Wall clock time and date at job start Tue Mar 31 2020 14:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00141 * 2 1 4 4 C 1.53001 * 109.47516 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46771 * 65.00201 * 4 3 2 6 6 C 1.39677 * 119.99883 * 84.99897 * 5 4 3 7 7 C 1.38911 * 120.07172 * 62.71960 * 6 5 4 8 8 C 1.38109 * 119.92275 * 179.97438 * 7 6 5 9 9 C 1.38282 * 120.07802 * 359.97438 * 8 7 6 10 10 C 1.38291 * 120.14719 * 0.02562 * 9 8 7 11 11 C 1.38104 * 120.07477 * 0.02562 * 10 9 8 12 12 S 1.65603 * 120.00334 * 265.00108 * 5 4 3 13 13 O 1.42103 * 104.27147 * 20.14613 * 12 5 4 14 14 O 1.42098 * 104.27690 * 148.00489 * 12 5 4 15 15 C 1.81394 * 104.44769 * 264.08078 * 12 5 4 16 16 C 1.53004 * 109.47225 * 180.02562 * 15 12 5 17 17 C 1.52994 * 109.47163 * 179.97438 * 16 15 12 18 18 C 1.50706 * 109.46890 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00017 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99840 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00070 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99779 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47197 * 59.99913 * 22 20 18 24 24 H 1.48501 * 109.47104 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47008 * 299.99922 * 22 20 18 26 26 H 1.08998 * 109.47077 * 299.99667 * 1 2 3 27 27 H 1.09003 * 109.46836 * 60.00041 * 1 2 3 28 28 H 1.09006 * 109.46771 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46609 * 59.99716 * 3 2 1 30 30 H 1.08998 * 109.47112 * 300.00445 * 3 2 1 31 31 H 1.08995 * 109.47012 * 305.00661 * 4 3 2 32 32 H 1.08995 * 109.46986 * 185.00051 * 4 3 2 33 33 H 1.08002 * 120.03936 * 359.69708 * 7 6 5 34 34 H 1.08001 * 119.96147 * 179.97438 * 8 7 6 35 35 H 1.07990 * 119.92799 * 179.97438 * 9 8 7 36 36 H 1.07998 * 119.96507 * 180.02562 * 10 9 8 37 37 H 1.07998 * 120.03718 * 179.97438 * 11 10 9 38 38 H 1.09002 * 109.46916 * 299.99213 * 15 12 5 39 39 H 1.08995 * 109.47827 * 59.99208 * 15 12 5 40 40 H 1.09002 * 109.46483 * 299.99419 * 16 15 12 41 41 H 1.09000 * 109.46791 * 59.99240 * 16 15 12 42 42 H 1.09002 * 109.47010 * 299.99174 * 17 16 15 43 43 H 1.08991 * 109.47854 * 59.99707 * 17 16 15 44 44 H 0.96996 * 119.99499 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1731 1.3499 -2.3888 7 6 5.1429 2.3444 -2.3890 8 6 5.3349 3.1193 -3.5160 9 6 4.5634 2.9057 -4.6436 10 6 3.5971 1.9164 -4.6468 11 6 3.3992 1.1386 -3.5229 12 16 4.2424 -1.0692 -1.3167 13 8 3.5166 -1.5870 -0.2102 14 8 3.9008 -1.4265 -2.6489 15 6 6.0273 -1.2485 -1.0471 16 6 6.4026 -2.7313 -1.0863 17 6 7.9081 -2.8824 -0.8596 18 6 8.2776 -4.3430 -0.8976 19 1 7.5148 -5.0888 -1.0662 20 6 9.5895 -4.7271 -0.7172 21 7 10.5184 -3.8189 -0.5125 22 14 10.0474 -6.5375 -0.7636 23 1 9.6859 -7.1058 -2.0871 24 1 11.5088 -6.6842 -0.5450 25 1 9.3115 -7.2617 0.3037 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6885 1.8463 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8508 0.5685 0.8426 32 1 3.9784 2.1765 0.0902 33 1 5.7430 2.5145 -1.5073 34 1 6.0884 3.8930 -3.5166 35 1 4.7153 3.5133 -5.5233 36 1 2.9965 1.7518 -5.5292 37 1 2.6441 0.3665 -3.5259 38 1 6.5681 -0.7165 -1.8298 39 1 6.2917 -0.8319 -0.0753 40 1 5.8617 -3.2637 -0.3039 41 1 6.1382 -3.1474 -2.0585 42 1 8.4486 -2.3501 -1.6423 43 1 8.1728 -2.4663 0.1123 44 1 11.4412 -4.0892 -0.3853 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451937713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:29 Heat of formation + Delta-G solvation = -92.856340 kcal Electronic energy + Delta-G solvation = -26348.569013 eV Core-core repulsion = 22586.318934 eV Total energy + Delta-G solvation = -3762.250078 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.68843 -38.05533 -36.74301 -35.87881 -35.53203 -34.62390 -32.15522 -31.06824 -30.87347 -28.50737 -27.73973 -26.31192 -23.69896 -23.39039 -22.73346 -21.82120 -20.49285 -19.03679 -17.79500 -17.24179 -16.66382 -16.47908 -16.18707 -15.98752 -15.50278 -15.21501 -14.99164 -14.76214 -14.45286 -14.33232 -13.97733 -13.52064 -13.14713 -12.83267 -12.65795 -12.54225 -12.24108 -12.14868 -11.99340 -11.82715 -11.66592 -11.59879 -11.44126 -11.40938 -11.16538 -10.98095 -10.87480 -10.82795 -10.37747 -9.91571 -9.83068 -9.74162 -9.35837 -9.12731 -9.03594 -8.50216 -8.38081 -6.03242 -4.06246 0.42957 1.18836 1.30447 2.71866 3.34052 3.37561 3.41058 3.61230 3.68856 4.14327 4.41130 4.44559 4.68983 4.81481 4.85656 4.88347 4.94234 5.03381 5.14988 5.17475 5.23597 5.26839 5.29859 5.31582 5.33229 5.39692 5.51610 5.57361 5.62260 5.81826 5.93820 5.95671 6.21766 6.30922 6.39530 6.43201 6.48793 6.54779 6.90475 7.00108 7.11438 7.59555 7.69966 7.94817 8.35494 8.99696 9.58199 11.08024 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013582 B = 0.003445 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.085413 B = 8125.490163 C = 9370.001411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.040 3.960 4 C 0.125 3.875 5 N -0.950 5.950 6 C 0.137 3.863 7 C -0.123 4.123 8 C -0.114 4.114 9 C -0.121 4.121 10 C -0.112 4.112 11 C -0.101 4.101 12 S 2.590 3.410 13 O -0.929 6.929 14 O -0.953 6.953 15 C -0.612 4.612 16 C -0.104 4.104 17 C 0.031 3.969 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.058 3.942 21 N -0.896 5.896 22 Si 0.895 3.105 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.275 1.275 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.805 18.288 -2.454 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.039 4.039 4 C 0.001 3.999 5 N -0.779 5.779 6 C 0.043 3.957 7 C -0.144 4.144 8 C -0.133 4.133 9 C -0.140 4.140 10 C -0.131 4.131 11 C -0.121 4.121 12 S 2.688 3.312 13 O -0.919 6.919 14 O -0.944 6.944 15 C -0.743 4.743 16 C -0.143 4.143 17 C -0.007 4.007 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.535 5.535 22 Si 0.722 3.278 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.152 0.848 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.210 17.471 -2.496 24.650 hybrid contribution 0.827 -0.317 0.110 0.892 sum -16.383 17.154 -2.386 23.840 Atomic orbital electron populations 1.22741 0.81733 1.02831 0.99355 1.88178 1.18930 1.26112 1.95201 1.22983 0.94357 0.86105 1.00455 1.21452 0.92812 1.00245 0.85363 1.55603 1.80585 1.26886 1.14778 1.17399 0.96170 0.95025 0.87082 1.21321 0.97173 0.96578 0.99288 1.21026 0.99642 0.99653 0.92956 1.21210 0.96242 0.98255 0.98288 1.21082 0.98530 0.95546 0.97920 1.21546 0.98511 0.99060 0.93016 1.05938 0.78269 0.72124 0.74857 1.93627 1.68678 1.75818 1.53816 1.93557 1.82577 1.80601 1.37634 1.30623 1.23853 1.08551 1.11282 1.21486 1.03409 0.87527 1.01924 1.19055 0.86973 0.97203 0.97469 1.21227 0.93407 0.92364 1.49477 0.92410 1.25017 0.96516 0.97703 0.95101 1.69951 1.01309 1.33116 1.49109 0.86614 0.77245 0.85190 0.78742 1.20108 1.21241 1.20095 0.94332 0.94538 0.89585 0.92336 0.93008 0.88247 0.88718 0.85435 0.85687 0.85960 0.85667 0.84839 0.85651 0.85570 0.91592 0.91687 0.96139 0.96131 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.37 -4.96 8.79 -54.53 -0.48 -5.43 16 3 C 0.04 0.40 6.26 37.16 0.23 0.64 16 4 C 0.13 1.27 5.71 -4.04 -0.02 1.25 16 5 N -0.95 -12.10 2.71 -58.63 -0.16 -12.26 16 6 C 0.14 1.68 5.28 -83.79 -0.44 1.24 16 7 C -0.12 -1.27 9.48 -39.38 -0.37 -1.64 16 8 C -0.11 -1.06 10.04 -39.61 -0.40 -1.46 16 9 C -0.12 -1.12 10.04 -39.55 -0.40 -1.52 16 10 C -0.11 -1.18 10.04 -39.61 -0.40 -1.57 16 11 C -0.10 -1.28 8.69 -39.38 -0.34 -1.62 16 12 S 2.59 42.29 5.32 -107.50 -0.57 41.72 16 13 O -0.93 -17.11 14.98 -65.46 -0.98 -18.09 16 14 O -0.95 -17.89 15.53 -57.54 -0.89 -18.78 16 15 C -0.61 -10.27 6.18 37.16 0.23 -10.04 16 16 C -0.10 -2.22 5.16 -26.73 -0.14 -2.35 16 17 C 0.03 0.82 4.97 -27.88 -0.14 0.68 16 18 C -0.53 -15.12 9.11 -34.44 -0.31 -15.44 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 22 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 1.02 7.43 -51.93 -0.39 0.63 16 32 H 0.09 0.66 7.74 -51.93 -0.40 0.26 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.13 1.83 7.20 -52.49 -0.38 1.46 16 38 H 0.13 1.97 8.14 -51.92 -0.42 1.55 16 39 H 0.13 1.86 8.14 -51.93 -0.42 1.44 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -35.81 379.10 -10.19 -46.00 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.05 Total: -0.68 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: -1.49 Total: -28.84 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.58 Total: -38.43 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -2.35 Total: -42.31 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 42.29 SS G_CDS: -0.57 Total: 41.72 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.81 -10.19 -46.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451937713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.854 kcal (2) G-P(sol) polarization free energy of solvation -35.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds