Wall clock time and date at job start Tue Mar 31 2020 14:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35708 * 117.00394 * 2 1 4 4 C 1.39175 * 119.86049 * 359.97438 * 3 2 1 5 5 C 1.36553 * 120.37461 * 180.02562 * 4 3 2 6 6 C 1.39858 * 120.08616 * 359.97438 * 5 4 3 7 7 C 1.47254 * 120.14206 * 180.02562 * 6 5 4 8 8 O 1.21628 * 120.00199 * 179.97438 * 7 6 5 9 9 N 1.34775 * 119.99414 * 359.97438 * 7 6 5 10 10 C 1.39020 * 119.99500 * 175.80534 * 9 7 6 11 11 C 1.38682 * 120.28892 * 34.55903 * 10 9 7 12 12 C 1.38197 * 120.02902 * 179.97438 * 11 10 9 13 13 C 1.38873 * 120.62333 * 0.02562 * 12 11 10 14 14 C 1.36450 * 120.58566 * 0.02562 * 13 12 11 15 15 C 1.40744 * 119.94473 * 359.65758 * 14 13 12 16 16 C 1.41053 * 120.30540 * 180.33612 * 15 14 13 17 17 H 1.07997 * 120.00244 * 214.95012 * 16 15 14 18 18 C 1.39969 * 119.99635 * 34.95976 * 16 15 14 19 19 N 1.30852 * 119.99691 * 355.67053 * 18 16 15 20 20 Si 1.86799 * 119.99821 * 175.67260 * 18 16 15 21 21 H 1.48506 * 109.47073 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46828 * 119.99723 * 20 18 16 23 23 H 1.48491 * 109.47216 * 239.99811 * 20 18 16 24 24 C 1.40346 * 119.72501 * 359.97438 * 6 5 4 25 25 O 1.35649 * 120.18953 * 179.97438 * 24 6 5 26 26 C 1.42898 * 117.00736 * 179.97438 * 25 24 6 27 27 C 1.38482 * 119.63088 * 0.24828 * 24 6 5 28 28 H 1.08998 * 109.47551 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46743 * 300.00498 * 1 2 3 30 30 H 1.08999 * 109.47290 * 60.00007 * 1 2 3 31 31 H 1.07997 * 119.81186 * 0.02562 * 4 3 2 32 32 H 1.07993 * 119.95587 * 179.97438 * 5 4 3 33 33 H 0.96995 * 120.00595 * 355.80925 * 9 7 6 34 34 H 1.07996 * 119.98432 * 359.97438 * 11 10 9 35 35 H 1.08002 * 119.68856 * 179.97438 * 12 11 10 36 36 H 1.08004 * 119.71113 * 180.02562 * 13 12 11 37 37 H 1.08000 * 120.03420 * 179.97438 * 14 13 12 38 38 H 0.96996 * 119.99363 * 180.02562 * 19 18 16 39 39 H 1.09001 * 109.47087 * 300.00139 * 26 25 24 40 40 H 1.08994 * 109.47572 * 179.97438 * 26 25 24 41 41 H 1.09006 * 109.47094 * 59.99412 * 26 25 24 42 42 H 1.07992 * 120.04834 * 179.72765 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 1.2844 2.3745 -0.0005 5 6 1.8935 3.5967 -0.0011 6 6 3.2893 3.6844 -0.0005 7 6 3.9474 5.0018 -0.0005 8 8 5.1615 5.0751 0.0004 9 7 3.2043 6.1261 -0.0016 10 6 3.8228 7.3680 0.0865 11 6 5.0571 7.5786 -0.5097 12 6 5.6669 8.8154 -0.4193 13 6 5.0556 9.8571 0.2661 14 6 3.8417 9.6776 0.8630 15 6 3.1959 8.4298 0.7804 16 6 1.9378 8.2380 1.3886 17 1 1.6904 7.2830 1.8281 18 6 1.0098 9.2852 1.4222 19 7 1.3395 10.4664 0.9659 20 14 -0.6994 8.9966 2.1186 21 1 -0.8198 7.5857 2.5662 22 1 -0.9226 9.9026 3.2739 23 1 -1.7141 9.2722 1.0702 24 6 4.0603 2.5117 0.0011 25 8 5.4147 2.5858 0.0011 26 6 6.1322 1.3500 0.0034 27 6 3.4306 1.2784 -0.0031 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2062 2.3119 -0.0005 32 1 1.2966 4.4967 -0.0019 33 1 2.2381 6.0689 -0.0637 34 1 5.5420 6.7756 -1.0449 35 1 6.6284 8.9732 -0.8853 36 1 5.5451 10.8179 0.3272 37 1 3.3746 10.4938 1.3941 38 1 0.6965 11.1923 0.9896 39 1 5.8702 0.7794 0.8944 40 1 7.2034 1.5517 0.0027 41 1 5.8703 0.7762 -0.8856 42 1 4.0172 0.3717 -0.0063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339170760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:50 Heat of formation + Delta-G solvation = -71.839341 kcal Electronic energy + Delta-G solvation = -27171.731260 eV Core-core repulsion = 23274.948596 eV Total energy + Delta-G solvation = -3896.782664 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.90025 -40.79635 -39.99107 -38.82459 -37.43333 -35.45109 -35.39347 -32.22935 -31.44191 -31.27801 -30.03933 -28.21263 -28.12543 -27.03229 -24.80145 -23.43398 -23.00627 -22.32179 -21.04825 -19.93532 -19.21138 -18.59333 -18.11557 -17.51387 -17.17779 -17.01420 -16.80310 -16.47057 -16.15475 -15.94848 -15.78444 -15.70787 -15.03120 -14.70362 -14.35365 -14.23736 -14.08471 -13.73643 -13.61504 -13.46847 -13.19068 -12.98057 -12.80684 -12.70840 -12.51261 -12.42489 -12.09626 -11.96912 -11.90601 -11.67450 -11.55218 -11.06336 -10.89064 -10.47698 -9.74178 -9.24825 -9.20504 -8.73527 -8.41403 -6.33610 -0.17106 0.30313 0.92307 1.11342 1.43983 1.53522 1.58466 1.96670 2.09021 2.26100 2.36017 2.48758 2.78441 2.85167 3.61568 3.71304 3.87321 3.96228 4.08330 4.15433 4.36876 4.41033 4.42064 4.44159 4.50941 4.53468 4.65278 4.71384 4.76908 4.79582 4.88961 5.10765 5.16139 5.20696 5.25127 5.38569 5.40344 5.48285 5.82604 5.90515 6.17771 6.20910 6.22441 6.30020 6.38970 6.69582 6.79939 6.99422 7.05074 7.47526 8.45526 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011348 B = 0.004088 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.787574 B = 6847.101138 C = 9125.066635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.320 6.320 3 C 0.195 3.805 4 C -0.243 4.243 5 C -0.006 4.006 6 C -0.233 4.233 7 C 0.544 3.456 8 O -0.561 6.561 9 N -0.637 5.637 10 C 0.022 3.978 11 C -0.109 4.109 12 C -0.218 4.218 13 C -0.125 4.125 14 C -0.163 4.163 15 C 0.067 3.933 16 C -0.490 4.490 17 H 0.078 0.922 18 C 0.032 3.968 19 N -0.838 5.838 20 Si 0.986 3.014 21 H -0.252 1.252 22 H -0.273 1.273 23 H -0.267 1.267 24 C 0.211 3.789 25 O -0.309 6.309 26 C 0.011 3.989 27 C -0.259 4.259 28 H 0.124 0.876 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.168 0.832 32 H 0.148 0.852 33 H 0.409 0.591 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.284 0.716 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.074 0.926 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.630 -19.852 -1.799 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.233 6.233 3 C 0.148 3.852 4 C -0.262 4.262 5 C -0.025 4.025 6 C -0.237 4.237 7 C 0.335 3.665 8 O -0.441 6.441 9 N -0.280 5.280 10 C -0.073 4.073 11 C -0.130 4.130 12 C -0.238 4.238 13 C -0.143 4.143 14 C -0.183 4.183 15 C 0.064 3.936 16 C -0.521 4.521 17 H 0.097 0.903 18 C -0.180 4.180 19 N -0.466 5.466 20 Si 0.807 3.193 21 H -0.175 1.175 22 H -0.198 1.198 23 H -0.191 1.191 24 C 0.162 3.838 25 O -0.220 6.220 26 C -0.083 4.083 27 C -0.278 4.278 28 H 0.142 0.858 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.185 0.815 32 H 0.166 0.834 33 H 0.247 0.753 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.130 0.870 41 H 0.092 0.908 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.675 -19.655 -1.824 20.285 hybrid contribution -0.940 0.362 0.197 1.026 sum -5.615 -19.292 -1.627 20.158 Atomic orbital electron populations 1.23506 0.75579 1.06123 1.02954 1.86022 1.24164 1.25957 1.87136 1.18985 0.91414 0.85002 0.89825 1.21105 1.02031 0.90704 1.12329 1.20913 0.91252 0.99432 0.90921 1.19259 0.94275 0.90520 1.19636 1.18489 0.86836 0.84521 0.76655 1.90720 1.14824 1.87462 1.51108 1.42743 1.10521 1.03551 1.71216 1.18002 0.97360 0.87003 1.04886 1.20837 0.95495 0.96788 0.99842 1.20677 1.01465 0.93555 1.08096 1.20771 0.96043 0.98149 0.99358 1.21203 0.94578 0.98749 1.03816 1.17811 0.93622 0.91396 0.90798 1.19522 0.98530 0.99330 1.34708 0.90345 1.26743 1.04588 0.93678 0.93028 1.69859 1.37358 1.02544 1.36806 0.85089 0.76072 0.79859 0.78287 1.17498 1.19813 1.19129 1.18828 0.83213 0.92164 0.89607 1.86395 1.14773 1.34508 1.86361 1.23472 0.97516 0.84483 1.02820 1.20452 0.93367 0.96940 1.17090 0.85765 0.91213 0.91054 0.81472 0.83417 0.75319 0.87591 0.86692 0.86871 0.86488 0.90522 0.90958 0.87017 0.90771 0.82081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.80 113.37 1.11 1.22 16 2 O -0.32 -5.65 10.48 -90.28 -0.95 -6.59 16 3 C 0.20 4.23 6.69 22.61 0.15 4.38 16 4 C -0.24 -5.06 8.96 22.10 0.20 -4.86 16 5 C -0.01 -0.17 9.48 22.27 0.21 0.04 16 6 C -0.23 -8.05 5.89 -20.00 -0.12 -8.17 16 7 C 0.54 23.82 7.59 86.61 0.66 24.48 16 8 O -0.56 -28.33 12.56 16.82 0.21 -28.12 16 9 N -0.64 -28.33 4.90 -305.36 -1.50 -29.83 16 10 C 0.02 1.14 6.34 38.91 0.25 1.39 16 11 C -0.11 -5.63 8.69 22.37 0.19 -5.44 16 12 C -0.22 -10.59 10.04 22.41 0.22 -10.36 16 13 C -0.12 -6.12 9.96 22.00 0.22 -5.90 16 14 C -0.16 -8.83 8.61 22.46 0.19 -8.63 16 15 C 0.07 3.66 5.56 -21.17 -0.12 3.54 16 16 C -0.49 -25.25 8.22 23.38 0.19 -25.06 16 17 H 0.08 3.84 7.63 -2.91 -0.02 3.82 16 18 C 0.03 1.57 5.42 85.26 0.46 2.03 16 19 N -0.84 -42.88 10.62 21.83 0.23 -42.65 16 20 Si 0.99 36.39 29.56 68.60 2.03 38.41 16 21 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 22 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 23 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 24 C 0.21 6.64 6.70 22.84 0.15 6.79 16 25 O -0.31 -10.30 8.57 -68.69 -0.59 -10.89 16 26 C 0.01 0.23 9.81 113.37 1.11 1.34 16 27 C -0.26 -6.27 8.97 22.44 0.20 -6.06 16 28 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.54 7.65 -2.39 -0.02 0.53 16 30 H 0.07 0.53 7.65 -2.39 -0.02 0.51 16 31 H 0.17 2.29 6.26 -2.91 -0.02 2.27 16 32 H 0.15 3.56 6.40 -2.91 -0.02 3.54 16 33 H 0.41 16.01 6.12 -92.71 -0.57 15.44 16 34 H 0.11 5.50 6.19 -2.91 -0.02 5.48 16 35 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 36 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 37 H 0.12 6.53 6.16 -2.91 -0.02 6.51 16 38 H 0.28 13.21 8.30 -92.71 -0.77 12.44 16 39 H 0.07 1.20 7.68 -2.39 -0.02 1.18 16 40 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.07 1.19 7.65 -2.38 -0.02 1.18 16 42 H 0.16 3.07 6.31 -2.91 -0.02 3.05 16 Total: -1.00 -72.09 351.12 5.25 -66.84 By element: Atomic # 1 Polarization: 41.58 SS G_CDS: 0.51 Total: 42.09 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 5.29 Total: -29.27 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -1.26 Total: -72.48 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: -1.32 Total: -45.60 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.41 kcal Total: -72.09 5.25 -66.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339170760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.995 kcal (2) G-P(sol) polarization free energy of solvation -72.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds