Wall clock time and date at job start Tue Mar 31 2020 14:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35984 * 116.99764 * 2 1 4 4 C 1.38699 * 119.99707 * 180.02562 * 3 2 1 5 5 C 1.38134 * 119.99601 * 180.02562 * 4 3 2 6 6 C 1.38694 * 120.00180 * 0.02562 * 5 4 3 7 7 O 1.35989 * 120.00052 * 179.97438 * 6 5 4 8 8 C 1.42896 * 117.00189 * 179.97438 * 7 6 5 9 9 C 1.50693 * 109.47069 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00369 * 0.02562 * 9 8 7 11 11 N 1.34786 * 120.00039 * 179.97438 * 9 8 7 12 12 C 1.39120 * 119.99860 * 184.37270 * 11 9 8 13 13 C 1.38647 * 120.28887 * 325.34680 * 12 11 9 14 14 C 1.38223 * 120.03661 * 180.26219 * 13 12 11 15 15 C 1.38864 * 120.61570 * 359.73851 * 14 13 12 16 16 C 1.36475 * 120.57506 * 0.02562 * 15 14 13 17 17 C 1.40732 * 119.94463 * 359.97438 * 16 15 14 18 18 C 1.41067 * 120.30097 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00158 * 154.83018 * 18 17 16 20 20 C 1.39960 * 120.00035 * 334.81866 * 18 17 16 21 21 N 1.30850 * 120.00172 * 334.82627 * 20 18 17 22 22 Si 1.86797 * 119.99964 * 154.81633 * 20 18 17 23 23 H 1.48493 * 109.47433 * 180.02562 * 22 20 18 24 24 H 1.48507 * 109.47399 * 300.00688 * 22 20 18 25 25 H 1.48501 * 109.46727 * 60.00450 * 22 20 18 26 26 C 1.38696 * 120.00344 * 0.24279 * 6 5 4 27 27 C 1.38133 * 119.99271 * 359.50142 * 26 6 5 28 28 H 1.09002 * 109.47619 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47249 * 299.99649 * 1 2 3 30 30 H 1.08997 * 109.47429 * 59.99549 * 1 2 3 31 31 H 1.07999 * 120.00332 * 359.97438 * 4 3 2 32 32 H 1.08006 * 119.99533 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.46992 * 59.99737 * 8 7 6 34 34 H 1.08999 * 109.47382 * 300.00090 * 8 7 6 35 35 H 0.96996 * 119.99503 * 4.37567 * 11 9 8 36 36 H 1.08002 * 119.97971 * 359.97438 * 13 12 11 37 37 H 1.07995 * 119.69606 * 179.76870 * 14 13 12 38 38 H 1.07997 * 119.71651 * 180.02562 * 15 14 13 39 39 H 1.08000 * 120.02277 * 180.02562 * 16 15 14 40 40 H 0.97005 * 119.99936 * 354.62807 * 21 20 18 41 41 H 1.07993 * 120.00513 * 179.72862 * 26 6 5 42 42 H 1.08011 * 119.99610 * 180.22583 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4314 1.2842 -0.0005 5 6 4.0584 2.5150 0.0000 6 6 3.3030 3.6782 0.0016 7 8 3.9203 4.8899 0.0027 8 6 3.0804 6.0460 0.0037 9 6 3.9346 7.2874 0.0054 10 8 5.1436 7.1917 0.0052 11 7 3.3549 8.5043 0.0061 12 6 4.1404 9.6490 -0.0842 13 6 5.3917 9.6872 0.5118 14 6 6.1655 10.8291 0.4234 15 6 5.7047 11.9442 -0.2639 16 6 4.4790 11.9323 -0.8639 17 6 3.6713 10.7823 -0.7890 18 6 2.4029 10.7620 -1.4060 19 1 1.9644 9.8224 -1.7083 20 6 1.7125 11.9594 -1.6261 21 7 1.9529 13.0014 -0.8721 22 14 0.4480 12.0700 -2.9966 23 1 -0.1370 13.4346 -3.0215 24 1 1.1037 11.7891 -4.2991 25 1 -0.6277 11.0741 -2.7590 26 6 1.9180 3.6057 0.0078 27 6 1.2909 2.3749 0.0019 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 4.0196 0.3785 -0.0005 32 1 5.1370 2.5716 0.0000 33 1 2.4511 6.0370 0.8938 34 1 2.4511 6.0387 -0.8862 35 1 2.3902 8.5818 0.0696 36 1 5.7600 8.8259 1.0493 37 1 7.1378 10.8542 0.8929 38 1 6.3215 12.8287 -0.3242 39 1 4.1296 12.8045 -1.3965 40 1 2.5510 12.9228 -0.1125 41 1 1.3298 4.5113 0.0135 42 1 0.2123 2.3183 0.0030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344369071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:08 Heat of formation + Delta-G solvation = -62.240926 kcal Electronic energy + Delta-G solvation = -26084.926541 eV Core-core repulsion = 22188.560095 eV Total energy + Delta-G solvation = -3896.366446 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.66813 -39.80792 -38.91103 -37.41085 -36.34117 -34.03751 -33.87106 -31.45152 -30.26436 -29.42675 -29.10370 -27.58782 -27.14857 -25.10351 -23.11565 -22.20010 -21.60626 -20.95859 -19.61984 -18.68652 -18.12357 -17.84981 -17.22103 -16.33553 -16.25249 -15.96281 -15.93984 -15.02019 -14.84328 -14.53101 -14.42134 -14.12328 -13.96606 -13.59167 -13.43522 -13.11707 -12.82891 -12.71122 -12.58849 -12.29488 -12.04937 -11.95145 -11.76706 -11.47372 -11.08831 -10.97747 -10.74390 -10.61648 -10.49202 -10.36446 -9.76625 -9.41843 -9.30543 -9.12051 -8.93477 -7.92936 -7.67675 -7.45301 -7.03883 -4.54668 1.02857 1.26490 2.45906 2.72486 2.75781 3.04363 3.07305 3.16843 3.22959 3.28151 3.52423 3.91362 4.00608 4.47793 4.49284 4.55070 4.77762 4.82574 4.82742 4.98536 5.04989 5.09844 5.13276 5.23759 5.27948 5.41155 5.63727 5.81411 6.04204 6.11370 6.16636 6.27547 6.34538 6.43428 6.74679 6.88829 7.04516 7.07152 7.28312 7.31776 7.46384 7.65685 7.69903 7.85989 7.95348 8.15028 8.25001 8.58635 8.69967 8.85083 9.93965 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014660 B = 0.002594 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.494977 B =10792.828269 C =12486.661126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.084 3.916 4 C -0.110 4.110 5 C -0.110 4.110 6 C 0.100 3.900 7 O -0.287 6.287 8 C 0.044 3.956 9 C 0.499 3.501 10 O -0.517 6.517 11 N -0.631 5.631 12 C 0.004 3.996 13 C -0.071 4.071 14 C -0.240 4.240 15 C -0.090 4.090 16 C -0.208 4.208 17 C 0.092 3.908 18 C -0.526 4.526 19 H 0.074 0.926 20 C 0.041 3.959 21 N -0.793 5.793 22 Si 1.064 2.936 23 H -0.273 1.273 24 H -0.275 1.275 25 H -0.276 1.276 26 C -0.172 4.172 27 C -0.167 4.167 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.403 0.597 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.301 0.699 41 H 0.133 0.867 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.649 -18.186 1.627 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.040 3.960 4 C -0.129 4.129 5 C -0.128 4.128 6 C 0.054 3.946 7 O -0.199 6.199 8 C -0.035 4.035 9 C 0.284 3.716 10 O -0.393 6.393 11 N -0.275 5.275 12 C -0.090 4.090 13 C -0.091 4.091 14 C -0.260 4.260 15 C -0.109 4.109 16 C -0.228 4.228 17 C 0.088 3.912 18 C -0.554 4.554 19 H 0.092 0.908 20 C -0.182 4.182 21 N -0.416 5.416 22 Si 0.887 3.113 23 H -0.198 1.198 24 H -0.200 1.200 25 H -0.202 1.202 26 C -0.191 4.191 27 C -0.185 4.185 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.239 0.761 36 H 0.129 0.871 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.151 0.849 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.545 -17.335 0.889 18.551 hybrid contribution 0.027 -0.758 0.762 1.075 sum -6.517 -18.093 1.652 19.302 Atomic orbital electron populations 1.23025 0.78619 1.03803 1.01294 1.86065 1.21150 1.26749 1.89414 1.18899 0.92320 0.84181 1.00633 1.20225 0.91302 0.97795 1.03557 1.20284 1.00588 0.88826 1.03123 1.18999 0.91019 0.85633 0.98900 1.86192 1.34024 1.11034 1.88656 1.22480 0.93252 0.84284 1.03478 1.19933 0.88841 0.84094 0.78736 1.90697 1.14060 1.86290 1.48254 1.42613 1.10421 1.03683 1.70791 1.17546 0.95128 0.88643 1.07649 1.20716 0.93629 0.97082 0.97682 1.20275 1.00558 0.94827 1.10340 1.20419 0.95825 0.96680 0.97957 1.20758 0.95293 0.99777 1.06923 1.17477 0.93611 0.90826 0.89272 1.20320 1.02166 0.96515 1.36368 0.90778 1.26977 0.99810 0.91455 0.99954 1.70469 1.27472 1.32175 1.11456 0.83644 0.75129 0.77325 0.75156 1.19812 1.19998 1.20183 1.21106 0.93351 0.98621 1.06031 1.21017 0.99996 0.91635 1.05884 0.88357 0.92755 0.92736 0.84458 0.84145 0.89367 0.89103 0.76146 0.87088 0.88885 0.89082 0.87288 0.88539 0.84942 0.85197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.15 10.50 -19.69 -0.21 -3.36 16 3 C 0.08 0.90 6.69 -39.24 -0.26 0.64 16 4 C -0.11 -1.17 9.98 -39.45 -0.39 -1.56 16 5 C -0.11 -1.29 9.98 -39.45 -0.39 -1.69 16 6 C 0.10 1.31 6.69 -39.24 -0.26 1.05 16 7 O -0.29 -4.47 9.67 -39.62 -0.38 -4.85 16 8 C 0.04 0.61 5.22 36.00 0.19 0.80 16 9 C 0.50 9.44 7.75 -10.98 -0.09 9.36 16 10 O -0.52 -11.91 13.91 -14.35 -0.20 -12.11 16 11 N -0.63 -12.41 4.90 -9.48 -0.05 -12.46 16 12 C 0.00 0.08 6.33 -83.17 -0.53 -0.44 16 13 C -0.07 -1.69 8.69 -39.44 -0.34 -2.04 16 14 C -0.24 -5.52 10.04 -39.36 -0.39 -5.92 16 15 C -0.09 -2.08 9.97 -39.99 -0.40 -2.48 16 16 C -0.21 -5.16 7.87 -39.28 -0.31 -5.47 16 17 C 0.09 2.32 5.32 -106.65 -0.57 1.75 16 18 C -0.53 -12.74 8.35 -37.86 -0.32 -13.06 16 19 H 0.07 1.70 7.39 -52.49 -0.39 1.31 16 20 C 0.04 0.96 4.95 -17.33 -0.09 0.87 16 21 N -0.79 -19.82 12.32 55.55 0.68 -19.14 16 22 Si 1.06 20.17 30.00 -169.99 -5.10 15.07 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 25 H -0.28 -4.87 7.11 56.52 0.40 -4.47 16 26 C -0.17 -1.89 9.03 -39.45 -0.36 -2.25 16 27 C -0.17 -1.66 9.03 -39.45 -0.36 -2.02 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.28 7.66 -51.93 -0.40 -0.11 16 30 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 31 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.09 0.96 7.65 -51.93 -0.40 0.56 16 34 H 0.09 1.05 7.67 -51.93 -0.40 0.65 16 35 H 0.40 6.86 7.95 -40.82 -0.32 6.54 16 36 H 0.11 2.64 6.20 -52.49 -0.33 2.31 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.11 2.77 6.45 -52.49 -0.34 2.43 16 40 H 0.30 7.74 6.62 -40.82 -0.27 7.47 16 41 H 0.13 1.20 6.29 -52.49 -0.33 0.87 16 42 H 0.13 0.98 6.29 -52.48 -0.33 0.65 16 LS Contribution 356.53 15.07 5.37 5.37 Total: -1.00 -30.91 356.53 -8.56 -39.47 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -4.81 Total: 13.30 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -3.87 Total: -21.30 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.64 Total: -31.60 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.79 Total: -20.32 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.10 Total: 15.07 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.91 -8.56 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344369071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.768 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds