Wall clock time and date at job start Tue Mar 31 2020 14:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00199 * 2 1 4 4 C 1.52999 * 109.46954 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47414 * 64.99716 * 4 3 2 6 6 C 1.36918 * 120.00144 * 289.24840 * 5 4 3 7 7 H 1.07997 * 119.99368 * 39.67897 * 6 5 4 8 8 C 1.39010 * 120.00016 * 219.67401 * 6 5 4 9 9 N 1.31386 * 119.99864 * 28.43660 * 8 6 5 10 10 Si 1.86794 * 120.00089 * 208.43214 * 8 6 5 11 11 H 1.48506 * 109.47025 * 94.96557 * 10 8 6 12 12 H 1.48499 * 109.47320 * 214.96927 * 10 8 6 13 13 H 1.48502 * 109.47217 * 334.96976 * 10 8 6 14 14 C 1.34780 * 120.00101 * 109.24993 * 5 4 3 15 15 O 1.21636 * 120.00394 * 177.28607 * 14 5 4 16 16 C 1.47351 * 119.99902 * 357.28242 * 14 5 4 17 17 C 1.39923 * 120.10148 * 333.79400 * 16 14 5 18 18 C 1.37977 * 119.87424 * 180.02562 * 17 16 14 19 19 O 1.36038 * 119.96624 * 179.97438 * 18 17 16 20 20 C 1.42891 * 117.00155 * 2.55007 * 19 18 17 21 21 C 1.39521 * 120.06626 * 359.97438 * 18 17 16 22 22 O 1.35800 * 119.89966 * 180.02562 * 21 18 17 23 23 C 1.42898 * 117.00246 * 179.97438 * 22 21 18 24 24 C 1.38709 * 120.20122 * 0.02562 * 21 18 17 25 25 C 1.38105 * 120.13190 * 0.02562 * 24 21 18 26 26 F 1.35103 * 120.03710 * 180.02562 * 25 24 21 27 27 H 1.09002 * 109.46870 * 300.00125 * 1 2 3 28 28 H 1.09001 * 109.46902 * 59.99885 * 1 2 3 29 29 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47251 * 59.99769 * 3 2 1 31 31 H 1.09000 * 109.46881 * 299.99617 * 3 2 1 32 32 H 1.09000 * 109.47383 * 304.99719 * 4 3 2 33 33 H 1.09005 * 109.47091 * 184.99961 * 4 3 2 34 34 H 0.96998 * 119.99969 * 184.76928 * 9 8 6 35 35 H 1.08001 * 120.06481 * 0.02854 * 17 16 14 36 36 H 1.08996 * 109.47331 * 174.00272 * 20 19 18 37 37 H 1.09005 * 109.47548 * 294.00222 * 20 19 18 38 38 H 1.09006 * 109.47194 * 53.99866 * 20 19 18 39 39 H 1.08993 * 109.47161 * 300.00421 * 23 22 21 40 40 H 1.08996 * 109.46756 * 60.00081 * 23 22 21 41 41 H 1.09001 * 109.46991 * 179.97438 * 23 22 21 42 42 H 1.08001 * 119.93463 * 180.27754 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 3.7297 -0.7629 -1.4827 7 1 2.7860 -1.1964 -1.1862 8 6 4.6944 -1.5522 -2.0981 9 7 5.9676 -1.2560 -1.9657 10 14 4.1808 -3.0339 -3.1130 11 1 4.0924 -2.6470 -4.5440 12 1 5.1857 -4.1155 -2.9537 13 1 2.8557 -3.5170 -2.6481 14 6 4.6229 1.2999 -2.1781 15 8 5.0320 0.7741 -3.1958 16 6 4.8350 2.7412 -1.9571 17 6 3.9588 3.4619 -1.1381 18 6 4.1614 4.8115 -0.9347 19 8 3.3104 5.5141 -0.1393 20 6 2.2627 4.7802 0.4975 21 6 5.2382 5.4562 -1.5441 22 8 5.4348 6.7845 -1.3412 23 6 6.5566 7.3816 -1.9947 24 6 6.1086 4.7446 -2.3566 25 6 5.9129 3.3937 -2.5666 26 9 6.7622 2.7024 -3.3579 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6886 1.8463 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8515 0.5681 0.8409 33 1 3.9786 2.1764 0.0889 34 1 6.6367 -1.7643 -2.4503 35 1 3.1255 2.9628 -0.6659 36 1 1.7245 5.4354 1.1824 37 1 1.5745 4.3999 -0.2575 38 1 2.6896 3.9454 1.0533 39 1 7.4730 6.8955 -1.6603 40 1 6.4546 7.2620 -3.0733 41 1 6.5973 8.4429 -1.7494 42 1 6.9433 5.2471 -2.8226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457200476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:13 Heat of formation + Delta-G solvation = -113.040627 kcal Electronic energy + Delta-G solvation = -29730.996608 eV Core-core repulsion = 25401.658098 eV Total energy + Delta-G solvation = -4329.338511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.20443 -40.62009 -38.92267 -38.30313 -37.26290 -35.96814 -34.29456 -32.30907 -30.23723 -29.86183 -29.13535 -27.32730 -27.06671 -26.02053 -24.80615 -22.94056 -22.12291 -21.95203 -19.93163 -18.34031 -17.70425 -17.07400 -16.45141 -16.39873 -16.22038 -16.08105 -15.44183 -15.26682 -15.10026 -14.89752 -14.69829 -14.50332 -14.28846 -14.13680 -13.77549 -13.51001 -13.07260 -12.75439 -12.44677 -12.26957 -12.13149 -11.74501 -11.56988 -11.45344 -11.38110 -11.31862 -11.21276 -10.95793 -10.81951 -10.74422 -10.40816 -10.22302 -10.01375 -9.26739 -8.70386 -8.54176 -8.10403 -7.56122 -7.15295 -6.10150 -3.72317 1.16368 1.39242 3.20126 3.27859 3.39683 3.48595 3.49121 3.53684 4.13981 4.28494 4.57349 4.62276 4.78312 4.80984 5.00805 5.02567 5.09409 5.14691 5.19965 5.26328 5.32943 5.35264 5.41213 5.42915 5.48066 5.55072 5.62512 5.65684 5.75903 5.82985 5.85793 5.94369 6.18639 6.29634 6.40767 6.53236 6.83307 7.01658 7.56833 7.57229 7.81618 8.31996 9.02549 9.21188 9.66337 10.24678 10.96933 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012721 B = 0.005373 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.594635 B = 5209.553191 C = 7155.488744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.045 3.955 4 C 0.065 3.935 5 N -0.424 5.424 6 C -0.337 4.337 7 H 0.104 0.896 8 C 0.075 3.925 9 N -0.816 5.816 10 Si 0.902 3.098 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.272 1.272 14 C 0.492 3.508 15 O -0.525 6.525 16 C -0.127 4.127 17 C -0.157 4.157 18 C 0.078 3.922 19 O -0.305 6.305 20 C 0.020 3.980 21 C 0.126 3.874 22 O -0.302 6.302 23 C 0.024 3.976 24 C -0.221 4.221 25 C 0.150 3.850 26 F -0.114 7.114 27 H 0.032 0.968 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.265 0.735 35 H 0.168 0.832 36 H 0.101 0.899 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.099 0.901 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.466 14.519 5.547 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.275 6.275 3 C -0.033 4.033 4 C -0.059 4.059 5 N -0.144 5.144 6 C -0.463 4.463 7 H 0.122 0.878 8 C -0.136 4.136 9 N -0.449 5.449 10 Si 0.729 3.271 11 H -0.204 1.204 12 H -0.216 1.216 13 H -0.197 1.197 14 C 0.281 3.719 15 O -0.404 6.404 16 C -0.132 4.132 17 C -0.177 4.177 18 C 0.033 3.967 19 O -0.219 6.219 20 C -0.075 4.075 21 C 0.080 3.920 22 O -0.215 6.215 23 C -0.071 4.071 24 C -0.240 4.240 25 C 0.129 3.871 26 F -0.092 7.092 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.185 0.815 36 H 0.119 0.881 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.023 14.263 5.174 15.982 hybrid contribution -0.027 -0.753 -0.712 1.037 sum -5.049 13.509 4.462 15.097 Atomic orbital electron populations 1.22717 0.82819 1.02377 0.99022 1.88192 1.17964 1.26419 1.94950 1.23090 0.95695 0.85793 0.98687 1.22533 0.91634 1.00208 0.91540 1.43171 1.51023 1.08836 1.11383 1.19449 1.00693 0.83079 1.43063 0.87843 1.25172 0.93938 0.97487 0.97051 1.69984 1.00340 1.39910 1.34674 0.86349 0.78255 0.81021 0.81462 1.20415 1.21604 1.19659 1.17437 0.85755 0.83448 0.85309 1.90672 1.50679 1.71183 1.27848 1.20462 0.95721 0.97596 0.99456 1.22007 1.02854 0.91689 1.01103 1.18046 0.91792 0.89889 0.96950 1.86139 1.40176 1.35850 1.59738 1.23163 0.89165 0.97954 0.97211 1.17897 0.93656 0.83450 0.97040 1.86120 1.47706 1.19038 1.68683 1.23090 0.87906 0.98678 0.97441 1.20842 1.03518 0.93728 1.05941 1.17234 0.89049 0.88545 0.92321 1.91577 1.67955 1.79154 1.70551 0.94942 0.94557 0.89978 0.93755 0.93577 0.90778 0.88212 0.92498 0.81485 0.88113 0.92712 0.92529 0.92530 0.92571 0.88242 0.83609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.36 -6.50 8.32 -35.23 -0.29 -6.79 16 3 C 0.05 0.73 5.19 37.16 0.19 0.92 16 4 C 0.06 1.26 5.37 -4.04 -0.02 1.24 16 5 N -0.42 -10.73 2.61 -116.05 -0.30 -11.03 16 6 C -0.34 -9.36 8.77 -14.99 -0.13 -9.49 16 7 H 0.10 2.81 6.05 -52.49 -0.32 2.49 16 8 C 0.08 2.17 4.02 -17.46 -0.07 2.10 16 9 N -0.82 -24.82 12.02 55.50 0.67 -24.16 16 10 Si 0.90 22.57 29.64 -169.99 -5.04 17.53 16 11 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 13 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 14 C 0.49 13.04 6.86 -12.55 -0.09 12.96 16 15 O -0.52 -16.12 13.32 5.25 0.07 -16.05 16 16 C -0.13 -2.75 5.57 -104.91 -0.58 -3.33 16 17 C -0.16 -2.74 6.43 -39.05 -0.25 -2.99 16 18 C 0.08 1.26 6.69 -39.20 -0.26 1.00 16 19 O -0.31 -4.35 10.28 -34.52 -0.35 -4.70 16 20 C 0.02 0.21 9.83 101.05 0.99 1.20 16 21 C 0.13 1.98 6.71 -38.93 -0.26 1.72 16 22 O -0.30 -4.19 10.26 -33.77 -0.35 -4.54 16 23 C 0.02 0.22 9.81 101.05 0.99 1.21 16 24 C -0.22 -3.57 8.99 -39.46 -0.35 -3.92 16 25 C 0.15 3.07 7.24 -38.98 -0.28 2.79 16 26 F -0.11 -2.65 15.87 2.25 0.04 -2.61 16 27 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.04 0.54 7.88 -51.93 -0.41 0.13 16 31 H 0.05 0.73 7.33 -51.93 -0.38 0.35 16 32 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.10 1.75 3.76 -54.54 -0.21 1.55 16 34 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 35 H 0.17 2.64 1.25 -52.49 -0.07 2.57 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.52 7.88 -51.93 -0.41 0.11 16 38 H 0.06 0.54 7.13 -51.93 -0.37 0.17 16 39 H 0.06 0.48 7.65 -51.93 -0.40 0.08 16 40 H 0.06 0.48 7.65 -51.93 -0.40 0.08 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.15 1.90 6.27 -52.49 -0.33 1.57 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -36.79 346.14 -4.32 -41.11 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -4.95 Total: -0.86 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 0.98 Total: 6.89 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.36 Total: -35.19 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.92 Total: -32.09 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.04 Total: 17.53 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.79 -4.32 -41.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457200476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.935 kcal (2) G-P(sol) polarization free energy of solvation -36.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds