Wall clock time and date at job start Tue Mar 31 2020 14:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35984 * 116.99764 * 2 1 4 4 C 1.38699 * 119.99707 * 180.02562 * 3 2 1 5 5 C 1.38134 * 119.99601 * 180.02562 * 4 3 2 6 6 C 1.38694 * 120.00180 * 0.02562 * 5 4 3 7 7 O 1.35989 * 120.00052 * 179.97438 * 6 5 4 8 8 C 1.42896 * 117.00189 * 179.97438 * 7 6 5 9 9 C 1.50693 * 109.47069 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00369 * 0.02562 * 9 8 7 11 11 N 1.34786 * 120.00039 * 179.97438 * 9 8 7 12 12 C 1.39120 * 119.99860 * 184.37270 * 11 9 8 13 13 C 1.38647 * 120.28887 * 325.34680 * 12 11 9 14 14 C 1.38223 * 120.03661 * 180.26219 * 13 12 11 15 15 C 1.38864 * 120.61570 * 359.73851 * 14 13 12 16 16 C 1.36475 * 120.57506 * 0.02562 * 15 14 13 17 17 C 1.40732 * 119.94463 * 359.97438 * 16 15 14 18 18 C 1.41067 * 120.30097 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00158 * 154.83018 * 18 17 16 20 20 C 1.39960 * 120.00035 * 334.81866 * 18 17 16 21 21 N 1.30850 * 120.00172 * 334.82627 * 20 18 17 22 22 Si 1.86797 * 119.99964 * 154.81633 * 20 18 17 23 23 H 1.48493 * 109.47433 * 180.02562 * 22 20 18 24 24 H 1.48507 * 109.47399 * 300.00688 * 22 20 18 25 25 H 1.48501 * 109.46727 * 60.00450 * 22 20 18 26 26 C 1.38696 * 120.00344 * 0.24279 * 6 5 4 27 27 C 1.38133 * 119.99271 * 359.50142 * 26 6 5 28 28 H 1.09002 * 109.47619 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47249 * 299.99649 * 1 2 3 30 30 H 1.08997 * 109.47429 * 59.99549 * 1 2 3 31 31 H 1.07999 * 120.00332 * 359.97438 * 4 3 2 32 32 H 1.08006 * 119.99533 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.46992 * 59.99737 * 8 7 6 34 34 H 1.08999 * 109.47382 * 300.00090 * 8 7 6 35 35 H 0.96996 * 119.99503 * 4.37567 * 11 9 8 36 36 H 1.08002 * 119.97971 * 359.97438 * 13 12 11 37 37 H 1.07995 * 119.69606 * 179.76870 * 14 13 12 38 38 H 1.07997 * 119.71651 * 180.02562 * 15 14 13 39 39 H 1.08000 * 120.02277 * 180.02562 * 16 15 14 40 40 H 0.97005 * 119.99936 * 354.62807 * 21 20 18 41 41 H 1.07993 * 120.00513 * 179.72862 * 26 6 5 42 42 H 1.08011 * 119.99610 * 180.22583 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4314 1.2842 -0.0005 5 6 4.0584 2.5150 0.0000 6 6 3.3030 3.6782 0.0016 7 8 3.9203 4.8899 0.0027 8 6 3.0804 6.0460 0.0037 9 6 3.9346 7.2874 0.0054 10 8 5.1436 7.1917 0.0052 11 7 3.3549 8.5043 0.0061 12 6 4.1404 9.6490 -0.0842 13 6 5.3917 9.6872 0.5118 14 6 6.1655 10.8291 0.4234 15 6 5.7047 11.9442 -0.2639 16 6 4.4790 11.9323 -0.8639 17 6 3.6713 10.7823 -0.7890 18 6 2.4029 10.7620 -1.4060 19 1 1.9644 9.8224 -1.7083 20 6 1.7125 11.9594 -1.6261 21 7 1.9529 13.0014 -0.8721 22 14 0.4480 12.0700 -2.9966 23 1 -0.1370 13.4346 -3.0215 24 1 1.1037 11.7891 -4.2991 25 1 -0.6277 11.0741 -2.7590 26 6 1.9180 3.6057 0.0078 27 6 1.2909 2.3749 0.0019 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 4.0196 0.3785 -0.0005 32 1 5.1370 2.5716 0.0000 33 1 2.4511 6.0370 0.8938 34 1 2.4511 6.0387 -0.8862 35 1 2.3902 8.5818 0.0696 36 1 5.7600 8.8259 1.0493 37 1 7.1378 10.8542 0.8929 38 1 6.3215 12.8287 -0.3242 39 1 4.1296 12.8045 -1.3965 40 1 2.5510 12.9228 -0.1125 41 1 1.3298 4.5113 0.0135 42 1 0.2123 2.3183 0.0030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344369071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:07 Heat of formation + Delta-G solvation = -79.340238 kcal Electronic energy + Delta-G solvation = -26085.668023 eV Core-core repulsion = 22188.560095 eV Total energy + Delta-G solvation = -3897.107927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.68609 -41.10820 -39.98135 -39.04262 -37.25326 -35.81168 -35.59004 -32.26393 -31.49072 -31.22773 -30.32856 -28.75912 -27.88491 -26.91063 -24.15573 -23.35499 -22.94663 -22.57828 -21.21807 -19.88668 -19.54648 -18.74697 -18.60015 -17.60358 -17.44236 -17.22405 -16.61602 -16.57521 -16.04725 -15.83189 -15.69151 -15.60410 -15.06688 -14.81995 -14.57366 -14.33923 -14.19694 -14.02982 -13.86170 -13.61234 -13.40587 -13.27382 -12.70134 -12.65240 -12.50025 -12.45148 -12.16770 -11.95203 -11.71659 -11.50685 -11.43131 -11.11914 -10.84571 -10.64093 -10.10533 -9.56570 -9.30720 -8.85358 -8.77164 -6.42366 0.23294 0.42036 0.71592 0.90590 1.51891 1.55107 1.66036 1.70149 1.82651 2.34598 2.40748 2.69862 2.70330 2.75559 3.51332 3.57484 3.80488 3.81884 3.97247 4.06587 4.17252 4.31936 4.38589 4.39614 4.43279 4.45887 4.50541 4.66820 4.76621 4.87551 4.93380 5.01638 5.05500 5.25100 5.26547 5.29545 5.47332 5.53826 5.65643 5.77691 5.88657 6.00746 6.10948 6.24583 6.32806 6.48043 6.58598 6.81555 6.90592 7.25540 8.05695 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014660 B = 0.002594 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.494977 B =10792.828269 C =12486.661126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.081 3.919 4 C -0.117 4.117 5 C -0.122 4.122 6 C 0.073 3.927 7 O -0.318 6.318 8 C 0.054 3.946 9 C 0.497 3.503 10 O -0.564 6.564 11 N -0.628 5.628 12 C -0.001 4.001 13 C -0.088 4.088 14 C -0.243 4.243 15 C -0.094 4.094 16 C -0.227 4.227 17 C 0.066 3.934 18 C -0.541 4.541 19 H 0.085 0.915 20 C 0.007 3.993 21 N -0.813 5.813 22 Si 1.114 2.886 23 H -0.277 1.277 24 H -0.271 1.271 25 H -0.249 1.249 26 C -0.170 4.170 27 C -0.166 4.166 28 H 0.117 0.883 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.151 0.849 32 H 0.139 0.861 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.416 0.584 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.286 0.714 41 H 0.154 0.846 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.977 -19.802 1.193 21.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.036 3.964 4 C -0.136 4.136 5 C -0.140 4.140 6 C 0.029 3.971 7 O -0.232 6.232 8 C -0.024 4.024 9 C 0.285 3.715 10 O -0.442 6.442 11 N -0.273 5.273 12 C -0.095 4.095 13 C -0.108 4.108 14 C -0.263 4.263 15 C -0.113 4.113 16 C -0.247 4.247 17 C 0.062 3.938 18 C -0.568 4.568 19 H 0.103 0.897 20 C -0.210 4.210 21 N -0.436 5.436 22 Si 0.932 3.068 23 H -0.202 1.202 24 H -0.196 1.196 25 H -0.173 1.173 26 C -0.189 4.189 27 C -0.185 4.185 28 H 0.136 0.864 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.169 0.831 32 H 0.157 0.843 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.254 0.746 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.172 0.828 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.900 -18.986 0.477 20.974 hybrid contribution 0.790 -0.389 0.948 1.294 sum -8.110 -19.376 1.425 21.053 Atomic orbital electron populations 1.23331 0.76613 1.05534 1.02212 1.86055 1.23278 1.26373 1.89184 1.19097 0.92508 0.84931 0.99907 1.20406 0.91921 0.97831 1.03394 1.20418 1.00802 0.89245 1.03569 1.19212 0.92158 0.84759 1.00994 1.86126 1.35454 1.12077 1.89525 1.22460 0.91978 0.81519 1.06451 1.20833 0.88819 0.85116 0.76765 1.90669 1.16435 1.87016 1.50116 1.42591 1.10805 1.03147 1.70715 1.17716 0.95441 0.89662 1.06660 1.20881 0.94224 0.97397 0.98340 1.20598 1.01410 0.94422 1.09882 1.20667 0.95563 0.97687 0.97360 1.20802 0.96281 0.99688 1.07962 1.17806 0.94467 0.91462 0.90082 1.20542 1.02124 0.97406 1.36767 0.89698 1.28336 1.00897 0.90779 1.00990 1.70576 1.28256 1.32922 1.11853 0.83020 0.73623 0.77761 0.72411 1.20213 1.19614 1.17285 1.21347 0.92523 0.99936 1.05091 1.21319 1.01372 0.90920 1.04854 0.86430 0.91739 0.91796 0.83091 0.84307 0.85836 0.86263 0.74626 0.87399 0.86610 0.86596 0.88557 0.90144 0.82834 0.82527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.85 10.50 -93.37 -0.98 -6.83 16 3 C 0.08 1.56 6.69 22.49 0.15 1.71 16 4 C -0.12 -2.37 9.98 22.36 0.22 -2.15 16 5 C -0.12 -2.84 9.98 22.35 0.22 -2.62 16 6 C 0.07 1.84 6.69 22.49 0.15 1.99 16 7 O -0.32 -9.69 9.67 -74.39 -0.72 -10.41 16 8 C 0.05 1.39 5.22 71.23 0.37 1.76 16 9 C 0.50 18.55 7.75 87.65 0.68 19.23 16 10 O -0.56 -26.35 13.91 16.01 0.22 -26.12 16 11 N -0.63 -24.36 4.90 -302.28 -1.48 -25.84 16 12 C 0.00 -0.03 6.33 38.88 0.25 0.22 16 13 C -0.09 -4.26 8.69 22.36 0.19 -4.07 16 14 C -0.24 -11.19 10.04 22.42 0.22 -10.97 16 15 C -0.09 -4.36 9.97 22.01 0.22 -4.14 16 16 C -0.23 -11.54 7.87 22.47 0.18 -11.36 16 17 C 0.07 3.36 5.32 -21.18 -0.11 3.24 16 18 C -0.54 -26.10 8.35 23.38 0.20 -25.91 16 19 H 0.08 3.79 7.39 -2.91 -0.02 3.77 16 20 C 0.01 0.35 4.95 85.26 0.42 0.77 16 21 N -0.81 -41.16 12.32 21.83 0.27 -40.89 16 22 Si 1.11 39.42 30.00 68.60 2.06 41.47 16 23 H -0.28 -9.91 7.11 99.48 0.71 -9.21 16 24 H -0.27 -9.38 7.11 99.48 0.71 -8.68 16 25 H -0.25 -7.69 7.11 99.48 0.71 -6.99 16 26 C -0.17 -3.30 9.03 22.35 0.20 -3.10 16 27 C -0.17 -2.84 9.03 22.35 0.20 -2.64 16 28 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.47 7.66 -2.39 -0.02 0.45 16 30 H 0.06 0.47 7.66 -2.39 -0.02 0.45 16 31 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 33 H 0.12 2.29 7.65 -2.38 -0.02 2.28 16 34 H 0.12 2.39 7.67 -2.39 -0.02 2.37 16 35 H 0.42 13.65 7.95 -92.71 -0.74 12.91 16 36 H 0.11 5.24 6.20 -2.91 -0.02 5.22 16 37 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 38 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 39 H 0.10 5.04 6.45 -2.91 -0.02 5.03 16 40 H 0.29 15.16 6.62 -92.70 -0.61 14.54 16 41 H 0.15 2.20 6.29 -2.91 -0.02 2.18 16 42 H 0.16 1.75 6.29 -2.91 -0.02 1.73 16 Total: -1.00 -68.66 356.53 4.74 -63.92 By element: Atomic # 1 Polarization: 40.98 SS G_CDS: 0.49 Total: 41.46 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 4.88 Total: -36.76 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: -1.21 Total: -66.74 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -1.48 Total: -43.37 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.06 Total: 41.47 kcal Total: -68.66 4.74 -63.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344369071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.419 kcal (2) G-P(sol) polarization free energy of solvation -68.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds