Wall clock time and date at job start Tue Mar 31 2020 14:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35998 * 116.99995 * 2 1 4 4 C 1.38562 * 120.07051 * 359.96818 * 3 2 1 5 5 C 1.38242 * 119.99418 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.92496 * 180.02562 * 5 4 3 7 7 N 1.46493 * 109.47068 * 90.00033 * 6 5 4 8 8 C 1.34779 * 120.00069 * 179.97438 * 7 6 5 9 9 O 1.21594 * 119.99915 * 0.02562 * 8 7 6 10 10 C 1.47641 * 120.00195 * 179.97438 * 8 7 6 11 11 C 1.40011 * 119.89439 * 359.73421 * 10 8 7 12 12 C 1.36321 * 120.10626 * 179.75829 * 11 10 8 13 13 C 1.40884 * 119.88968 * 0.50752 * 12 11 10 14 14 C 1.41112 * 120.10367 * 179.71935 * 13 12 11 15 15 H 1.08003 * 119.99963 * 204.65260 * 14 13 12 16 16 C 1.40227 * 119.99816 * 24.65241 * 14 13 12 17 17 N 1.30641 * 119.99878 * 17.86763 * 16 14 13 18 18 Si 1.86796 * 119.99887 * 197.86119 * 16 14 13 19 19 H 1.48506 * 109.47052 * 90.00436 * 18 16 14 20 20 H 1.48505 * 109.47283 * 209.99960 * 18 16 14 21 21 H 1.48492 * 109.47577 * 330.00755 * 18 16 14 22 22 C 1.40892 * 119.79396 * 359.74508 * 13 12 11 23 23 C 1.36307 * 119.89367 * 359.97438 * 22 13 12 24 24 C 1.38253 * 120.15078 * 359.97438 * 5 4 3 25 25 C 1.38243 * 120.14258 * 359.75954 * 24 5 4 26 26 C 1.38565 * 120.00204 * 0.51706 * 25 24 5 27 27 O 1.35995 * 120.07372 * 179.73983 * 26 25 24 28 28 H 1.09002 * 109.47763 * 300.00692 * 1 2 3 29 29 H 1.09007 * 109.46564 * 60.00879 * 1 2 3 30 30 H 1.09005 * 109.47331 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.00090 * 0.02562 * 4 3 2 32 32 H 1.08997 * 109.46898 * 210.00210 * 6 5 4 33 33 H 1.09003 * 109.46884 * 329.99645 * 6 5 4 34 34 H 0.97001 * 120.00182 * 0.02562 * 7 6 5 35 35 H 1.07999 * 119.94957 * 0.02562 * 11 10 8 36 36 H 1.08002 * 120.05390 * 180.22658 * 12 11 10 37 37 H 0.97002 * 119.99982 * 179.97438 * 17 16 14 38 38 H 1.08005 * 120.05138 * 179.97438 * 22 13 12 39 39 H 1.08000 * 119.95174 * 179.97438 * 23 22 13 40 40 H 1.08000 * 119.92771 * 180.02562 * 24 5 4 41 41 H 1.08001 * 119.99881 * 180.25951 * 25 24 5 42 42 H 0.96700 * 113.99651 * 269.72169 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3748 -0.0007 5 6 1.9224 3.6057 -0.0012 6 6 1.1016 4.8696 -0.0013 7 7 0.8361 5.2795 1.3798 8 6 0.1149 6.3912 1.6260 9 8 -0.3157 7.0536 0.7017 10 6 -0.1532 6.8041 3.0179 11 6 0.3380 6.0361 4.0805 12 6 0.0972 6.4159 5.3673 13 6 -0.6564 7.5776 5.6271 14 6 -0.9134 7.9717 6.9575 15 1 -1.7749 8.5828 7.1828 16 6 -0.0502 7.5699 7.9869 17 7 1.1515 7.1436 7.7026 18 14 -0.6185 7.6445 9.7648 19 1 -1.2573 6.3559 10.1347 20 1 0.5499 7.8893 10.6481 21 1 -1.5999 8.7473 9.9250 22 6 -1.1531 8.3443 4.5545 23 6 -0.9023 7.9596 3.2711 24 6 3.3029 3.6798 -0.0005 25 6 4.0602 2.5233 0.0057 26 6 3.4359 1.2863 0.0004 27 8 4.1795 0.1476 0.0012 28 1 -0.3635 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 0.2146 2.3196 -0.0008 32 1 1.6500 5.6588 -0.5156 33 1 0.1572 4.6894 -0.5149 34 1 1.1799 4.7513 2.1171 35 1 0.9123 5.1436 3.8803 36 1 0.4796 5.8249 6.1864 37 1 1.7488 6.8660 8.4147 38 1 -1.7317 9.2353 4.7489 39 1 -1.2830 8.5464 2.4482 40 1 3.7908 4.6433 -0.0005 41 1 5.1385 2.5839 0.0104 42 1 4.3947 -0.1821 -0.8820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000536173871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:02 Heat of formation + Delta-G solvation = -78.529725 kcal Electronic energy + Delta-G solvation = -26044.273306 eV Core-core repulsion = 22147.200525 eV Total energy + Delta-G solvation = -3897.072781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.69330 -39.13184 -38.06667 -37.36453 -36.83492 -34.11477 -33.88406 -31.05187 -30.43785 -29.82351 -29.44718 -27.78508 -26.36836 -25.02971 -22.60639 -22.13579 -21.53298 -20.88746 -19.65557 -18.86776 -17.76047 -17.52871 -16.90113 -16.53623 -16.20502 -15.66003 -15.45275 -15.23463 -14.71698 -14.46655 -14.13040 -14.11449 -13.95536 -13.65775 -13.21680 -12.78067 -12.74056 -12.46454 -12.30675 -12.09161 -11.98924 -11.88103 -11.47882 -11.35635 -11.31984 -11.28249 -10.96671 -10.80741 -10.66357 -10.05904 -9.57521 -9.37330 -9.21855 -8.90655 -8.65670 -8.33224 -7.73730 -7.56071 -7.04935 -4.61886 0.87086 1.13111 2.21145 2.90859 2.95041 2.96443 2.97415 3.02407 3.25864 3.72885 3.84545 3.90269 4.03852 4.46161 4.54444 4.61762 4.80948 4.91428 4.96031 5.07148 5.24263 5.33545 5.48382 5.52066 5.57642 5.71550 5.89812 6.03096 6.03374 6.10073 6.30304 6.35371 6.43031 6.75535 6.81371 6.86957 6.94255 7.03285 7.11922 7.42046 7.49082 7.63516 7.77534 7.84676 8.05575 8.20288 8.38555 8.61625 8.73792 9.03447 9.87027 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013729 B = 0.002565 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.057505 B =10915.467784 C =11844.450564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.101 3.899 4 C -0.176 4.176 5 C -0.068 4.068 6 C 0.164 3.836 7 N -0.738 5.738 8 C 0.572 3.428 9 O -0.576 6.576 10 C -0.285 4.285 11 C -0.062 4.062 12 C -0.178 4.178 13 C 0.129 3.871 14 C -0.442 4.442 15 H 0.085 0.915 16 C 0.074 3.926 17 N -0.770 5.770 18 Si 0.914 3.086 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.239 4.239 23 C -0.021 4.021 24 C -0.121 4.121 25 C -0.107 4.107 26 C 0.075 3.925 27 O -0.487 6.487 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.135 0.865 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.399 0.601 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.287 0.713 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.050 -12.601 -11.514 17.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.055 3.945 4 C -0.196 4.196 5 C -0.069 4.069 6 C 0.040 3.960 7 N -0.392 5.392 8 C 0.367 3.633 9 O -0.458 6.458 10 C -0.290 4.290 11 C -0.081 4.081 12 C -0.197 4.197 13 C 0.125 3.875 14 C -0.470 4.470 15 H 0.103 0.897 16 C -0.147 4.147 17 N -0.394 5.394 18 Si 0.738 3.262 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.259 4.259 23 C -0.040 4.040 24 C -0.140 4.140 25 C -0.126 4.126 26 C 0.030 3.970 27 O -0.296 6.296 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.153 0.847 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.234 0.766 35 H 0.106 0.894 36 H 0.138 0.862 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 4.015 -12.347 -11.457 17.316 hybrid contribution -0.079 -0.254 0.681 0.731 sum 3.936 -12.601 -10.775 17.041 Atomic orbital electron populations 1.23124 0.78238 1.04092 1.01697 1.86135 1.21401 1.26087 1.88615 1.19428 0.91726 0.84902 0.98473 1.21129 1.00395 0.91189 1.06851 1.19820 0.93980 0.94199 0.98897 1.20038 0.98321 0.92305 0.85333 1.45955 1.57486 1.28767 1.06975 1.18614 0.76085 0.78736 0.89821 1.90637 1.53731 1.54684 1.46729 1.18871 1.16267 1.03795 0.90029 1.20478 0.97457 0.96885 0.93316 1.20977 1.05273 0.98467 0.95017 1.17793 0.87761 0.89228 0.92682 1.19867 1.08768 1.26960 0.91377 0.89675 1.26105 0.93830 0.92345 1.02459 1.69741 1.04963 1.28421 1.36226 0.86201 0.79544 0.80136 0.80355 1.18925 1.19999 1.18274 1.20718 1.10853 1.02054 0.92265 1.20356 0.93977 0.93698 0.96016 1.20961 0.92891 0.98564 1.01602 1.21253 1.00684 0.90694 0.99934 1.17777 0.86132 0.86647 1.06456 1.84904 1.71743 1.39770 1.33150 0.92270 0.92557 0.88102 0.84708 0.90826 0.91169 0.76559 0.89381 0.86204 0.90193 0.88363 0.88094 0.84929 0.84469 0.76015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.48 10.28 -34.23 -0.35 -3.83 16 3 C 0.10 1.18 6.70 -39.12 -0.26 0.91 16 4 C -0.18 -1.99 8.69 -39.46 -0.34 -2.34 16 5 C -0.07 -0.80 5.25 -104.61 -0.55 -1.35 16 6 C 0.16 2.25 5.79 -5.19 -0.03 2.21 16 7 N -0.74 -12.23 5.50 -62.49 -0.34 -12.58 16 8 C 0.57 12.02 7.76 -12.42 -0.10 11.92 16 9 O -0.58 -13.48 16.32 5.28 0.09 -13.40 16 10 C -0.29 -6.48 5.89 -104.73 -0.62 -7.10 16 11 C -0.06 -1.38 9.47 -39.61 -0.38 -1.75 16 12 C -0.18 -4.36 8.63 -39.27 -0.34 -4.70 16 13 C 0.13 3.27 5.58 -106.80 -0.60 2.67 16 14 C -0.44 -10.95 9.04 -37.75 -0.34 -11.30 16 15 H 0.09 2.01 7.91 -52.48 -0.42 1.60 16 16 C 0.07 1.72 5.14 -17.31 -0.09 1.63 16 17 N -0.77 -18.43 10.95 55.56 0.61 -17.82 16 18 Si 0.91 17.23 29.60 -169.99 -5.03 12.20 16 19 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 20 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 21 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 22 C -0.24 -5.78 9.73 -39.27 -0.38 -6.16 16 23 C -0.02 -0.50 9.52 -39.61 -0.38 -0.88 16 24 C -0.12 -1.31 9.69 -39.57 -0.38 -1.69 16 25 C -0.11 -1.09 9.98 -39.46 -0.39 -1.49 16 26 C 0.08 0.85 6.72 -39.12 -0.26 0.59 16 27 O -0.49 -5.06 13.29 -34.22 -0.45 -5.51 16 28 H 0.06 0.46 7.66 -51.93 -0.40 0.07 16 29 H 0.06 0.38 7.66 -51.92 -0.40 -0.02 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.14 1.37 6.30 -52.49 -0.33 1.04 16 32 H 0.07 1.01 8.08 -51.93 -0.42 0.60 16 33 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.40 6.19 6.47 -40.82 -0.26 5.93 16 35 H 0.09 1.68 6.37 -52.49 -0.33 1.35 16 36 H 0.12 2.98 6.16 -52.49 -0.32 2.66 16 37 H 0.29 6.18 8.29 -40.82 -0.34 5.84 16 38 H 0.10 2.21 8.06 -52.48 -0.42 1.78 16 39 H 0.10 2.28 7.63 -52.49 -0.40 1.88 16 40 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 42 H 0.38 2.12 9.06 45.56 0.41 2.53 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -30.68 362.67 -8.58 -39.26 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -4.12 Total: 13.84 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -4.45 Total: -17.63 kcal Atomic # 7 Polarization: -30.66 SS G_CDS: 0.27 Total: -30.40 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.72 Total: -22.74 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.68 -8.58 -39.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536173871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.270 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds