Wall clock time and date at job start Tue Mar 31 2020 14:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00519 * 2 1 4 4 C 1.52992 * 109.47535 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47325 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47157 * 179.97438 * 5 4 3 7 7 C 1.53009 * 109.46848 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46667 * 179.97438 * 7 6 5 9 9 S 1.65598 * 119.99364 * 164.99946 * 8 7 6 10 10 O 1.42098 * 106.40579 * 311.46117 * 9 8 7 11 11 O 1.42104 * 106.40061 * 178.54303 * 9 8 7 12 12 C 1.76195 * 107.21796 * 65.00334 * 9 8 7 13 13 C 1.38662 * 119.87952 * 270.24723 * 12 9 8 14 14 C 1.38613 * 120.50337 * 180.30428 * 13 12 9 15 15 C 1.37635 * 120.24644 * 359.44170 * 14 13 12 16 16 C 1.40700 * 119.74734 * 0.27966 * 15 14 13 17 17 C 1.41393 * 120.24808 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00329 * 204.39358 * 17 16 15 19 19 C 1.39942 * 119.99793 * 24.38823 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.86190 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.85679 * 19 17 16 22 22 H 1.48504 * 109.46865 * 90.00477 * 21 19 17 23 23 H 1.48493 * 109.47164 * 210.00257 * 21 19 17 24 24 H 1.48499 * 109.47067 * 330.00626 * 21 19 17 25 25 C 1.37597 * 119.87685 * 90.00071 * 12 9 8 26 26 H 1.08997 * 109.46944 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46836 * 300.00185 * 1 2 3 28 28 H 1.08997 * 109.46648 * 59.99885 * 1 2 3 29 29 H 1.08999 * 109.46966 * 59.99276 * 3 2 1 30 30 H 1.09007 * 109.46799 * 300.00103 * 3 2 1 31 31 H 1.08999 * 109.47652 * 59.99614 * 4 3 2 32 32 H 1.09007 * 109.47094 * 299.99840 * 4 3 2 33 33 H 1.08994 * 109.47104 * 59.99748 * 5 4 3 34 34 H 1.09001 * 109.46919 * 299.99493 * 5 4 3 35 35 H 1.08994 * 109.47287 * 59.99900 * 6 5 4 36 36 H 1.08995 * 109.47181 * 299.99408 * 6 5 4 37 37 H 1.08994 * 109.47041 * 60.00016 * 7 6 5 38 38 H 1.08995 * 109.46964 * 299.99808 * 7 6 5 39 39 H 0.97000 * 120.00105 * 345.00850 * 8 7 6 40 40 H 1.07998 * 119.74547 * 0.04857 * 13 12 9 41 41 H 1.07991 * 119.87429 * 179.72331 * 14 13 12 42 42 H 1.07998 * 120.12988 * 180.25464 * 15 14 13 43 43 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 44 44 H 1.08005 * 120.12756 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1579 2.5822 0.0000 6 6 5.6831 2.4614 0.0000 7 6 6.3054 3.8592 0.0000 8 7 7.7659 3.7434 0.0006 9 16 8.7008 5.0589 -0.3705 10 8 8.1621 5.6102 -1.5642 11 8 10.0525 4.6373 -0.2500 12 6 8.4390 6.2580 0.8937 13 6 7.4237 7.1929 0.7594 14 6 7.2104 8.1460 1.7430 15 6 7.9989 8.1668 2.8709 16 6 9.0284 7.2195 3.0206 17 6 9.8451 7.2315 4.1748 18 1 10.8377 6.8076 4.1384 19 6 9.3672 7.7928 5.3642 20 7 8.0834 7.9855 5.5271 21 14 10.5621 8.2670 6.7196 22 1 11.0003 9.6723 6.5238 23 1 9.8920 8.1367 8.0383 24 1 11.7440 7.3690 6.6740 25 6 9.2396 6.2602 2.0128 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.6887 1.8464 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 3.8568 0.6438 -0.8908 32 1 3.8575 0.6435 0.8892 33 1 3.8366 3.1226 0.8904 34 1 3.8360 3.1237 -0.8896 35 1 6.0047 1.9208 -0.8901 36 1 6.0047 1.9202 0.8898 37 1 5.9838 4.4000 0.8899 38 1 5.9838 4.4000 -0.8900 39 1 8.1852 2.8962 0.2182 40 1 6.7971 7.1808 -0.1201 41 1 6.4196 8.8720 1.6260 42 1 7.8283 8.9076 3.6380 43 1 7.7521 8.3742 6.3518 44 1 10.0270 5.5284 2.1174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619480013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:10 Heat of formation + Delta-G solvation = -149.642297 kcal Electronic energy + Delta-G solvation = -24911.537371 eV Core-core repulsion = 21146.824868 eV Total energy + Delta-G solvation = -3764.712502 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.44039 -38.99345 -38.27859 -37.48351 -36.88531 -35.66797 -34.91869 -31.90904 -31.57744 -30.88437 -27.61966 -27.34353 -25.67256 -23.67041 -22.94544 -22.70734 -22.04597 -20.53043 -19.60137 -18.38919 -17.73105 -17.37109 -17.24924 -17.13746 -16.81568 -16.55364 -16.17663 -15.99484 -15.76293 -15.21781 -15.04753 -14.74813 -14.30410 -13.96700 -13.72341 -13.41229 -13.31991 -13.29283 -13.14662 -13.06890 -13.04264 -12.97628 -12.79994 -12.59903 -12.28423 -12.24506 -12.18992 -11.85556 -11.75963 -11.54977 -11.46348 -11.31214 -11.14999 -10.59680 -10.38975 -9.84200 -9.55920 -8.73634 -6.45237 -0.45631 0.41558 0.84575 1.37037 1.46155 1.49819 2.16855 2.17238 2.55872 2.80563 2.85255 3.48467 3.53875 3.96218 4.01264 4.04550 4.24214 4.31327 4.40129 4.43234 4.45703 4.52676 4.55883 4.61499 4.68225 4.84033 4.85129 4.88777 4.90933 4.93667 4.98874 5.07487 5.07902 5.20378 5.27255 5.41649 5.42680 5.48726 5.57293 5.89303 5.94391 6.10530 6.16327 6.25857 6.52867 6.79666 6.84891 8.24190 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011486 B = 0.002697 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.223734 B =10380.314327 C =11863.619292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.421 6.421 3 C 0.056 3.944 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.118 4.118 7 C 0.108 3.892 8 N -1.106 6.106 9 S 2.722 3.278 10 O -0.986 6.986 11 O -0.998 6.998 12 C -0.638 4.638 13 C -0.147 4.147 14 C -0.122 4.122 15 C -0.142 4.142 16 C 0.060 3.940 17 C -0.498 4.498 18 H 0.077 0.923 19 C 0.038 3.962 20 N -0.820 5.820 21 Si 0.983 3.017 22 H -0.262 1.262 23 H -0.265 1.265 24 H -0.260 1.260 25 C -0.146 4.146 26 H 0.095 0.905 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.426 0.574 40 H 0.134 0.866 41 H 0.127 0.873 42 H 0.113 0.887 43 H 0.292 0.708 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.383 -10.459 -6.648 17.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.341 6.341 3 C -0.021 4.021 4 C -0.152 4.152 5 C -0.152 4.152 6 C -0.157 4.157 7 C -0.017 4.017 8 N -0.869 5.869 9 S 2.814 3.186 10 O -0.976 6.976 11 O -0.988 6.988 12 C -0.727 4.727 13 C -0.167 4.167 14 C -0.142 4.142 15 C -0.162 4.162 16 C 0.057 3.943 17 C -0.527 4.527 18 H 0.095 0.905 19 C -0.178 4.178 20 N -0.446 5.446 21 Si 0.803 3.197 22 H -0.187 1.187 23 H -0.189 1.189 24 H -0.184 1.184 25 C -0.167 4.167 26 H 0.113 0.887 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.263 0.737 40 H 0.152 0.848 41 H 0.145 0.855 42 H 0.131 0.869 43 H 0.103 0.897 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.999 -10.301 -7.258 17.400 hybrid contribution 0.189 0.554 1.604 1.708 sum -11.810 -9.747 -5.654 16.323 Atomic orbital electron populations 1.22907 0.79712 1.03700 1.00776 1.87824 1.21356 1.29273 1.95619 1.22675 0.94331 0.84150 1.00914 1.21462 0.92845 0.97644 1.03208 1.21422 0.93875 0.96467 1.03450 1.21716 0.95323 0.94804 1.03864 1.21524 0.77458 1.00179 1.02562 1.55196 1.16750 1.26453 1.88499 1.00689 0.71857 0.72793 0.73224 1.93490 1.80181 1.79308 1.44628 1.93500 1.35518 1.82205 1.87574 1.30277 1.07644 1.18457 1.16311 1.20482 0.98712 0.97649 0.99894 1.21150 0.99650 0.99176 0.94174 1.21649 0.98166 0.98989 0.97386 1.18061 0.92819 0.90525 0.92865 1.19847 1.01736 1.36041 0.95072 0.90455 1.26728 0.97082 0.92276 1.01713 1.69813 1.15110 1.31934 1.27739 0.85189 0.78608 0.79609 0.76281 1.18664 1.18939 1.18398 1.20859 1.00672 0.99949 0.95191 0.88688 0.93420 0.93170 0.92838 0.92373 0.91048 0.91556 0.91183 0.90444 0.90037 0.90599 0.91852 0.89948 0.73742 0.84845 0.85478 0.86921 0.89735 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -7.89 10.70 -148.98 -1.59 -9.48 16 3 C 0.06 0.85 5.94 71.98 0.43 1.28 16 4 C -0.11 -1.71 5.58 30.59 0.17 -1.54 16 5 C -0.11 -1.67 5.21 30.59 0.16 -1.51 16 6 C -0.12 -1.96 5.36 30.60 0.16 -1.80 16 7 C 0.11 2.45 6.22 86.38 0.54 2.99 16 8 N -1.11 -29.15 6.00 -187.48 -1.12 -30.27 16 9 S 2.72 97.21 5.73 -56.49 -0.32 96.89 16 10 O -0.99 -37.64 16.75 -128.00 -2.14 -39.78 16 11 O -1.00 -41.00 17.27 -128.00 -2.21 -43.21 16 12 C -0.64 -27.26 5.94 22.22 0.13 -27.13 16 13 C -0.15 -6.06 9.53 22.46 0.21 -5.84 16 14 C -0.12 -5.34 10.02 22.22 0.22 -5.12 16 15 C -0.14 -7.16 8.70 22.73 0.20 -6.97 16 16 C 0.06 3.21 5.58 -21.29 -0.12 3.09 16 17 C -0.50 -26.36 9.05 23.46 0.21 -26.14 16 18 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 19 C 0.04 1.84 5.14 85.25 0.44 2.27 16 20 N -0.82 -40.84 10.95 21.83 0.24 -40.60 16 21 Si 0.98 37.10 29.60 68.60 2.03 39.13 16 22 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 23 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 24 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 25 C -0.15 -7.12 9.26 22.73 0.21 -6.91 16 26 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.81 7.75 -2.39 -0.02 1.79 16 39 H 0.43 9.20 8.65 -96.74 -0.84 8.37 16 40 H 0.13 4.72 7.61 -2.91 -0.02 4.70 16 41 H 0.13 4.67 8.06 -2.92 -0.02 4.65 16 42 H 0.11 5.84 6.15 -2.91 -0.02 5.82 16 43 H 0.29 13.03 8.30 -92.70 -0.77 12.26 16 44 H 0.11 5.21 7.60 -2.91 -0.02 5.18 16 Total: -1.00 -66.83 380.59 -0.76 -67.59 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.15 Total: 31.51 kcal Atomic # 6 Polarization: -75.99 SS G_CDS: 4.22 Total: -71.77 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -0.89 Total: -70.87 kcal Atomic # 8 Polarization: -86.53 SS G_CDS: -5.95 Total: -92.47 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.13 kcal Atomic # 16 Polarization: 97.21 SS G_CDS: -0.32 Total: 96.89 kcal Total: -66.83 -0.76 -67.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619480013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.053 kcal (2) G-P(sol) polarization free energy of solvation -66.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds