Wall clock time and date at job start Tue Mar 31 2020 14:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00519 * 2 1 4 4 C 1.52992 * 109.47535 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47325 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47157 * 179.97438 * 5 4 3 7 7 C 1.53009 * 109.46848 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46667 * 179.97438 * 7 6 5 9 9 S 1.65598 * 119.99364 * 164.99946 * 8 7 6 10 10 O 1.42098 * 106.40579 * 311.46117 * 9 8 7 11 11 O 1.42104 * 106.40061 * 178.54303 * 9 8 7 12 12 C 1.76195 * 107.21796 * 65.00334 * 9 8 7 13 13 C 1.38662 * 119.87952 * 270.24723 * 12 9 8 14 14 C 1.38613 * 120.50337 * 180.30428 * 13 12 9 15 15 C 1.37635 * 120.24644 * 359.44170 * 14 13 12 16 16 C 1.40700 * 119.74734 * 0.27966 * 15 14 13 17 17 C 1.41393 * 120.24808 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00329 * 204.39358 * 17 16 15 19 19 C 1.39942 * 119.99793 * 24.38823 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.86190 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.85679 * 19 17 16 22 22 H 1.48504 * 109.46865 * 90.00477 * 21 19 17 23 23 H 1.48493 * 109.47164 * 210.00257 * 21 19 17 24 24 H 1.48499 * 109.47067 * 330.00626 * 21 19 17 25 25 C 1.37597 * 119.87685 * 90.00071 * 12 9 8 26 26 H 1.08997 * 109.46944 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46836 * 300.00185 * 1 2 3 28 28 H 1.08997 * 109.46648 * 59.99885 * 1 2 3 29 29 H 1.08999 * 109.46966 * 59.99276 * 3 2 1 30 30 H 1.09007 * 109.46799 * 300.00103 * 3 2 1 31 31 H 1.08999 * 109.47652 * 59.99614 * 4 3 2 32 32 H 1.09007 * 109.47094 * 299.99840 * 4 3 2 33 33 H 1.08994 * 109.47104 * 59.99748 * 5 4 3 34 34 H 1.09001 * 109.46919 * 299.99493 * 5 4 3 35 35 H 1.08994 * 109.47287 * 59.99900 * 6 5 4 36 36 H 1.08995 * 109.47181 * 299.99408 * 6 5 4 37 37 H 1.08994 * 109.47041 * 60.00016 * 7 6 5 38 38 H 1.08995 * 109.46964 * 299.99808 * 7 6 5 39 39 H 0.97000 * 120.00105 * 345.00850 * 8 7 6 40 40 H 1.07998 * 119.74547 * 0.04857 * 13 12 9 41 41 H 1.07991 * 119.87429 * 179.72331 * 14 13 12 42 42 H 1.07998 * 120.12988 * 180.25464 * 15 14 13 43 43 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 44 44 H 1.08005 * 120.12756 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1579 2.5822 0.0000 6 6 5.6831 2.4614 0.0000 7 6 6.3054 3.8592 0.0000 8 7 7.7659 3.7434 0.0006 9 16 8.7008 5.0589 -0.3705 10 8 8.1621 5.6102 -1.5642 11 8 10.0525 4.6373 -0.2500 12 6 8.4390 6.2580 0.8937 13 6 7.4237 7.1929 0.7594 14 6 7.2104 8.1460 1.7430 15 6 7.9989 8.1668 2.8709 16 6 9.0284 7.2195 3.0206 17 6 9.8451 7.2315 4.1748 18 1 10.8377 6.8076 4.1384 19 6 9.3672 7.7928 5.3642 20 7 8.0834 7.9855 5.5271 21 14 10.5621 8.2670 6.7196 22 1 11.0003 9.6723 6.5238 23 1 9.8920 8.1367 8.0383 24 1 11.7440 7.3690 6.6740 25 6 9.2396 6.2602 2.0128 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.6887 1.8464 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 3.8568 0.6438 -0.8908 32 1 3.8575 0.6435 0.8892 33 1 3.8366 3.1226 0.8904 34 1 3.8360 3.1237 -0.8896 35 1 6.0047 1.9208 -0.8901 36 1 6.0047 1.9202 0.8898 37 1 5.9838 4.4000 0.8899 38 1 5.9838 4.4000 -0.8900 39 1 8.1852 2.8962 0.2182 40 1 6.7971 7.1808 -0.1201 41 1 6.4196 8.8720 1.6260 42 1 7.8283 8.9076 3.6380 43 1 7.7521 8.3742 6.3518 44 1 10.0270 5.5284 2.1174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619480013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:11 Heat of formation + Delta-G solvation = -129.238542 kcal Electronic energy + Delta-G solvation = -24910.652597 eV Core-core repulsion = 21146.824868 eV Total energy + Delta-G solvation = -3763.827729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -38.34292 -37.65020 -36.82176 -36.43981 -35.28781 -34.02954 -33.85175 -30.09158 -30.06854 -29.79458 -26.98904 -25.50573 -24.88344 -22.10958 -21.87388 -21.32792 -20.97458 -19.02170 -17.96012 -16.94783 -16.63189 -16.57888 -15.98408 -15.90059 -15.51256 -15.26768 -15.11135 -14.77854 -14.37902 -13.97983 -13.47984 -13.35580 -13.05996 -12.67046 -12.60974 -12.52918 -11.98159 -11.91387 -11.62427 -11.60601 -11.58761 -11.44133 -11.39954 -11.38087 -11.16650 -11.00696 -10.89913 -10.86855 -10.76404 -10.60980 -9.97603 -9.78997 -9.66048 -9.37058 -9.12887 -8.04979 -7.71951 -6.94363 -4.54917 1.04979 2.18973 2.61944 2.99003 3.03213 3.05819 3.40238 3.62127 3.81770 4.25142 4.42772 4.66060 4.67649 4.77600 4.94502 4.95711 5.03474 5.07382 5.14636 5.23239 5.31385 5.38447 5.40805 5.47262 5.63438 5.69713 5.78853 5.86021 6.02546 6.07183 6.14785 6.16798 6.26225 6.64606 6.75118 6.83989 6.84592 7.02001 7.19367 7.25117 7.37582 7.71556 7.80000 7.93187 8.39226 8.65643 8.70605 10.01068 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011486 B = 0.002697 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.223734 B =10380.314327 C =11863.619292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.059 3.941 4 C -0.118 4.118 5 C -0.118 4.118 6 C -0.124 4.124 7 C 0.118 3.882 8 N -1.122 6.122 9 S 2.691 3.309 10 O -0.976 6.976 11 O -0.974 6.974 12 C -0.632 4.632 13 C -0.150 4.150 14 C -0.121 4.121 15 C -0.119 4.119 16 C 0.091 3.909 17 C -0.460 4.460 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.794 5.794 21 Si 0.912 3.088 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.260 1.260 25 C -0.123 4.123 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.413 0.587 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.283 0.717 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.325 -9.933 -6.130 16.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.018 4.018 4 C -0.156 4.156 5 C -0.156 4.156 6 C -0.163 4.163 7 C -0.008 4.008 8 N -0.880 5.880 9 S 2.787 3.213 10 O -0.966 6.966 11 O -0.964 6.964 12 C -0.723 4.723 13 C -0.171 4.171 14 C -0.140 4.140 15 C -0.139 4.139 16 C 0.087 3.913 17 C -0.489 4.489 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.736 3.264 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.184 1.184 25 C -0.145 4.145 26 H 0.103 0.897 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.246 0.754 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.142 0.858 43 H 0.094 0.906 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.931 -9.792 -6.754 16.155 hybrid contribution -0.016 0.464 1.565 1.632 sum -10.948 -9.328 -5.189 15.290 Atomic orbital electron populations 1.22732 0.81090 1.02678 1.00007 1.87866 1.19691 1.28413 1.95447 1.22610 0.94403 0.84437 1.00318 1.21518 0.92706 0.97849 1.03480 1.21461 0.94799 0.96329 1.03023 1.21743 0.94803 0.96644 1.03083 1.21269 0.78861 0.98158 1.02560 1.55544 1.16071 1.27426 1.88945 1.01585 0.72389 0.73006 0.74362 1.93506 1.79982 1.78519 1.44623 1.93536 1.33413 1.81966 1.87514 1.29753 1.08662 1.17497 1.16423 1.20081 0.98929 0.98617 0.99444 1.20806 0.99638 0.98566 0.95014 1.21638 0.97133 0.98743 0.96371 1.17697 0.91997 0.89612 0.91986 1.19631 1.01554 1.33878 0.93845 0.89879 1.25941 0.95468 0.93006 0.99922 1.69785 1.13728 1.31749 1.26678 0.86236 0.81025 0.80079 0.79025 1.19143 1.20218 1.18416 1.20786 0.99713 0.99769 0.94215 0.89713 0.94046 0.94109 0.93159 0.93259 0.91069 0.90984 0.91122 0.91290 0.91110 0.90993 0.91248 0.90466 0.75353 0.87623 0.88410 0.85752 0.90592 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.40 -3.94 10.70 -35.23 -0.38 -4.32 16 3 C 0.06 0.50 5.94 37.15 0.22 0.72 16 4 C -0.12 -0.99 5.58 -26.74 -0.15 -1.14 16 5 C -0.12 -0.99 5.21 -26.73 -0.14 -1.13 16 6 C -0.12 -1.18 5.36 -26.73 -0.14 -1.32 16 7 C 0.12 1.46 6.22 -4.03 -0.03 1.44 16 8 N -1.12 -15.80 6.00 -10.61 -0.06 -15.87 16 9 S 2.69 49.74 5.73 -107.50 -0.62 49.13 16 10 O -0.98 -19.64 16.75 -57.17 -0.96 -20.59 16 11 O -0.97 -20.32 17.27 -57.17 -0.99 -21.30 16 12 C -0.63 -13.62 5.94 -39.66 -0.24 -13.86 16 13 C -0.15 -3.19 9.53 -39.29 -0.37 -3.56 16 14 C -0.12 -2.67 10.02 -39.66 -0.40 -3.07 16 15 C -0.12 -2.94 8.70 -38.87 -0.34 -3.28 16 16 C 0.09 2.33 5.58 -106.82 -0.60 1.73 16 17 C -0.46 -11.74 9.05 -37.74 -0.34 -12.08 16 18 H 0.08 2.05 7.91 -52.49 -0.42 1.64 16 19 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 20 N -0.79 -19.44 10.95 55.55 0.61 -18.84 16 21 Si 0.91 17.98 29.60 -169.99 -5.03 12.95 16 22 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 23 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 25 C -0.12 -2.95 9.26 -38.87 -0.36 -3.31 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.95 7.75 -51.93 -0.40 0.55 16 39 H 0.41 4.86 8.65 -34.47 -0.30 4.57 16 40 H 0.11 2.01 7.61 -52.49 -0.40 1.62 16 41 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.12 3.12 6.15 -52.49 -0.32 2.80 16 43 H 0.28 6.28 8.30 -40.82 -0.34 5.95 16 44 H 0.11 2.56 7.60 -52.48 -0.40 2.16 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -31.04 380.59 -10.41 -41.45 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.87 Total: 7.48 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: -1.86 Total: -35.83 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.54 Total: -34.70 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -2.32 Total: -46.22 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Atomic # 16 Polarization: 49.74 SS G_CDS: -0.62 Total: 49.13 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.04 -10.41 -41.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619480013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.788 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds