Wall clock time and date at job start Tue Mar 31 2020 15:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42097 * 108.57794 * 2 1 4 4 O 1.42098 * 108.57854 * 228.97180 * 2 1 3 5 5 C 1.81404 * 101.92102 * 114.48699 * 2 1 3 6 6 C 1.52998 * 109.46830 * 189.59918 * 5 2 1 7 7 C 1.53003 * 115.55355 * 303.52964 * 6 5 2 8 8 N 1.46891 * 109.47080 * 145.94727 * 7 6 5 9 9 C 1.46903 * 111.00642 * 292.76289 * 8 7 6 10 10 C 1.50698 * 109.47164 * 157.55226 * 9 8 7 11 11 H 1.07992 * 120.00315 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99749 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00332 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 120.00071 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47350 * 90.00149 * 14 12 10 16 16 H 1.48499 * 109.47158 * 210.00383 * 14 12 10 17 17 H 1.48501 * 109.47133 * 329.99570 * 14 12 10 18 18 C 1.46901 * 110.99980 * 168.80875 * 8 7 6 19 19 C 1.50702 * 109.47403 * 286.91902 * 18 8 7 20 20 C 1.34508 * 125.79393 * 94.60304 * 19 18 8 21 21 C 1.41377 * 106.84740 * 180.02562 * 20 19 18 22 22 C 1.34514 * 106.83837 * 0.02562 * 21 20 19 23 23 O 1.34307 * 108.42357 * 0.02562 * 22 21 20 24 24 C 1.53003 * 117.51679 * 89.23448 * 6 5 2 25 25 C 1.52998 * 59.99937 * 107.47938 * 24 6 5 26 26 H 1.08998 * 109.47330 * 305.51121 * 1 2 3 27 27 H 1.08998 * 109.47341 * 65.51612 * 1 2 3 28 28 H 1.09004 * 109.47339 * 185.51289 * 1 2 3 29 29 H 1.09005 * 109.47198 * 69.59858 * 5 2 1 30 30 H 1.08996 * 109.47023 * 309.60172 * 5 2 1 31 31 H 1.09000 * 109.46898 * 25.95073 * 7 6 5 32 32 H 1.08994 * 109.47325 * 265.95231 * 7 6 5 33 33 H 1.08994 * 109.46967 * 277.55548 * 9 8 7 34 34 H 1.09006 * 109.46641 * 37.55332 * 9 8 7 35 35 H 0.96999 * 120.00607 * 180.02562 * 13 12 10 36 36 H 1.09006 * 109.47341 * 166.91927 * 18 8 7 37 37 H 1.09004 * 109.47141 * 46.91689 * 18 8 7 38 38 H 1.08005 * 126.57285 * 359.97438 * 20 19 18 39 39 H 1.08002 * 126.58560 * 180.02562 * 21 20 19 40 40 H 1.07996 * 125.79454 * 179.97438 * 22 21 20 41 41 H 1.09004 * 117.49593 * 214.96776 * 24 6 5 42 42 H 1.08993 * 117.50223 * 359.97438 * 24 6 5 43 43 H 1.09001 * 117.50071 * 252.51014 * 25 24 6 44 44 H 1.09005 * 117.50187 * 107.48908 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6153 6 6 3.6857 -0.6018 1.9017 7 6 4.6158 -1.2086 0.8492 8 7 5.8364 -0.3976 0.7486 9 6 5.5419 0.9307 0.1946 10 6 6.6261 1.8957 0.5999 11 1 7.4516 1.5562 1.2078 12 6 6.5642 3.2121 0.1946 13 7 7.5105 4.0542 0.5478 14 14 5.1359 3.7996 -0.8564 15 1 4.0385 4.2778 0.0223 16 1 5.5892 4.9105 -1.7313 17 1 4.6446 2.6774 -1.6959 18 6 6.8610 -1.0850 -0.0487 19 6 7.4370 -2.2260 0.7498 20 6 7.0307 -3.5072 0.6970 21 6 7.8389 -4.2310 1.6034 22 6 8.6905 -3.3487 2.1565 23 8 8.4419 -2.1357 1.6363 24 6 4.1582 0.6665 2.6151 25 6 4.1340 -0.6680 3.3630 26 1 -0.3634 0.5969 0.8365 27 1 -0.3634 0.4259 -0.9352 28 1 -0.3634 -1.0229 0.0987 29 1 1.9132 -1.7903 1.6069 30 1 1.6228 -0.2185 2.3901 31 1 4.1101 -1.2253 -0.1162 32 1 4.8783 -2.2258 1.1395 33 1 5.4980 0.8693 -0.8927 34 1 4.5830 1.2797 0.5778 35 1 7.4668 4.9804 0.2630 36 1 7.6548 -0.3828 -0.3036 37 1 6.4109 -1.4722 -0.9628 38 1 6.2384 -3.9062 0.0809 39 1 7.7833 -5.2892 1.8120 40 1 9.4455 -3.5768 2.8942 41 1 5.1318 1.0687 2.3346 42 1 3.4027 1.4061 2.8802 43 1 3.3625 -0.8066 4.1204 44 1 5.0916 -1.1438 3.5746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336821984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:50 Heat of formation + Delta-G solvation = 1.650625 kcal Electronic energy + Delta-G solvation = -27604.422533 eV Core-core repulsion = 23846.270584 eV Total energy + Delta-G solvation = -3758.151949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.14702 -38.86402 -36.88013 -35.86130 -35.53167 -32.71987 -32.32960 -30.24855 -29.96594 -29.23651 -27.93729 -26.22822 -23.63780 -21.94316 -21.36225 -20.76683 -19.99111 -19.09456 -18.55920 -16.99109 -16.78218 -16.53090 -16.20198 -16.00318 -15.68122 -15.04956 -14.72568 -14.47626 -14.07936 -13.57117 -13.46522 -13.39809 -13.25770 -13.07395 -12.68840 -12.53710 -12.40419 -12.31441 -12.16943 -11.85006 -11.80958 -11.68684 -11.19590 -11.09019 -10.87391 -10.84128 -10.68848 -10.34851 -10.15348 -9.82751 -9.63582 -9.57919 -9.22127 -9.15219 -8.42906 -8.11433 -7.43993 -5.94883 -3.93015 -0.03611 2.12185 2.76558 2.92425 3.43437 3.47305 3.54740 3.65132 3.68293 3.92316 4.17301 4.49137 4.58488 4.58863 4.63572 4.79322 5.00708 5.09540 5.18146 5.32923 5.35942 5.38556 5.40891 5.42347 5.51876 5.63343 5.77406 6.00818 6.06947 6.11381 6.14795 6.20345 6.25197 6.34632 6.51839 6.59296 6.82338 6.96489 7.00789 7.24279 7.56143 7.71984 7.84749 7.98849 8.72020 9.15372 9.68171 11.17015 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009374 B = 0.006576 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2986.214515 B = 4256.595963 C = 6223.340865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.666 4.666 2 S 2.402 3.598 3 O -0.914 6.914 4 O -0.937 6.937 5 C -0.562 4.562 6 C -0.135 4.135 7 C 0.057 3.943 8 N -0.517 5.517 9 C 0.139 3.861 10 C -0.509 4.509 11 H 0.083 0.917 12 C 0.075 3.925 13 N -0.899 5.899 14 Si 0.864 3.136 15 H -0.268 1.268 16 H -0.292 1.292 17 H -0.262 1.262 18 C 0.128 3.872 19 C 0.031 3.969 20 C -0.230 4.230 21 C -0.217 4.217 22 C -0.053 4.053 23 O -0.161 6.161 24 C -0.154 4.154 25 C -0.151 4.151 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.049 0.951 32 H 0.080 0.920 33 H -0.008 1.008 34 H 0.057 0.943 35 H 0.262 0.738 36 H 0.107 0.893 37 H 0.060 0.940 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.195 0.805 41 H 0.155 0.845 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.773 -14.323 3.145 18.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.814 4.814 2 S 2.584 3.416 3 O -0.911 6.911 4 O -0.934 6.934 5 C -0.692 4.692 6 C -0.137 4.137 7 C -0.071 4.071 8 N -0.242 5.242 9 C 0.014 3.986 10 C -0.547 4.547 11 H 0.101 0.899 12 C -0.127 4.127 13 N -0.538 5.538 14 Si 0.691 3.309 15 H -0.193 1.193 16 H -0.218 1.218 17 H -0.187 1.187 18 C 0.001 3.999 19 C -0.021 4.021 20 C -0.250 4.250 21 C -0.236 4.236 22 C -0.121 4.121 23 O -0.056 6.056 24 C -0.191 4.191 25 C -0.189 4.189 26 H 0.145 0.855 27 H 0.146 0.854 28 H 0.143 0.857 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.010 0.990 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.078 0.922 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.212 0.788 41 H 0.173 0.827 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.847 -13.472 2.976 17.551 hybrid contribution -1.949 -0.416 -0.669 2.102 sum -12.797 -13.888 2.307 19.025 Atomic orbital electron populations 1.30388 1.28265 1.11078 1.11632 1.08544 0.77836 0.76798 0.78416 1.93677 1.77732 1.33572 1.86104 1.93575 1.78278 1.67199 1.54330 1.29804 1.03880 1.13068 1.22413 1.20812 0.88874 1.07611 0.96389 1.21979 0.91381 0.97591 0.96196 1.61876 1.06740 1.03424 1.52112 1.20696 0.99574 0.85149 0.93172 1.20959 1.08130 0.92568 1.33018 0.89938 1.24830 0.95640 0.96653 0.95613 1.69903 1.33344 1.04439 1.46109 0.86997 0.83308 0.78932 0.81633 1.19332 1.21794 1.18687 1.20524 0.96115 0.92152 0.91129 1.22677 0.89843 0.96240 0.93329 1.21526 1.04776 0.93303 1.05388 1.21688 0.99741 1.00394 1.01767 1.23928 1.03344 0.82370 1.02501 1.84123 1.44213 1.32034 1.45196 1.23766 1.06562 0.89257 0.99493 1.22920 1.02126 1.02881 0.90963 0.85463 0.85427 0.85669 0.85101 0.85179 0.93308 0.90158 0.99032 0.92490 0.92789 0.87478 0.92180 0.84117 0.84186 0.78795 0.82748 0.89508 0.89875 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -5.33 10.62 101.05 1.07 -4.26 16 2 S 2.40 32.66 4.93 -107.50 -0.53 32.13 16 3 O -0.91 -16.94 16.64 -57.83 -0.96 -17.90 16 4 O -0.94 -15.47 15.94 -57.83 -0.92 -16.40 16 5 C -0.56 -6.36 5.72 37.16 0.21 -6.15 16 6 C -0.14 -2.14 1.71 -154.51 -0.26 -2.40 16 7 C 0.06 1.01 4.82 -3.83 -0.02 0.99 16 8 N -0.52 -10.76 3.55 -237.52 -0.84 -11.60 16 9 C 0.14 3.40 2.57 -4.98 -0.01 3.39 16 10 C -0.51 -14.34 8.26 -34.44 -0.28 -14.62 16 11 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 12 C 0.07 2.19 5.47 -17.82 -0.10 2.10 16 13 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 14 Si 0.86 22.89 27.47 -169.99 -4.67 18.22 16 15 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 17 H -0.26 -6.91 6.54 56.52 0.37 -6.54 16 18 C 0.13 2.49 5.32 -4.97 -0.03 2.46 16 19 C 0.03 0.55 6.33 -35.63 -0.23 0.32 16 20 C -0.23 -3.52 9.63 -39.71 -0.38 -3.90 16 21 C -0.22 -2.94 10.91 -39.70 -0.43 -3.38 16 22 C -0.05 -0.74 12.09 29.42 0.36 -0.39 16 23 O -0.16 -2.91 10.65 5.68 0.06 -2.85 16 24 C -0.15 -2.79 7.82 -26.73 -0.21 -2.99 16 25 C -0.15 -2.24 9.97 -26.73 -0.27 -2.51 16 26 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.13 0.97 8.14 -51.92 -0.42 0.55 16 28 H 0.12 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.13 1.07 8.14 -51.92 -0.42 0.65 16 30 H 0.13 1.07 8.10 -51.93 -0.42 0.65 16 31 H 0.05 0.89 5.14 -51.93 -0.27 0.63 16 32 H 0.08 1.31 6.37 -51.93 -0.33 0.98 16 33 H -0.01 -0.21 7.02 -51.93 -0.36 -0.57 16 34 H 0.06 1.38 3.38 -51.93 -0.18 1.20 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.11 2.27 7.45 -51.93 -0.39 1.88 16 37 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 38 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 39 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 40 H 0.20 1.93 8.06 -52.49 -0.42 1.51 16 41 H 0.15 3.44 4.68 -51.93 -0.24 3.20 16 42 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 362.84 15.07 5.47 5.47 Total: -1.00 -36.31 362.84 -8.63 -44.94 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.42 Total: 6.32 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: -0.58 Total: -31.34 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: -0.07 Total: -38.59 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -1.82 Total: -37.15 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.67 Total: 18.22 kcal Atomic # 16 Polarization: 32.66 SS G_CDS: -0.53 Total: 32.13 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.31 -8.63 -44.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336821984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.589 kcal (2) G-P(sol) polarization free energy of solvation -36.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds