Wall clock time and date at job start Tue Mar 31 2020 14:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35998 * 116.99995 * 2 1 4 4 C 1.38562 * 120.07051 * 359.96818 * 3 2 1 5 5 C 1.38242 * 119.99418 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.92496 * 180.02562 * 5 4 3 7 7 N 1.46493 * 109.47068 * 90.00033 * 6 5 4 8 8 C 1.34779 * 120.00069 * 179.97438 * 7 6 5 9 9 O 1.21594 * 119.99915 * 0.02562 * 8 7 6 10 10 C 1.47641 * 120.00195 * 179.97438 * 8 7 6 11 11 C 1.40011 * 119.89439 * 359.73421 * 10 8 7 12 12 C 1.36321 * 120.10626 * 179.75829 * 11 10 8 13 13 C 1.40884 * 119.88968 * 0.50752 * 12 11 10 14 14 C 1.41112 * 120.10367 * 179.71935 * 13 12 11 15 15 H 1.08003 * 119.99963 * 204.65260 * 14 13 12 16 16 C 1.40227 * 119.99816 * 24.65241 * 14 13 12 17 17 N 1.30641 * 119.99878 * 17.86763 * 16 14 13 18 18 Si 1.86796 * 119.99887 * 197.86119 * 16 14 13 19 19 H 1.48506 * 109.47052 * 90.00436 * 18 16 14 20 20 H 1.48505 * 109.47283 * 209.99960 * 18 16 14 21 21 H 1.48492 * 109.47577 * 330.00755 * 18 16 14 22 22 C 1.40892 * 119.79396 * 359.74508 * 13 12 11 23 23 C 1.36307 * 119.89367 * 359.97438 * 22 13 12 24 24 C 1.38253 * 120.15078 * 359.97438 * 5 4 3 25 25 C 1.38243 * 120.14258 * 359.75954 * 24 5 4 26 26 C 1.38565 * 120.00204 * 0.51706 * 25 24 5 27 27 O 1.35995 * 120.07372 * 179.73983 * 26 25 24 28 28 H 1.09002 * 109.47763 * 300.00692 * 1 2 3 29 29 H 1.09007 * 109.46564 * 60.00879 * 1 2 3 30 30 H 1.09005 * 109.47331 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.00090 * 0.02562 * 4 3 2 32 32 H 1.08997 * 109.46898 * 210.00210 * 6 5 4 33 33 H 1.09003 * 109.46884 * 329.99645 * 6 5 4 34 34 H 0.97001 * 120.00182 * 0.02562 * 7 6 5 35 35 H 1.07999 * 119.94957 * 0.02562 * 11 10 8 36 36 H 1.08002 * 120.05390 * 180.22658 * 12 11 10 37 37 H 0.97002 * 119.99982 * 179.97438 * 17 16 14 38 38 H 1.08005 * 120.05138 * 179.97438 * 22 13 12 39 39 H 1.08000 * 119.95174 * 179.97438 * 23 22 13 40 40 H 1.08000 * 119.92771 * 180.02562 * 24 5 4 41 41 H 1.08001 * 119.99881 * 180.25951 * 25 24 5 42 42 H 0.96700 * 113.99651 * 269.72169 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3748 -0.0007 5 6 1.9224 3.6057 -0.0012 6 6 1.1016 4.8696 -0.0013 7 7 0.8361 5.2795 1.3798 8 6 0.1149 6.3912 1.6260 9 8 -0.3157 7.0536 0.7017 10 6 -0.1532 6.8041 3.0179 11 6 0.3380 6.0361 4.0805 12 6 0.0972 6.4159 5.3673 13 6 -0.6564 7.5776 5.6271 14 6 -0.9134 7.9717 6.9575 15 1 -1.7749 8.5828 7.1828 16 6 -0.0502 7.5699 7.9869 17 7 1.1515 7.1436 7.7026 18 14 -0.6185 7.6445 9.7648 19 1 -1.2573 6.3559 10.1347 20 1 0.5499 7.8893 10.6481 21 1 -1.5999 8.7473 9.9250 22 6 -1.1531 8.3443 4.5545 23 6 -0.9023 7.9596 3.2711 24 6 3.3029 3.6798 -0.0005 25 6 4.0602 2.5233 0.0057 26 6 3.4359 1.2863 0.0004 27 8 4.1795 0.1476 0.0012 28 1 -0.3635 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 0.2146 2.3196 -0.0008 32 1 1.6500 5.6588 -0.5156 33 1 0.1572 4.6894 -0.5149 34 1 1.1799 4.7513 2.1171 35 1 0.9123 5.1436 3.8803 36 1 0.4796 5.8249 6.1864 37 1 1.7488 6.8660 8.4147 38 1 -1.7317 9.2353 4.7489 39 1 -1.2830 8.5464 2.4482 40 1 3.7908 4.6433 -0.0005 41 1 5.1385 2.5839 0.0104 42 1 4.3947 -0.1821 -0.8820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000536173871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:00 Heat of formation + Delta-G solvation = -97.695204 kcal Electronic energy + Delta-G solvation = -26045.104383 eV Core-core repulsion = 22147.200525 eV Total energy + Delta-G solvation = -3897.903859 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.53707 -40.71682 -39.03895 -38.77639 -37.93909 -35.67230 -35.45655 -32.44733 -31.46132 -31.29498 -31.01554 -28.61951 -27.82185 -26.32214 -23.68851 -23.38760 -22.87144 -22.45328 -21.28429 -19.67406 -19.36843 -18.86432 -18.04923 -17.52123 -17.33919 -16.99200 -16.74522 -16.20519 -15.95926 -15.76268 -15.59041 -15.15443 -15.07019 -15.05700 -14.67789 -14.42308 -13.94320 -13.88207 -13.65375 -13.26502 -13.19724 -13.07602 -12.86654 -12.84792 -12.61385 -12.38078 -12.27135 -12.06940 -11.76527 -11.58434 -11.37170 -11.13037 -10.78352 -10.10951 -9.87206 -9.57749 -9.40958 -9.17679 -8.79658 -6.48592 0.01510 0.30745 0.43785 1.15020 1.38826 1.43382 1.53347 2.12069 2.17358 2.21005 2.31353 2.76577 2.78404 3.19073 3.52938 3.68802 3.80525 4.04439 4.22793 4.23387 4.29637 4.30886 4.33871 4.45083 4.53686 4.59225 4.67117 4.71283 4.83596 4.92510 5.02725 5.05444 5.15847 5.23050 5.29696 5.48422 5.49276 5.58833 5.64018 5.82022 5.94110 5.99437 6.21979 6.22569 6.53867 6.66990 6.77019 6.85377 6.88680 7.41347 8.15450 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013729 B = 0.002565 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.057505 B =10915.467784 C =11844.450564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.087 3.913 4 C -0.177 4.177 5 C -0.077 4.077 6 C 0.166 3.834 7 N -0.721 5.721 8 C 0.574 3.426 9 O -0.603 6.603 10 C -0.293 4.293 11 C -0.053 4.053 12 C -0.198 4.198 13 C 0.102 3.898 14 C -0.473 4.473 15 H 0.086 0.914 16 C 0.038 3.962 17 N -0.798 5.798 18 Si 0.988 3.012 19 H -0.259 1.259 20 H -0.265 1.265 21 H -0.257 1.257 22 C -0.253 4.253 23 C -0.031 4.031 24 C -0.121 4.121 25 C -0.106 4.106 26 C 0.071 3.929 27 O -0.499 6.499 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.121 0.879 31 H 0.142 0.858 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.406 0.594 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.297 0.703 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.144 0.856 41 H 0.159 0.841 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.812 -13.870 -11.388 18.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.239 6.239 3 C 0.041 3.959 4 C -0.196 4.196 5 C -0.078 4.078 6 C 0.043 3.957 7 N -0.373 5.373 8 C 0.368 3.632 9 O -0.487 6.487 10 C -0.298 4.298 11 C -0.072 4.072 12 C -0.218 4.218 13 C 0.099 3.901 14 C -0.500 4.500 15 H 0.104 0.896 16 C -0.181 4.181 17 N -0.421 5.421 18 Si 0.808 3.192 19 H -0.184 1.184 20 H -0.189 1.189 21 H -0.181 1.181 22 C -0.273 4.273 23 C -0.050 4.050 24 C -0.140 4.140 25 C -0.124 4.124 26 C 0.025 3.975 27 O -0.311 6.311 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.139 0.861 31 H 0.160 0.840 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.242 0.758 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.161 0.839 41 H 0.176 0.824 42 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 4.801 -13.655 -11.365 18.403 hybrid contribution -0.255 0.044 0.515 0.577 sum 4.546 -13.611 -10.850 17.990 Atomic orbital electron populations 1.23352 0.76721 1.05638 1.02079 1.86113 1.23054 1.26033 1.88656 1.19591 0.92164 0.85152 0.98988 1.21196 1.00862 0.91006 1.06552 1.19627 0.94209 0.93281 1.00634 1.20124 0.98847 0.93358 0.83337 1.45820 1.55648 1.27124 1.08738 1.18363 0.76531 0.79663 0.88678 1.90621 1.55073 1.55902 1.47125 1.19163 1.15691 1.03507 0.91408 1.20700 0.96719 0.97519 0.92308 1.21002 1.06370 0.98642 0.95744 1.18136 0.88571 0.89972 0.93464 1.20126 1.09561 1.28256 0.92071 0.89628 1.26928 0.93454 0.91376 1.06386 1.69762 1.05841 1.28443 1.38048 0.85105 0.79202 0.80170 0.74771 1.18370 1.18949 1.18075 1.20866 1.11425 1.02501 0.92491 1.20513 0.94311 0.94333 0.95887 1.21122 0.92548 0.99370 1.00950 1.21457 1.01742 0.90019 0.99195 1.18004 0.86267 0.87262 1.05917 1.84838 1.71541 1.39601 1.35143 0.92505 0.91512 0.86091 0.84000 0.90654 0.91076 0.75775 0.86299 0.86973 0.89193 0.87720 0.87728 0.83855 0.82385 0.73633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.32 -6.88 10.28 -79.66 -0.82 -7.70 16 3 C 0.09 1.90 6.70 22.57 0.15 2.06 16 4 C -0.18 -3.73 8.69 22.35 0.19 -3.54 16 5 C -0.08 -1.67 5.25 -19.86 -0.10 -1.78 16 6 C 0.17 4.31 5.79 85.64 0.50 4.81 16 7 N -0.72 -22.84 5.50 -469.89 -2.58 -25.42 16 8 C 0.57 23.67 7.76 86.73 0.67 24.34 16 9 O -0.60 -27.98 16.32 -4.01 -0.07 -28.05 16 10 C -0.29 -13.28 5.89 -19.93 -0.12 -13.39 16 11 C -0.05 -2.35 9.47 22.25 0.21 -2.14 16 12 C -0.20 -9.82 8.63 22.47 0.19 -9.62 16 13 C 0.10 5.28 5.58 -21.28 -0.12 5.16 16 14 C -0.47 -23.84 9.04 23.46 0.21 -23.63 16 15 H 0.09 4.14 7.91 -2.91 -0.02 4.12 16 16 C 0.04 1.75 5.14 85.35 0.44 2.19 16 17 N -0.80 -38.16 10.95 21.87 0.24 -37.92 16 18 Si 0.99 34.77 29.60 68.60 2.03 36.80 16 19 H -0.26 -8.86 7.11 99.48 0.71 -8.16 16 20 H -0.27 -8.84 7.11 99.48 0.71 -8.14 16 21 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 22 C -0.25 -12.52 9.73 22.47 0.22 -12.31 16 23 C -0.03 -1.49 9.52 22.25 0.21 -1.28 16 24 C -0.12 -2.35 9.69 22.27 0.22 -2.14 16 25 C -0.11 -1.92 9.98 22.35 0.22 -1.69 16 26 C 0.07 1.47 6.72 22.57 0.15 1.62 16 27 O -0.50 -9.43 13.29 -79.63 -1.06 -10.49 16 28 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 29 H 0.07 0.79 7.66 -2.38 -0.02 0.77 16 30 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.14 2.68 6.30 -2.91 -0.02 2.66 16 32 H 0.08 1.97 8.08 -2.39 -0.02 1.95 16 33 H 0.07 1.86 8.08 -2.39 -0.02 1.84 16 34 H 0.41 11.81 6.47 -92.71 -0.60 11.21 16 35 H 0.12 4.35 6.37 -2.91 -0.02 4.33 16 36 H 0.11 5.65 6.16 -2.91 -0.02 5.64 16 37 H 0.30 12.63 8.29 -92.71 -0.77 11.86 16 38 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 39 H 0.10 4.81 7.63 -2.91 -0.02 4.79 16 40 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 41 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 42 H 0.41 3.68 9.06 -74.06 -0.67 3.01 16 Total: -1.00 -65.71 362.67 1.92 -63.78 By element: Atomic # 1 Polarization: 39.18 SS G_CDS: -0.18 Total: 39.00 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 4.36 Total: -30.00 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -2.34 Total: -63.35 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -1.94 Total: -46.24 kcal Atomic # 14 Polarization: 34.77 SS G_CDS: 2.03 Total: 36.80 kcal Total: -65.71 1.92 -63.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536173871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.914 kcal (2) G-P(sol) polarization free energy of solvation -65.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds