Wall clock time and date at job start Tue Mar 31 2020 14:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00199 * 2 1 4 4 C 1.52999 * 109.46954 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47414 * 64.99716 * 4 3 2 6 6 C 1.36918 * 120.00144 * 289.24840 * 5 4 3 7 7 H 1.07997 * 119.99368 * 39.67897 * 6 5 4 8 8 C 1.39010 * 120.00016 * 219.67401 * 6 5 4 9 9 N 1.31386 * 119.99864 * 28.43660 * 8 6 5 10 10 Si 1.86794 * 120.00089 * 208.43214 * 8 6 5 11 11 H 1.48506 * 109.47025 * 94.96557 * 10 8 6 12 12 H 1.48499 * 109.47320 * 214.96927 * 10 8 6 13 13 H 1.48502 * 109.47217 * 334.96976 * 10 8 6 14 14 C 1.34780 * 120.00101 * 109.24993 * 5 4 3 15 15 O 1.21636 * 120.00394 * 177.28607 * 14 5 4 16 16 C 1.47351 * 119.99902 * 357.28242 * 14 5 4 17 17 C 1.39923 * 120.10148 * 333.79400 * 16 14 5 18 18 C 1.37977 * 119.87424 * 180.02562 * 17 16 14 19 19 O 1.36038 * 119.96624 * 179.97438 * 18 17 16 20 20 C 1.42891 * 117.00155 * 2.55007 * 19 18 17 21 21 C 1.39521 * 120.06626 * 359.97438 * 18 17 16 22 22 O 1.35800 * 119.89966 * 180.02562 * 21 18 17 23 23 C 1.42898 * 117.00246 * 179.97438 * 22 21 18 24 24 C 1.38709 * 120.20122 * 0.02562 * 21 18 17 25 25 C 1.38105 * 120.13190 * 0.02562 * 24 21 18 26 26 F 1.35103 * 120.03710 * 180.02562 * 25 24 21 27 27 H 1.09002 * 109.46870 * 300.00125 * 1 2 3 28 28 H 1.09001 * 109.46902 * 59.99885 * 1 2 3 29 29 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47251 * 59.99769 * 3 2 1 31 31 H 1.09000 * 109.46881 * 299.99617 * 3 2 1 32 32 H 1.09000 * 109.47383 * 304.99719 * 4 3 2 33 33 H 1.09005 * 109.47091 * 184.99961 * 4 3 2 34 34 H 0.96998 * 119.99969 * 184.76928 * 9 8 6 35 35 H 1.08001 * 120.06481 * 0.02854 * 17 16 14 36 36 H 1.08996 * 109.47331 * 174.00272 * 20 19 18 37 37 H 1.09005 * 109.47548 * 294.00222 * 20 19 18 38 38 H 1.09006 * 109.47194 * 53.99866 * 20 19 18 39 39 H 1.08993 * 109.47161 * 300.00421 * 23 22 21 40 40 H 1.08996 * 109.46756 * 60.00081 * 23 22 21 41 41 H 1.09001 * 109.46991 * 179.97438 * 23 22 21 42 42 H 1.08001 * 119.93463 * 180.27754 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 3.7297 -0.7629 -1.4827 7 1 2.7860 -1.1964 -1.1862 8 6 4.6944 -1.5522 -2.0981 9 7 5.9676 -1.2560 -1.9657 10 14 4.1808 -3.0339 -3.1130 11 1 4.0924 -2.6470 -4.5440 12 1 5.1857 -4.1155 -2.9537 13 1 2.8557 -3.5170 -2.6481 14 6 4.6229 1.2999 -2.1781 15 8 5.0320 0.7741 -3.1958 16 6 4.8350 2.7412 -1.9571 17 6 3.9588 3.4619 -1.1381 18 6 4.1614 4.8115 -0.9347 19 8 3.3104 5.5141 -0.1393 20 6 2.2627 4.7802 0.4975 21 6 5.2382 5.4562 -1.5441 22 8 5.4348 6.7845 -1.3412 23 6 6.5566 7.3816 -1.9947 24 6 6.1086 4.7446 -2.3566 25 6 5.9129 3.3937 -2.5666 26 9 6.7622 2.7024 -3.3579 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6886 1.8463 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8515 0.5681 0.8409 33 1 3.9786 2.1764 0.0889 34 1 6.6367 -1.7643 -2.4503 35 1 3.1255 2.9628 -0.6659 36 1 1.7245 5.4354 1.1824 37 1 1.5745 4.3999 -0.2575 38 1 2.6896 3.9454 1.0533 39 1 7.4730 6.8955 -1.6603 40 1 6.4546 7.2620 -3.0733 41 1 6.5973 8.4429 -1.7494 42 1 6.9433 5.2471 -2.8226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457200476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:12 Heat of formation + Delta-G solvation = -139.859743 kcal Electronic energy + Delta-G solvation = -29732.159572 eV Core-core repulsion = 25401.658098 eV Total energy + Delta-G solvation = -4330.501475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.85269 -41.94257 -40.45275 -39.48893 -38.63203 -37.39039 -36.15065 -34.23908 -31.79363 -31.09347 -30.64234 -28.29922 -28.06137 -27.32880 -26.53361 -24.42083 -23.52938 -23.36070 -21.59363 -19.68475 -19.18455 -18.43308 -18.19868 -17.84084 -17.56558 -17.25663 -16.77244 -16.55459 -16.43269 -16.36922 -16.19366 -15.85819 -15.73022 -15.55579 -15.45981 -14.93053 -14.80191 -14.01856 -13.81128 -13.52987 -13.46116 -13.32592 -12.99744 -12.90656 -12.75649 -12.62227 -12.55193 -12.39980 -12.15315 -12.12171 -12.05663 -12.02356 -11.52249 -10.80675 -10.44533 -10.18964 -9.83781 -9.21087 -8.89712 -8.22617 -5.88167 -0.24231 -0.00978 1.36870 1.46358 1.51270 2.02401 2.12689 2.23546 2.33692 2.70538 2.96467 3.03259 3.19238 3.28950 3.50675 3.75067 3.92358 3.99570 4.17781 4.23344 4.32542 4.33080 4.38891 4.42645 4.43157 4.46226 4.49481 4.61974 4.64842 4.73467 4.77351 4.82373 4.90854 4.92988 4.99545 5.01743 5.38562 5.65634 5.95279 6.26968 6.42023 6.42307 6.98362 7.19437 7.63765 8.25970 8.84178 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012721 B = 0.005373 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.594635 B = 5209.553191 C = 7155.488744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.399 6.399 3 C 0.050 3.950 4 C 0.060 3.940 5 N -0.439 5.439 6 C -0.346 4.346 7 H 0.106 0.894 8 C 0.024 3.976 9 N -0.861 5.861 10 Si 0.957 3.043 11 H -0.296 1.296 12 H -0.284 1.284 13 H -0.250 1.250 14 C 0.483 3.517 15 O -0.583 6.583 16 C -0.161 4.161 17 C -0.147 4.147 18 C 0.089 3.911 19 O -0.308 6.308 20 C 0.003 3.997 21 C 0.142 3.858 22 O -0.306 6.306 23 C 0.010 3.990 24 C -0.205 4.205 25 C 0.120 3.880 26 F -0.141 7.141 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.120 0.880 34 H 0.257 0.743 35 H 0.184 0.816 36 H 0.135 0.865 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.130 0.870 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.372 17.651 7.310 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.318 6.318 3 C -0.027 4.027 4 C -0.062 4.062 5 N -0.158 5.158 6 C -0.473 4.473 7 H 0.124 0.876 8 C -0.183 4.183 9 N -0.497 5.497 10 Si 0.782 3.218 11 H -0.224 1.224 12 H -0.210 1.210 13 H -0.173 1.173 14 C 0.273 3.727 15 O -0.466 6.466 16 C -0.166 4.166 17 C -0.166 4.166 18 C 0.043 3.957 19 O -0.222 6.222 20 C -0.091 4.091 21 C 0.095 3.905 22 O -0.219 6.219 23 C -0.084 4.084 24 C -0.224 4.224 25 C 0.099 3.901 26 F -0.119 7.119 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.137 0.863 34 H 0.066 0.934 35 H 0.200 0.800 36 H 0.153 0.847 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.148 0.852 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.980 17.418 6.995 20.026 hybrid contribution 0.473 -1.376 -1.148 1.853 sum -6.507 16.042 5.847 18.272 Atomic orbital electron populations 1.22913 0.80367 1.03321 1.00732 1.88109 1.20725 1.27642 1.95333 1.23050 0.92805 0.85769 1.01113 1.22786 0.94506 1.00498 0.88442 1.43344 1.50989 1.08334 1.13155 1.19656 1.00465 0.84236 1.42966 0.87626 1.25991 0.93983 1.00133 0.98156 1.70083 1.01246 1.41939 1.36408 0.85499 0.79021 0.78442 0.78821 1.22360 1.20954 1.17320 1.18211 0.84384 0.85470 0.84674 1.90608 1.52736 1.73086 1.30178 1.20152 0.98324 0.95216 1.02897 1.21955 1.02262 0.92262 1.00127 1.18088 0.91997 0.89231 0.96418 1.86167 1.40577 1.36307 1.59123 1.23610 0.88411 0.99137 0.97938 1.18035 0.92716 0.84464 0.95326 1.86145 1.49431 1.17450 1.68886 1.23521 0.86764 1.00164 0.97986 1.21003 1.04308 0.91722 1.05403 1.17646 0.89240 0.90124 0.93063 1.91503 1.68802 1.80077 1.71535 0.91791 0.94119 0.89623 0.88601 0.93465 0.91836 0.86263 0.93391 0.79973 0.84729 0.91785 0.91703 0.91455 0.91466 0.85212 0.80490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 11.01 113.37 1.25 1.80 16 2 O -0.40 -13.93 8.32 -148.98 -1.24 -15.17 16 3 C 0.05 1.49 5.19 71.98 0.37 1.86 16 4 C 0.06 2.32 5.37 86.38 0.46 2.78 16 5 N -0.44 -22.87 2.61 -639.33 -1.67 -24.54 16 6 C -0.35 -19.89 8.77 84.08 0.74 -19.16 16 7 H 0.11 5.87 6.05 -2.91 -0.02 5.86 16 8 C 0.02 1.45 4.02 84.94 0.34 1.79 16 9 N -0.86 -55.46 12.02 21.67 0.26 -55.20 16 10 Si 0.96 48.34 29.64 68.60 2.03 50.37 16 11 H -0.30 -15.69 7.11 99.48 0.71 -14.99 16 12 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 13 H -0.25 -11.53 7.11 99.48 0.71 -10.82 16 14 C 0.48 26.75 6.86 86.64 0.59 27.34 16 15 O -0.58 -38.08 13.32 -4.15 -0.06 -38.13 16 16 C -0.16 -7.10 5.57 -20.05 -0.11 -7.21 16 17 C -0.15 -4.92 6.43 22.62 0.15 -4.77 16 18 C 0.09 2.60 6.69 22.52 0.15 2.75 16 19 O -0.31 -7.53 10.28 -79.97 -0.82 -8.35 16 20 C 0.00 0.05 9.83 113.37 1.11 1.16 16 21 C 0.14 4.05 6.71 22.69 0.15 4.20 16 22 O -0.31 -7.27 10.26 -77.29 -0.79 -8.06 16 23 C 0.01 0.14 9.81 113.37 1.11 1.25 16 24 C -0.21 -6.28 8.99 22.35 0.20 -6.08 16 25 C 0.12 5.02 7.24 22.66 0.16 5.19 16 26 F -0.14 -6.88 15.87 44.97 0.71 -6.16 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.10 1.87 7.88 -2.39 -0.02 1.85 16 31 H 0.05 1.40 7.33 -2.39 -0.02 1.38 16 32 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.12 4.05 3.76 -4.84 -0.02 4.03 16 34 H 0.26 16.09 8.31 -92.71 -0.77 15.31 16 35 H 0.18 5.36 1.25 -2.91 0.00 5.36 16 36 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 0.93 7.88 -2.38 -0.02 0.91 16 38 H 0.06 0.94 7.13 -2.38 -0.02 0.92 16 39 H 0.07 0.87 7.65 -2.39 -0.02 0.85 16 40 H 0.07 0.87 7.65 -2.39 -0.02 0.85 16 41 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.18 4.15 6.27 -2.91 -0.02 4.13 16 Total: -1.00 -87.15 346.14 6.18 -80.97 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.07 Total: 11.36 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 6.69 Total: 12.91 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -1.41 Total: -79.74 kcal Atomic # 8 Polarization: -66.80 SS G_CDS: -2.91 Total: -69.71 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.71 Total: -6.16 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.37 kcal Total: -87.15 6.18 -80.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457200476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.885 kcal (2) G-P(sol) polarization free energy of solvation -87.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds