Wall clock time and date at job start Tue Mar 31 2020 15:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34652 * 117.00014 * 2 1 4 4 O 1.21516 * 119.99971 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99981 * 179.97438 * 3 2 1 6 6 C 1.40163 * 120.00251 * 175.48320 * 5 3 2 7 7 C 1.38829 * 120.00948 * 35.57958 * 6 5 3 8 8 C 1.38098 * 119.98356 * 180.02562 * 7 6 5 9 9 C 1.38716 * 120.01378 * 359.97438 * 8 7 6 10 10 O 1.35978 * 119.98473 * 179.97438 * 9 8 7 11 11 C 1.42900 * 117.00026 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47148 * 179.97438 * 11 10 9 13 13 C 1.38629 * 119.75300 * 269.72707 * 12 11 10 14 14 C 1.37615 * 120.24846 * 179.72120 * 13 12 11 15 15 C 1.40718 * 119.74561 * 0.57336 * 14 13 12 16 16 C 1.41388 * 120.24612 * 179.68074 * 15 14 13 17 17 H 1.07995 * 120.00240 * 204.61140 * 16 15 14 18 18 C 1.39949 * 120.00189 * 24.61143 * 16 15 14 19 19 N 1.30830 * 119.99630 * 15.32809 * 18 16 15 20 20 Si 1.86794 * 120.00269 * 195.32810 * 18 16 15 21 21 H 1.48496 * 109.47314 * 59.99575 * 20 18 16 22 22 H 1.48503 * 109.47394 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46892 * 299.99669 * 20 18 16 24 24 C 1.40718 * 119.50879 * 359.70110 * 15 14 13 25 25 C 1.37620 * 119.74538 * 0.02562 * 24 15 14 26 26 C 1.38714 * 120.02640 * 0.25769 * 9 8 7 27 27 C 1.38087 * 120.01447 * 359.48627 * 26 9 8 28 28 H 1.08996 * 109.47372 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47574 * 300.00324 * 1 2 3 30 30 H 1.09001 * 109.47326 * 60.00180 * 1 2 3 31 31 H 0.96998 * 120.00329 * 355.49057 * 5 3 2 32 32 H 1.08000 * 120.01135 * 359.97438 * 7 6 5 33 33 H 1.08005 * 119.99079 * 179.97438 * 8 7 6 34 34 H 1.08996 * 109.46929 * 299.99979 * 11 10 9 35 35 H 1.09010 * 109.46944 * 59.99868 * 11 10 9 36 36 H 1.08002 * 119.87274 * 359.97438 * 13 12 11 37 37 H 1.08000 * 120.12846 * 180.28093 * 14 13 12 38 38 H 0.96999 * 119.99361 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.12575 * 179.97438 * 24 15 14 40 40 H 1.08004 * 119.87350 * 179.97438 * 25 24 15 41 41 H 1.08000 * 119.98922 * 179.72699 * 26 9 8 42 42 H 1.08001 * 120.00940 * 180.25220 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4015 2.2189 -0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.0458 2.5153 -0.0951 7 6 3.4869 3.6297 0.5159 8 6 4.1144 4.8562 0.4210 9 6 5.3030 4.9748 -0.2843 10 8 5.9200 6.1829 -0.3779 11 6 7.1409 6.2322 -1.1188 12 6 7.6748 7.6414 -1.1142 13 6 7.3039 8.5210 -2.1195 14 6 7.7809 9.8118 -2.1221 15 6 8.6577 10.2342 -1.1057 16 6 9.1594 11.5560 -1.1018 17 1 10.0925 11.7780 -0.6055 18 6 8.4469 12.5769 -1.7412 19 7 7.1964 12.3901 -2.0776 20 14 9.2811 14.2060 -2.1143 21 1 10.4482 13.9726 -3.0023 22 1 8.3178 15.1122 -2.7898 23 1 9.7403 14.8287 -0.8467 24 6 9.0318 9.3311 -0.0936 25 6 8.5381 8.0466 -0.1079 26 6 5.8593 3.8627 -0.8990 27 6 5.2357 2.6346 -0.8003 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.9373 0.4594 0.0669 32 1 2.5613 3.5376 1.0647 33 1 3.6795 5.7233 0.8959 34 1 7.8711 5.5651 -0.6607 35 1 6.9555 5.9176 -2.1459 36 1 6.6349 8.1930 -2.9014 37 1 7.4871 10.4967 -2.9037 38 1 6.7025 13.0978 -2.5204 39 1 9.7046 9.6445 0.6911 40 1 8.8242 7.3515 0.6677 41 1 6.7824 3.9566 -1.4516 42 1 5.6710 1.7680 -1.2756 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495013403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:01 Heat of formation + Delta-G solvation = -69.176722 kcal Electronic energy + Delta-G solvation = -25438.388826 eV Core-core repulsion = 21541.721622 eV Total energy + Delta-G solvation = -3896.667204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.10254 -39.82497 -38.20525 -37.35587 -36.37755 -34.71036 -33.81675 -31.20411 -30.68643 -29.36560 -29.10787 -27.64274 -26.91486 -24.22691 -22.83848 -22.73208 -21.15858 -21.04629 -19.99904 -19.14605 -18.02894 -17.64698 -17.37146 -16.89963 -16.34267 -15.79522 -15.49805 -15.13521 -14.61375 -14.42059 -14.29851 -13.93092 -13.77307 -13.41200 -13.28824 -13.02807 -12.69728 -12.53173 -12.46809 -12.27296 -12.00183 -11.68154 -11.28720 -11.22323 -11.14989 -11.02059 -10.91986 -10.69830 -10.55632 -10.36582 -9.92333 -9.70037 -9.44915 -9.22760 -8.99335 -7.70237 -7.54502 -7.42451 -6.82026 -4.45518 1.29206 1.35784 1.82553 2.50722 2.56750 3.01853 3.03062 3.04377 3.08428 3.77953 3.83271 3.87751 3.91300 4.61419 4.76506 4.78289 4.85286 4.92054 5.09653 5.24154 5.36180 5.46469 5.59705 5.60459 5.66516 5.84024 5.88172 5.99325 6.07757 6.22256 6.26551 6.32747 6.39854 6.45300 6.84369 6.88765 6.99439 7.04081 7.20575 7.29545 7.53548 7.71422 7.83576 7.96379 7.97685 8.03165 8.21549 8.56335 8.80836 8.88927 10.10603 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.034431 B = 0.001818 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.024406 B =15394.041280 C =15845.996977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.645 3.355 4 O -0.554 6.554 5 N -0.645 5.645 6 C 0.095 3.905 7 C -0.075 4.075 8 C -0.142 4.142 9 C 0.137 3.863 10 O -0.305 6.305 11 C 0.126 3.874 12 C -0.234 4.234 13 C -0.077 4.077 14 C -0.169 4.169 15 C 0.117 3.883 16 C -0.456 4.456 17 H 0.079 0.921 18 C 0.073 3.927 19 N -0.788 5.788 20 Si 0.912 3.088 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.230 4.230 25 C -0.065 4.065 26 C -0.198 4.198 27 C -0.094 4.094 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.415 0.585 32 H 0.142 0.858 33 H 0.135 0.865 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.283 0.717 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.135 0.865 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.751 -21.103 1.942 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.286 6.286 3 C 0.398 3.602 4 O -0.442 6.442 5 N -0.297 5.297 6 C 0.004 3.996 7 C -0.095 4.095 8 C -0.161 4.161 9 C 0.090 3.910 10 O -0.219 6.219 11 C 0.053 3.947 12 C -0.235 4.235 13 C -0.096 4.096 14 C -0.189 4.189 15 C 0.114 3.886 16 C -0.485 4.485 17 H 0.097 0.903 18 C -0.145 4.145 19 N -0.413 5.413 20 Si 0.736 3.264 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.249 4.249 25 C -0.084 4.084 26 C -0.217 4.217 27 C -0.115 4.115 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.251 0.749 32 H 0.160 0.840 33 H 0.153 0.847 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.140 0.860 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.152 0.848 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.449 -20.345 1.896 22.111 hybrid contribution 0.432 0.230 -0.270 0.558 sum -8.017 -20.116 1.626 21.715 Atomic orbital electron populations 1.23244 0.73920 1.03629 1.03037 1.86232 1.24563 1.30771 1.86993 1.18129 0.83236 0.82388 0.76447 1.91027 1.64393 1.34508 1.54254 1.41821 1.03160 1.09134 1.75564 1.17268 0.95241 0.84260 1.02878 1.21034 0.99930 0.90838 0.97691 1.20419 0.94674 0.98200 1.02852 1.19274 0.92268 0.85520 0.93963 1.86412 1.38469 1.26887 1.70108 1.21494 0.82548 0.96879 0.93793 1.18654 1.08303 0.94299 1.02266 1.20548 0.98085 0.94011 0.96919 1.21365 1.02919 0.94136 1.00455 1.17692 0.89456 0.92433 0.89032 1.19645 1.06787 0.92314 1.29771 0.90277 1.25976 0.94225 1.01119 0.93202 1.69812 1.07850 1.34498 1.29113 0.86300 0.79987 0.80386 0.79688 1.18746 1.20244 1.18917 1.20967 1.08397 0.94646 1.00931 1.20380 0.96733 0.95494 0.95754 1.21098 1.02868 0.92208 1.05547 1.20577 0.95159 0.97779 0.97961 0.87806 0.91628 0.91612 0.74941 0.84023 0.84693 0.92881 0.92843 0.89336 0.85955 0.90613 0.88769 0.89320 0.84764 0.85537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 10.56 101.05 1.07 1.41 16 2 O -0.37 -3.34 10.62 -40.36 -0.43 -3.77 16 3 C 0.64 7.29 8.59 54.05 0.46 7.75 16 4 O -0.55 -7.97 13.60 -19.28 -0.26 -8.23 16 5 N -0.64 -6.25 5.35 -14.23 -0.08 -6.32 16 6 C 0.10 1.14 6.29 -83.61 -0.53 0.62 16 7 C -0.08 -1.02 8.69 -39.41 -0.34 -1.37 16 8 C -0.14 -2.11 9.98 -39.46 -0.39 -2.50 16 9 C 0.14 2.16 6.69 -39.23 -0.26 1.90 16 10 O -0.31 -5.73 10.12 -19.67 -0.20 -5.93 16 11 C 0.13 2.25 4.85 36.01 0.17 2.42 16 12 C -0.23 -5.12 5.53 -104.33 -0.58 -5.70 16 13 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 14 C -0.17 -4.38 8.70 -38.87 -0.34 -4.71 16 15 C 0.12 3.08 5.58 -106.83 -0.60 2.48 16 16 C -0.46 -11.91 9.07 -37.74 -0.34 -12.25 16 17 H 0.08 1.97 7.89 -52.49 -0.41 1.55 16 18 C 0.07 1.81 5.20 -17.34 -0.09 1.72 16 19 N -0.79 -20.17 10.82 55.55 0.60 -19.56 16 20 Si 0.91 18.31 29.59 -169.99 -5.03 13.28 16 21 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 22 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 24 C -0.23 -5.60 9.80 -38.87 -0.38 -5.98 16 25 C -0.07 -1.46 9.67 -39.66 -0.38 -1.84 16 26 C -0.20 -2.60 9.03 -39.46 -0.36 -2.95 16 27 C -0.09 -1.05 9.96 -39.42 -0.39 -1.44 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.41 2.64 8.93 -40.82 -0.36 2.27 16 32 H 0.14 1.95 6.26 -52.49 -0.33 1.62 16 33 H 0.14 1.93 8.06 -52.48 -0.42 1.51 16 34 H 0.05 0.83 7.61 -51.93 -0.40 0.44 16 35 H 0.05 0.87 7.58 -51.92 -0.39 0.47 16 36 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 37 H 0.12 3.25 6.07 -52.49 -0.32 2.93 16 38 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 39 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 40 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 41 H 0.13 1.58 6.29 -52.49 -0.33 1.25 16 42 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 362.90 15.07 5.47 5.47 Total: -1.00 -30.46 362.90 -8.65 -39.11 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.06 Total: 8.58 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -3.66 Total: -22.62 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.52 Total: -25.89 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.89 Total: -17.93 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.46 -8.65 -39.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495013403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.071 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds