 6 4.5335 -0.3936 1.2754 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.2140 2.3135 -0.0006 32 1 1.3178 4.5114 -0.0012 33 1 3.7680 4.6672 0.0100 34 1 5.6043 4.6404 -0.0630 35 1 7.4985 5.7179 1.2553 36 1 9.9459 5.8817 1.4256 37 1 11.3771 4.2015 0.3505 38 1 12.9916 2.0327 1.0432 39 1 7.8651 2.1504 -1.0700 40 1 3.6282 -0.6350 1.8325 41 1 5.1244 -1.2985 1.1333 42 1 5.1181 0.3389 1.8318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313463612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:29 Heat of formation + Delta-G solvation = -47.751838 kcal Electronic energy + Delta-G solvation = -27088.723795 eV Core-core repulsion = 23192.985644 eV Total energy + Delta-G solvation = -3895.738152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.86492 -39.50307 -38.07874 -37.10202 -36.76372 -34.36586 -32.97516 -31.02033 -30.29599 -29.74859 -27.97169 -27.63852 -26.64672 -25.23512 -23.80948 -22.43144 -21.40145 -20.77873 -19.77668 -18.62171 -17.65213 -17.34491 -16.76001 -16.28638 -16.18928 -15.35795 -15.24271 -15.12369 -14.86106 -14.65094 -14.53714 -14.40724 -13.92730 -13.33160 -13.02633 -12.87770 -12.66502 -12.58551 -12.21366 -12.07057 -11.84807 -11.70985 -11.36896 -11.21623 -11.11926 -11.10782 -10.60676 -10.42197 -10.13103 -9.85488 -9.78542 -9.33658 -9.05989 -8.99731 -8.82080 -8.37418 -7.32656 -6.84146 -6.51699 -4.31293 0.62032 1.07413 2.70668 2.87491 2.90221 3.15036 3.16134 3.18767 3.28899 3.62603 3.69250 3.98801 4.07036 4.50925 4.65293 4.76492 4.78663 4.83281 4.91464 4.95366 5.16487 5.25234 5.37250 5.46179 5.64398 5.72092 5.86710 5.94352 6.00102 6.10165 6.24270 6.30671 6.39540 6.78826 6.94437 7.05469 7.08349 7.16334 7.37799 7.60067 7.65089 7.78087 8.00685 8.16482 8.21284 8.33983 8.70599 8.77316 9.03091 9.04382 10.38910 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017227 B = 0.003147 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.976286 B = 8895.260114 C =10179.767927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.304 6.304 3 C 0.099 3.901 4 C -0.180 4.180 5 C -0.094 4.094 6 C -0.113 4.113 7 C -0.111 4.111 8 C 0.543 3.457 9 O -0.487 6.487 10 N -0.662 5.662 11 C 0.141 3.859 12 C -0.250 4.250 13 C -0.100 4.100 14 C -0.160 4.160 15 C 0.113 3.887 16 C -0.459 4.459 17 H 0.075 0.925 18 C 0.071 3.929 19 N -0.814 5.814 20 Si 0.915 3.085 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.266 1.266 24 C -0.197 4.197 25 C 0.126 3.874 26 O -0.307 6.307 27 C 0.051 3.949 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.396 0.604 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.129 0.871 38 H 0.277 0.723 39 H 0.114 0.886 40 H 0.037 0.963 41 H 0.094 0.906 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.526 1.135 1.313 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.217 6.217 3 C 0.053 3.947 4 C -0.199 4.199 5 C -0.112 4.112 6 C -0.132 4.132 7 C -0.115 4.115 8 C 0.329 3.671 9 O -0.361 6.361 10 N -0.307 5.307 11 C 0.050 3.950 12 C -0.271 4.271 13 C -0.119 4.119 14 C -0.180 4.180 15 C 0.110 3.890 16 C -0.490 4.490 17 H 0.093 0.907 18 C -0.144 4.144 19 N -0.441 5.441 20 Si 0.740 3.260 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.190 1.190 24 C -0.218 4.218 25 C 0.079 3.921 26 O -0.223 6.223 27 C -0.043 4.043 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.231 0.769 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.147 0.853 38 H 0.088 0.912 39 H 0.132 0.868 40 H 0.056 0.944 41 H 0.113 0.887 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.701 0.048 1.347 20.745 hybrid contribution -0.239 0.082 0.046 0.257 sum -20.940 0.130 1.393 20.986 Atomic orbital electron populations 1.23100 0.78537 1.04135 1.01243 1.86199 1.21080 1.25868 1.88587 1.19327 0.91309 0.85176 0.98912 1.21281 1.00192 0.91857 1.06568 1.20855 0.94231 0.97175 0.98971 1.21197 0.93851 0.97362 1.00779 1.20337 0.94215 0.92836 1.04109 1.17943 0.86468 0.84197 0.78456 1.90883 1.64643 1.34520 1.46020 1.43305 1.06870 1.07748 1.72790 1.17434 0.79714 0.98111 0.99778 1.20116 0.94902 1.02031 1.10032 1.20535 0.92720 0.98659 0.99968 1.21648 1.00246 0.93816 1.02288 1.17566 0.90312 0.90753 0.90390 1.19462 1.02552 1.19584 1.07429 0.90730 1.25838 0.97044 0.97190 0.94282 1.69751 1.20375 1.37365 1.16622 0.86262 0.78721 0.81429 0.79599 1.19083 1.20493 1.19045 1.21265 0.93469 1.00732 1.06340 1.17975 0.86247 0.86560 1.01290 1.86030 1.69769 1.37089 1.29373 1.22865 0.98686 0.98980 0.83754 0.88080 0.92685 0.92558 0.84735 0.84847 0.84887 0.76872 0.89264 0.88963 0.85301 0.91214 0.86818 0.94440 0.88738 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.30 -3.67 10.28 -34.29 -0.35 -4.02 16 3 C 0.10 1.27 6.69 -39.17 -0.26 1.01 16 4 C -0.18 -1.73 9.03 -39.40 -0.36 -2.09 16 5 C -0.09 -0.86 10.02 -39.65 -0.40 -1.26 16 6 C -0.11 -1.28 9.53 -39.17 -0.37 -1.65 16 7 C -0.11 -1.72 5.88 -104.87 -0.62 -2.34 16 8 C 0.54 10.54 7.60 -12.48 -0.09 10.44 16 9 O -0.49 -11.47 11.46 -16.61 -0.19 -11.66 16 10 N -0.66 -12.22 5.28 -10.85 -0.06 -12.28 16 11 C 0.14 3.23 6.29 -83.79 -0.53 2.71 16 12 C -0.25 -5.49 9.97 -39.09 -0.39 -5.88 16 13 C -0.10 -2.34 10.01 -39.69 -0.40 -2.74 16 14 C -0.16 -4.25 8.67 -38.84 -0.34 -4.59 16 15 C 0.11 3.15 5.55 -106.85 -0.59 2.55 16 16 C -0.46 -12.90 9.04 -37.74 -0.34 -13.25 16 17 H 0.07 2.04 7.85 -52.49 -0.41 1.63 16 18 C 0.07 1.88 5.42 -17.34 -0.09 1.79 16 19 N -0.81 -21.95 10.60 55.55 0.59 -21.36 16 20 Si 0.91 19.98 29.56 -169.99 -5.03 14.96 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 C -0.20 -5.19 8.43 -38.68 -0.33 -5.52 16 25 C 0.13 2.01 5.75 -38.58 -0.22 1.78 16 26 O -0.31 -5.55 8.62 -47.55 -0.41 -5.96 16 27 C 0.05 0.79 10.49 101.05 1.06 1.85 16 28 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 31 H 0.13 0.87 6.27 -52.48 -0.33 0.55 16 32 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.13 1.19 6.41 -52.49 -0.34 0.85 16 34 H 0.40 5.60 6.86 -40.82 -0.28 5.32 16 35 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 36 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 37 H 0.13 3.54 6.13 -52.48 -0.32 3.22 16 38 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 39 H 0.11 3.13 6.23 -52.49 -0.33 2.80 16 40 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.05 0.84 7.50 -51.93 -0.39 0.45 16 LS Contribution 354.77 15.07 5.35 5.35 Total: -1.00 -33.68 354.77 -8.24 -41.91 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -4.86 Total: 9.08 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -3.28 Total: -16.02 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.53 Total: -33.64 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.95 Total: -21.64 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.68 -8.24 -41.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313463612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.837 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds