Wall clock time and date at job start Tue Mar 31 2020 14:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34710 * 117.00435 * 2 1 4 4 O 1.21471 * 119.99406 * 0.02562 * 3 2 1 5 5 C 1.47722 * 120.00743 * 179.97438 * 3 2 1 6 6 C 1.39630 * 120.15471 * 180.02562 * 5 3 2 7 7 C 1.37940 * 119.85037 * 180.02562 * 6 5 3 8 8 C 1.38373 * 120.14692 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.84292 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.47179 * 90.00156 * 9 8 7 11 11 C 1.39779 * 119.99819 * 179.97438 * 10 9 8 12 12 C 1.38949 * 120.00373 * 180.02562 * 11 10 9 13 13 C 1.38007 * 119.99518 * 179.97438 * 12 11 10 14 14 C 1.38902 * 120.00593 * 0.02562 * 13 12 11 15 15 O 1.35796 * 119.99558 * 179.97438 * 14 13 12 16 16 C 1.34814 * 116.99905 * 5.54231 * 15 14 13 17 17 H 1.08001 * 119.99962 * 354.94516 * 16 15 14 18 18 C 1.38627 * 119.99781 * 174.94495 * 16 15 14 19 19 N 1.31573 * 120.00047 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99754 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47287 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47447 * 119.99694 * 20 18 16 23 23 H 1.48505 * 109.46879 * 239.99755 * 20 18 16 24 24 C 1.38899 * 120.00959 * 0.23780 * 14 13 12 25 25 C 1.38012 * 120.00613 * 359.48059 * 24 14 13 26 26 C 1.38366 * 120.30506 * 0.23404 * 8 7 6 27 27 C 1.37939 * 120.14916 * 359.48731 * 26 8 7 28 28 H 1.09008 * 109.46887 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46887 * 299.99702 * 1 2 3 30 30 H 1.09000 * 109.47112 * 59.99782 * 1 2 3 31 31 H 1.08000 * 120.06654 * 0.02562 * 6 5 3 32 32 H 1.08001 * 119.92613 * 180.02562 * 7 6 5 33 33 H 1.08997 * 109.47519 * 329.99952 * 9 8 7 34 34 H 1.09000 * 109.47011 * 210.00338 * 9 8 7 35 35 H 0.96996 * 119.99685 * 0.02562 * 10 9 8 36 36 H 1.07999 * 120.00601 * 359.95851 * 12 11 10 37 37 H 1.08001 * 119.99981 * 180.02562 * 13 12 11 38 38 H 0.97001 * 120.00236 * 180.02562 * 19 18 16 39 39 H 1.08002 * 119.99383 * 179.74343 * 24 14 13 40 40 H 1.08001 * 120.00015 * 180.22690 * 25 24 14 41 41 H 1.08005 * 119.92026 * 179.72135 * 26 8 7 42 42 H 1.07997 * 120.07555 * 180.25529 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.1760 2.5201 0.0011 7 6 5.5539 2.5850 0.0011 8 6 6.3044 1.4225 0.0000 9 6 7.8093 1.5014 -0.0005 10 7 8.2976 1.5261 1.3805 11 6 9.6701 1.5973 1.6354 12 6 10.1334 1.6202 2.9452 13 6 11.4886 1.6900 3.1966 14 6 12.3894 1.7380 2.1404 15 8 13.7228 1.8073 2.3880 16 6 14.1121 1.7101 3.6750 17 1 13.3727 1.6655 4.4610 18 6 15.4616 1.6675 3.9896 19 7 16.3623 1.7213 3.0320 20 14 16.0010 1.5321 5.7728 21 1 14.8038 1.4881 6.6502 22 1 16.7960 0.2914 5.9568 23 1 16.8323 2.7100 6.1292 24 6 11.9263 1.7207 0.8310 25 6 10.5715 1.6450 0.5790 26 6 5.6795 0.1880 -0.0059 27 6 4.3024 0.1085 -0.0002 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.5913 3.4280 0.0015 32 1 6.0480 3.5453 0.0019 33 1 8.1254 2.4095 -0.5139 34 1 8.2185 0.6321 -0.5152 35 1 7.6685 1.4922 2.1180 36 1 9.4330 1.5836 3.7665 37 1 11.8487 1.7074 4.2146 38 1 17.3066 1.6911 3.2521 39 1 12.6268 1.7622 0.0100 40 1 10.2117 1.6279 -0.4392 41 1 6.2714 -0.7154 -0.0113 42 1 3.8159 -0.8556 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314370451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:19 Heat of formation + Delta-G solvation = -52.476637 kcal Electronic energy + Delta-G solvation = -25083.606117 eV Core-core repulsion = 21187.663083 eV Total energy + Delta-G solvation = -3895.943034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.98412 -39.56549 -38.91486 -37.10669 -36.80942 -34.72735 -32.32868 -31.74101 -31.44525 -30.21970 -28.66600 -27.54220 -26.01351 -24.85796 -23.24385 -23.07785 -21.89384 -21.00484 -20.63982 -18.48089 -17.86246 -17.53207 -17.15064 -16.78189 -16.65837 -15.60470 -15.50372 -15.16664 -14.93142 -14.42388 -14.03748 -13.96900 -13.89739 -13.67899 -13.63706 -13.45196 -13.24306 -12.82800 -12.68521 -12.56539 -12.43576 -11.83732 -11.62132 -11.56181 -11.35440 -11.29100 -11.26465 -10.96457 -10.94143 -10.56759 -10.36046 -9.42803 -9.37387 -9.24796 -9.20210 -8.46743 -8.18668 -6.43606 -6.33208 -3.90400 0.20457 0.95061 2.08142 2.18865 2.22779 2.54900 3.17750 3.19212 3.24363 3.27639 3.96577 4.05612 4.20445 4.38430 4.47041 4.54271 4.65337 4.66765 4.73239 4.90660 4.94465 5.06305 5.19200 5.30694 5.38594 5.40237 5.54155 5.61866 5.64350 5.73820 5.76090 5.83497 5.97335 6.17354 6.18846 6.22180 6.40201 6.51756 6.84547 6.88007 7.11456 7.28587 7.31394 7.42946 7.61677 7.92803 8.11228 8.18503 9.12923 9.87049 10.85575 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.035944 B = 0.001689 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.806528 B =16570.886683 C =16871.809108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.509 3.491 4 O -0.507 6.507 5 C -0.129 4.129 6 C -0.056 4.056 7 C -0.113 4.113 8 C -0.059 4.059 9 C 0.168 3.832 10 N -0.756 5.756 11 C 0.122 3.878 12 C -0.139 4.139 13 C -0.190 4.190 14 C 0.114 3.886 15 O -0.188 6.188 16 C -0.387 4.387 17 H 0.089 0.911 18 C 0.036 3.964 19 N -0.868 5.868 20 Si 0.938 3.062 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.277 1.277 24 C -0.151 4.151 25 C -0.145 4.145 26 C -0.115 4.115 27 C -0.063 4.063 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.392 0.608 36 H 0.106 0.894 37 H 0.128 0.872 38 H 0.267 0.733 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.136 0.864 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.604 -3.461 -6.681 28.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.355 3.645 4 O -0.396 6.396 5 C -0.130 4.130 6 C -0.074 4.074 7 C -0.131 4.131 8 C -0.060 4.060 9 C 0.044 3.956 10 N -0.392 5.392 11 C 0.024 3.976 12 C -0.161 4.161 13 C -0.210 4.210 14 C 0.062 3.938 15 O -0.093 6.093 16 C -0.464 4.464 17 H 0.106 0.894 18 C -0.167 4.167 19 N -0.505 5.505 20 Si 0.763 3.237 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.171 4.171 25 C -0.167 4.167 26 C -0.133 4.133 27 C -0.081 4.081 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.226 0.774 36 H 0.124 0.876 37 H 0.145 0.855 38 H 0.077 0.923 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.153 0.847 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -27.362 -3.145 -7.043 28.428 hybrid contribution -0.290 -0.044 1.233 1.267 sum -27.652 -3.189 -5.810 28.435 Atomic orbital electron populations 1.23309 0.75746 1.03927 1.02735 1.86543 1.23744 1.32609 1.84272 1.21269 0.89214 0.81459 0.72590 1.90840 1.66830 1.36051 1.45840 1.19114 0.88814 0.95221 1.09853 1.21272 0.94589 0.96706 0.94810 1.21128 0.92971 0.98849 1.00190 1.20353 0.96134 0.93259 0.96232 1.20091 0.87716 1.01897 0.85924 1.44127 1.03633 1.86656 1.04828 1.17360 0.82834 1.04052 0.93323 1.20229 0.95165 1.06857 0.93888 1.20997 0.92295 1.08042 0.99664 1.19255 0.85340 0.96262 0.92969 1.83987 1.16280 1.80062 1.28982 1.21288 0.92080 1.52041 0.80955 0.89374 1.25216 0.94706 0.97049 0.99717 1.70054 1.01151 1.47332 1.31927 0.85697 0.78998 0.78136 0.80860 1.19264 1.20309 1.20320 1.20023 0.94529 1.07949 0.94554 1.20170 0.92069 1.07732 0.96743 1.21167 0.94155 0.97892 1.00122 1.21467 0.93803 0.97924 0.94939 0.87812 0.91716 0.91739 0.84398 0.84554 0.91717 0.91702 0.77439 0.87621 0.85475 0.92345 0.86486 0.87109 0.84660 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.96 9.82 -40.52 -0.40 -3.36 16 3 C 0.51 5.11 7.90 34.61 0.27 5.38 16 4 O -0.51 -6.23 16.14 -19.24 -0.31 -6.55 16 5 C -0.13 -1.17 5.87 -104.98 -0.62 -1.79 16 6 C -0.06 -0.49 9.60 -39.17 -0.38 -0.86 16 7 C -0.11 -0.94 9.68 -39.64 -0.38 -1.32 16 8 C -0.06 -0.51 5.25 -104.53 -0.55 -1.06 16 9 C 0.17 1.68 5.03 -5.19 -0.03 1.66 16 10 N -0.76 -9.41 5.73 -59.76 -0.34 -9.75 16 11 C 0.12 2.01 6.66 -83.71 -0.56 1.45 16 12 C -0.14 -2.51 9.89 -39.40 -0.39 -2.90 16 13 C -0.19 -4.11 9.16 -39.42 -0.36 -4.47 16 14 C 0.11 2.76 6.65 -39.09 -0.26 2.50 16 15 O -0.19 -5.43 9.76 -0.05 0.00 -5.43 16 16 C -0.39 -10.94 9.48 30.88 0.29 -10.65 16 17 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 18 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 19 N -0.87 -25.84 13.67 55.48 0.76 -25.08 16 20 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 C -0.15 -3.15 9.98 -39.42 -0.39 -3.54 16 25 C -0.14 -2.52 9.30 -39.40 -0.37 -2.89 16 26 C -0.11 -0.91 9.68 -39.64 -0.38 -1.29 16 27 C -0.06 -0.49 9.62 -39.17 -0.38 -0.87 16 28 H 0.10 0.28 8.14 -51.92 -0.42 -0.15 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.14 1.14 7.65 -52.49 -0.40 0.74 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.06 0.64 7.89 -51.93 -0.41 0.23 16 34 H 0.06 0.64 7.89 -51.93 -0.41 0.23 16 35 H 0.39 4.45 8.48 -40.82 -0.35 4.10 16 36 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.13 2.77 5.63 -52.49 -0.30 2.48 16 38 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 40 H 0.11 1.60 6.73 -52.49 -0.35 1.25 16 41 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 42 H 0.14 0.87 7.61 -52.49 -0.40 0.47 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -33.24 367.82 -8.26 -41.49 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -4.98 Total: 5.79 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -3.50 Total: -18.47 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.42 Total: -34.84 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.71 Total: -15.33 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.24 -8.26 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314370451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.982 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds