Wall clock time and date at job start Tue Mar 31 2020 15:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34652 * 117.00014 * 2 1 4 4 O 1.21516 * 119.99971 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99981 * 179.97438 * 3 2 1 6 6 C 1.40163 * 120.00251 * 175.48320 * 5 3 2 7 7 C 1.38829 * 120.00948 * 35.57958 * 6 5 3 8 8 C 1.38098 * 119.98356 * 180.02562 * 7 6 5 9 9 C 1.38716 * 120.01378 * 359.97438 * 8 7 6 10 10 O 1.35978 * 119.98473 * 179.97438 * 9 8 7 11 11 C 1.42900 * 117.00026 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47148 * 179.97438 * 11 10 9 13 13 C 1.38629 * 119.75300 * 269.72707 * 12 11 10 14 14 C 1.37615 * 120.24846 * 179.72120 * 13 12 11 15 15 C 1.40718 * 119.74561 * 0.57336 * 14 13 12 16 16 C 1.41388 * 120.24612 * 179.68074 * 15 14 13 17 17 H 1.07995 * 120.00240 * 204.61140 * 16 15 14 18 18 C 1.39949 * 120.00189 * 24.61143 * 16 15 14 19 19 N 1.30830 * 119.99630 * 15.32809 * 18 16 15 20 20 Si 1.86794 * 120.00269 * 195.32810 * 18 16 15 21 21 H 1.48496 * 109.47314 * 59.99575 * 20 18 16 22 22 H 1.48503 * 109.47394 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46892 * 299.99669 * 20 18 16 24 24 C 1.40718 * 119.50879 * 359.70110 * 15 14 13 25 25 C 1.37620 * 119.74538 * 0.02562 * 24 15 14 26 26 C 1.38714 * 120.02640 * 0.25769 * 9 8 7 27 27 C 1.38087 * 120.01447 * 359.48627 * 26 9 8 28 28 H 1.08996 * 109.47372 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47574 * 300.00324 * 1 2 3 30 30 H 1.09001 * 109.47326 * 60.00180 * 1 2 3 31 31 H 0.96998 * 120.00329 * 355.49057 * 5 3 2 32 32 H 1.08000 * 120.01135 * 359.97438 * 7 6 5 33 33 H 1.08005 * 119.99079 * 179.97438 * 8 7 6 34 34 H 1.08996 * 109.46929 * 299.99979 * 11 10 9 35 35 H 1.09010 * 109.46944 * 59.99868 * 11 10 9 36 36 H 1.08002 * 119.87274 * 359.97438 * 13 12 11 37 37 H 1.08000 * 120.12846 * 180.28093 * 14 13 12 38 38 H 0.96999 * 119.99361 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.12575 * 179.97438 * 24 15 14 40 40 H 1.08004 * 119.87350 * 179.97438 * 25 24 15 41 41 H 1.08000 * 119.98922 * 179.72699 * 26 9 8 42 42 H 1.08001 * 120.00940 * 180.25220 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4015 2.2189 -0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.0458 2.5153 -0.0951 7 6 3.4869 3.6297 0.5159 8 6 4.1144 4.8562 0.4210 9 6 5.3030 4.9748 -0.2843 10 8 5.9200 6.1829 -0.3779 11 6 7.1409 6.2322 -1.1188 12 6 7.6748 7.6414 -1.1142 13 6 7.3039 8.5210 -2.1195 14 6 7.7809 9.8118 -2.1221 15 6 8.6577 10.2342 -1.1057 16 6 9.1594 11.5560 -1.1018 17 1 10.0925 11.7780 -0.6055 18 6 8.4469 12.5769 -1.7412 19 7 7.1964 12.3901 -2.0776 20 14 9.2811 14.2060 -2.1143 21 1 10.4482 13.9726 -3.0023 22 1 8.3178 15.1122 -2.7898 23 1 9.7403 14.8287 -0.8467 24 6 9.0318 9.3311 -0.0936 25 6 8.5381 8.0466 -0.1079 26 6 5.8593 3.8627 -0.8990 27 6 5.2357 2.6346 -0.8003 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.9373 0.4594 0.0669 32 1 2.5613 3.5376 1.0647 33 1 3.6795 5.7233 0.8959 34 1 7.8711 5.5651 -0.6607 35 1 6.9555 5.9176 -2.1459 36 1 6.6349 8.1930 -2.9014 37 1 7.4871 10.4967 -2.9037 38 1 6.7025 13.0978 -2.5204 39 1 9.7046 9.6445 0.6911 40 1 8.8242 7.3515 0.6677 41 1 6.7824 3.9566 -1.4516 42 1 5.6710 1.7680 -1.2756 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495013403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:59 Heat of formation + Delta-G solvation = -86.637940 kcal Electronic energy + Delta-G solvation = -25439.146002 eV Core-core repulsion = 21541.721622 eV Total energy + Delta-G solvation = -3897.424380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.98350 -40.94324 -39.58555 -38.75986 -37.34332 -35.86280 -35.46073 -32.63039 -31.99806 -31.20812 -30.14198 -28.82045 -28.03303 -25.80069 -23.95578 -23.72727 -22.93366 -22.21820 -21.60252 -20.00116 -19.27000 -19.12518 -18.61384 -17.70448 -17.33598 -17.17883 -16.90953 -16.59607 -15.91229 -15.66758 -15.36334 -15.17968 -15.02898 -14.70501 -14.50258 -14.19781 -14.02634 -13.84558 -13.72635 -13.51601 -13.45198 -13.00559 -12.84121 -12.75416 -12.56519 -12.33118 -12.05632 -11.89287 -11.85723 -11.62671 -11.49455 -11.28307 -11.05780 -10.92810 -10.00963 -9.42380 -9.30498 -8.76473 -8.65597 -6.40098 0.27669 0.33751 0.80671 1.05838 1.12480 1.37815 1.47932 1.51289 1.62264 2.19104 2.41201 2.77050 2.87312 3.17201 3.74028 3.83173 3.94028 4.13451 4.20282 4.26939 4.32395 4.36099 4.40791 4.48546 4.51366 4.55375 4.59383 4.70910 4.88563 5.00709 5.02272 5.12222 5.15964 5.26699 5.33327 5.37453 5.42198 5.43482 5.66545 5.82780 5.89960 6.06830 6.17112 6.24934 6.33759 6.58651 6.66123 6.89593 6.98871 7.16047 8.29697 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.034431 B = 0.001818 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.024406 B =15394.041280 C =15845.996977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.366 6.366 3 C 0.642 3.358 4 O -0.590 6.590 5 N -0.631 5.631 6 C 0.101 3.899 7 C -0.085 4.085 8 C -0.156 4.156 9 C 0.109 3.891 10 O -0.335 6.335 11 C 0.131 3.869 12 C -0.227 4.227 13 C -0.085 4.085 14 C -0.195 4.195 15 C 0.083 3.917 16 C -0.495 4.495 17 H 0.079 0.921 18 C 0.032 3.968 19 N -0.824 5.824 20 Si 0.987 3.013 21 H -0.258 1.258 22 H -0.268 1.268 23 H -0.259 1.259 24 C -0.246 4.246 25 C -0.068 4.068 26 C -0.193 4.193 27 C -0.081 4.081 28 H 0.140 0.860 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.433 0.567 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.289 0.711 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.153 0.847 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.399 -23.951 1.637 25.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.280 6.280 3 C 0.397 3.603 4 O -0.480 6.480 5 N -0.285 5.285 6 C 0.008 3.992 7 C -0.105 4.105 8 C -0.176 4.176 9 C 0.063 3.937 10 O -0.249 6.249 11 C 0.058 3.942 12 C -0.229 4.229 13 C -0.103 4.103 14 C -0.214 4.214 15 C 0.081 3.919 16 C -0.524 4.524 17 H 0.098 0.902 18 C -0.183 4.183 19 N -0.450 5.450 20 Si 0.807 3.193 21 H -0.182 1.182 22 H -0.192 1.192 23 H -0.183 1.183 24 C -0.265 4.265 25 C -0.086 4.086 26 C -0.212 4.212 27 C -0.101 4.101 28 H 0.158 0.842 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.273 0.727 32 H 0.153 0.847 33 H 0.144 0.856 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.138 0.862 41 H 0.170 0.830 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.097 -23.262 1.601 24.683 hybrid contribution 0.168 0.822 -0.120 0.848 sum -7.929 -22.440 1.481 23.845 Atomic orbital electron populations 1.23565 0.72371 1.05909 1.02712 1.86256 1.26013 1.29206 1.86484 1.18325 0.83558 0.82560 0.75896 1.91014 1.65287 1.35899 1.55843 1.41693 1.02878 1.09151 1.74789 1.17389 0.95374 0.84534 1.01867 1.21019 0.99875 0.91222 0.98378 1.20437 0.95053 0.98584 1.03486 1.19429 0.92902 0.85390 0.95971 1.86295 1.38860 1.28925 1.70870 1.21430 0.83142 0.94386 0.95285 1.19121 1.06881 0.96124 1.00726 1.20818 0.98009 0.93480 0.97995 1.21345 1.04298 0.95173 1.00590 1.18061 0.90454 0.93414 0.90009 1.19909 1.07493 0.93138 1.31827 0.90245 1.26857 0.94529 1.04633 0.92329 1.69878 1.09181 1.35991 1.29912 0.85179 0.78892 0.75595 0.79613 1.18227 1.19236 1.18295 1.21196 1.08933 0.95560 1.00834 1.20742 0.96159 0.95230 0.96505 1.21335 1.03291 0.91883 1.04699 1.20929 0.94129 0.98390 0.96649 0.84204 0.91895 0.92098 0.72733 0.84740 0.85597 0.90205 0.91039 0.87650 0.87673 0.90019 0.88065 0.86229 0.82956 0.81463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.50 10.56 113.37 1.20 1.70 16 2 O -0.37 -5.77 10.62 -55.62 -0.59 -6.36 16 3 C 0.64 13.42 8.59 129.79 1.12 14.53 16 4 O -0.59 -16.63 13.60 19.79 0.27 -16.36 16 5 N -0.63 -10.49 5.35 -429.34 -2.30 -12.78 16 6 C 0.10 2.17 6.29 38.09 0.24 2.41 16 7 C -0.08 -2.26 8.69 22.38 0.19 -2.07 16 8 C -0.16 -4.65 9.98 22.35 0.22 -4.43 16 9 C 0.11 3.31 6.69 22.50 0.15 3.46 16 10 O -0.33 -12.22 10.12 -93.30 -0.94 -13.16 16 11 C 0.13 4.36 4.85 71.24 0.35 4.71 16 12 C -0.23 -9.74 5.53 -19.68 -0.11 -9.85 16 13 C -0.08 -4.00 9.67 22.22 0.21 -3.78 16 14 C -0.19 -10.45 8.70 22.73 0.20 -10.25 16 15 C 0.08 4.56 5.58 -21.29 -0.12 4.44 16 16 C -0.49 -26.87 9.07 23.46 0.21 -26.65 16 17 H 0.08 4.11 7.89 -2.91 -0.02 4.09 16 18 C 0.03 1.60 5.20 85.26 0.44 2.04 16 19 N -0.82 -43.78 10.82 21.83 0.24 -43.55 16 20 Si 0.99 38.19 29.59 68.60 2.03 40.22 16 21 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 22 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 23 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 24 C -0.25 -12.18 9.80 22.73 0.22 -11.96 16 25 C -0.07 -2.99 9.67 22.22 0.21 -2.78 16 26 C -0.19 -4.45 9.03 22.35 0.20 -4.24 16 27 C -0.08 -1.48 9.96 22.38 0.22 -1.26 16 28 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.43 3.92 8.93 -92.71 -0.83 3.09 16 32 H 0.13 3.75 6.26 -2.91 -0.02 3.74 16 33 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 34 H 0.08 2.22 7.61 -2.39 -0.02 2.20 16 35 H 0.07 2.11 7.58 -2.38 -0.02 2.09 16 36 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 37 H 0.11 5.90 6.07 -2.91 -0.02 5.88 16 38 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 39 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 40 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 41 H 0.15 2.93 6.29 -2.91 -0.02 2.91 16 42 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -69.23 362.90 4.11 -65.13 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.23 Total: 30.86 kcal Atomic # 6 Polarization: -49.16 SS G_CDS: 5.17 Total: -43.99 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -2.06 Total: -56.33 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -1.27 Total: -35.88 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Total: -69.23 4.11 -65.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495013403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.510 kcal (2) G-P(sol) polarization free energy of solvation -69.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds