Wall clock time and date at job start Tue Mar 31 2020 14:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35708 * 117.00011 * 2 1 4 4 C 1.38551 * 120.12200 * 0.24914 * 3 2 1 5 5 C 1.38239 * 120.23621 * 180.29603 * 4 3 2 6 6 C 1.38278 * 120.47513 * 359.73173 * 5 4 3 7 7 C 1.38504 * 120.23309 * 359.97438 * 6 5 4 8 8 O 1.35709 * 120.12376 * 179.97438 * 7 6 5 9 9 C 1.40217 * 120.12063 * 179.97438 * 3 2 1 10 10 C 1.47139 * 120.23243 * 359.97438 * 9 3 2 11 11 N 1.29534 * 120.00207 * 179.72384 * 10 9 3 12 12 C 1.46503 * 120.00201 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47448 * 115.00031 * 12 11 10 14 14 C 1.38299 * 119.93217 * 269.73027 * 13 12 11 15 15 C 1.38093 * 120.06953 * 179.72477 * 14 13 12 16 16 C 1.38883 * 119.92808 * 0.56550 * 15 14 13 17 17 O 1.35754 * 120.06438 * 179.68623 * 16 15 14 18 18 C 1.34826 * 116.99724 * 174.49160 * 17 16 15 19 19 H 1.07998 * 120.00100 * 5.04739 * 18 17 16 20 20 C 1.38654 * 119.99970 * 185.05457 * 18 17 16 21 21 N 1.31557 * 120.00012 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99959 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47303 * 60.00249 * 22 20 18 24 24 H 1.48499 * 109.46956 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47359 * 299.99968 * 22 20 18 26 26 C 1.38871 * 119.86468 * 359.70509 * 16 15 14 27 27 C 1.38101 * 119.93230 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46805 * 300.00109 * 1 2 3 30 30 H 1.08999 * 109.46896 * 60.00562 * 1 2 3 31 31 H 1.08000 * 119.88042 * 0.02788 * 4 3 2 32 32 H 1.07999 * 119.76470 * 179.70152 * 5 4 3 33 33 H 1.08001 * 119.88625 * 179.97438 * 6 5 4 34 34 H 0.96697 * 114.00031 * 270.02462 * 8 7 6 35 35 H 1.08000 * 120.00022 * 359.73020 * 10 9 3 36 36 H 1.09002 * 109.46848 * 354.99688 * 12 11 10 37 37 H 1.09001 * 109.46885 * 235.00302 * 12 11 10 38 38 H 1.08005 * 119.96050 * 359.97425 * 14 13 12 39 39 H 1.07999 * 120.03730 * 180.26989 * 15 14 13 40 40 H 0.97002 * 120.00021 * 179.97438 * 21 20 18 41 41 H 1.08002 * 120.03853 * 179.97438 * 26 16 15 42 42 H 1.07997 * 119.96732 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2930 2.3728 0.0052 5 6 1.9181 3.6057 -0.0009 6 6 3.2982 3.6923 -0.0068 7 6 4.0691 2.5417 -0.0060 8 8 5.4234 2.6292 -0.0122 9 6 3.4452 1.2855 0.0005 10 6 4.2542 0.0565 0.0017 11 7 5.5473 0.1322 -0.0032 12 6 6.3528 -1.0916 -0.0027 13 6 7.1259 -1.1848 -1.2929 14 6 6.5730 -1.8310 -2.3835 15 6 7.2766 -1.9131 -3.5689 16 6 8.5455 -1.3562 -3.6615 17 8 9.2422 -1.4409 -4.8236 18 6 10.4172 -0.7822 -4.8822 19 1 10.8036 -0.2881 -4.0031 20 6 11.1292 -0.7391 -6.0711 21 7 10.6586 -1.3413 -7.1419 22 14 12.7568 0.1742 -6.1525 23 1 13.7101 -0.4261 -5.1850 24 1 13.3143 0.0707 -7.5249 25 1 12.5401 1.6033 -5.8121 26 6 9.1002 -0.7129 -2.5629 27 6 8.3893 -0.6292 -1.3819 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 0.2145 2.3163 0.0097 32 1 1.3244 4.5079 -0.0017 33 1 3.7766 4.6605 -0.0120 34 1 5.8120 2.6518 -0.8974 35 1 3.7698 -0.9088 0.0065 36 1 5.6977 -1.9576 0.0918 37 1 7.0479 -1.0686 0.8366 38 1 5.5883 -2.2683 -2.3092 39 1 6.8426 -2.4141 -4.4216 40 1 11.1566 -1.3108 -7.9738 41 1 10.0869 -0.2792 -2.6317 42 1 8.8203 -0.1294 -0.5271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727653038.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:28 Heat of formation + Delta-G solvation = -48.679087 kcal Electronic energy + Delta-G solvation = -26011.808879 eV Core-core repulsion = 22116.030519 eV Total energy + Delta-G solvation = -3895.778360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.28748 -40.82236 -39.37000 -38.67010 -36.79699 -36.73564 -34.34636 -32.79375 -31.84109 -30.88251 -30.23644 -28.18649 -27.67970 -26.57694 -24.22269 -23.66401 -23.01917 -22.19111 -21.00147 -19.87367 -19.42614 -18.86725 -17.97631 -17.56198 -16.85888 -16.67060 -16.51119 -16.41123 -16.09927 -15.89302 -15.58954 -15.49271 -15.21856 -14.98628 -14.91629 -14.44477 -14.15121 -13.85548 -13.53674 -13.26527 -13.22994 -12.97564 -12.85250 -12.60233 -12.49385 -12.36487 -12.15905 -12.11950 -11.87881 -11.51464 -11.50565 -11.20338 -10.81902 -10.11266 -9.82749 -9.45171 -9.08852 -8.93154 -8.48424 -6.16858 -0.13600 0.37892 0.55070 0.62230 1.34513 1.44980 1.50818 1.59670 2.17158 2.26349 2.73550 2.78630 3.08072 3.34251 3.47952 3.53828 3.84322 3.95333 4.01478 4.07713 4.17491 4.21992 4.31830 4.41212 4.45815 4.47353 4.54271 4.59227 4.68780 4.72967 4.79771 4.82798 5.02412 5.06585 5.13568 5.25346 5.27953 5.43739 5.49911 5.52636 5.64893 5.67770 5.76454 6.00772 6.15606 6.40135 6.89343 6.94474 6.96031 7.75604 8.74549 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017453 B = 0.002399 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.958902 B =11668.123812 C =12132.877124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.164 3.836 4 C -0.226 4.226 5 C -0.042 4.042 6 C -0.203 4.203 7 C 0.171 3.829 8 O -0.485 6.485 9 C -0.160 4.160 10 C 0.178 3.822 11 N -0.505 5.505 12 C 0.092 3.908 13 C -0.155 4.155 14 C -0.061 4.061 15 C -0.203 4.203 16 C 0.117 3.883 17 O -0.230 6.230 18 C -0.415 4.415 19 H 0.101 0.899 20 C -0.022 4.022 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.257 1.257 24 H -0.271 1.271 25 H -0.257 1.257 26 C -0.240 4.240 27 C -0.048 4.048 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.143 0.857 34 H 0.400 0.600 35 H 0.108 0.892 36 H 0.059 0.941 37 H 0.096 0.904 38 H 0.139 0.861 39 H 0.114 0.886 40 H 0.273 0.727 41 H 0.121 0.879 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.912 8.119 17.110 28.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.115 3.885 4 C -0.245 4.245 5 C -0.061 4.061 6 C -0.221 4.221 7 C 0.123 3.877 8 O -0.297 6.297 9 C -0.162 4.162 10 C -0.031 4.031 11 N -0.214 5.214 12 C -0.036 4.036 13 C -0.156 4.156 14 C -0.079 4.079 15 C -0.222 4.222 16 C 0.067 3.933 17 O -0.137 6.137 18 C -0.491 4.491 19 H 0.119 0.881 20 C -0.219 4.219 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.181 1.181 24 H -0.195 1.195 25 H -0.182 1.182 26 C -0.260 4.260 27 C -0.067 4.067 28 H 0.135 0.865 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.179 0.821 32 H 0.181 0.819 33 H 0.161 0.839 34 H 0.260 0.740 35 H 0.125 0.875 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.157 0.843 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.139 0.861 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -21.035 8.242 17.294 28.451 hybrid contribution 0.466 -0.635 -1.019 1.288 sum -20.568 7.607 16.275 27.309 Atomic orbital electron populations 1.23431 0.75807 1.05768 1.02770 1.86009 1.23907 1.26544 1.87785 1.19007 0.90260 0.85586 0.93616 1.21485 1.01588 0.91264 1.10130 1.21287 0.93524 0.98402 0.92878 1.21574 0.94830 0.98291 1.07448 1.18635 0.83874 0.90811 0.94378 1.84682 1.15492 1.95542 1.34019 1.18733 0.90565 0.93154 1.13722 1.23976 0.90913 0.95973 0.92201 1.72152 1.07464 1.30501 1.11280 1.21116 0.96618 0.91004 0.94845 1.19433 0.95762 1.04516 0.95911 1.20807 0.98910 0.97277 0.90935 1.20387 0.93597 1.08255 0.99956 1.19901 0.92130 0.94466 0.86839 1.83943 1.32981 1.65112 1.31635 1.21792 0.95639 1.32802 0.98908 0.88125 1.26600 1.03829 0.98130 0.93386 1.70178 1.40816 1.43090 1.01773 0.84653 0.74825 0.78373 0.78404 1.18131 1.19512 1.18165 1.21246 1.02417 1.08061 0.94238 1.20883 0.93662 0.95987 0.96148 0.86547 0.90960 0.91246 0.82057 0.81922 0.83927 0.74047 0.87468 0.92268 0.88582 0.84310 0.86778 0.91772 0.86127 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -5.70 9.68 -90.29 -0.87 -6.57 16 3 C 0.16 3.15 6.70 22.83 0.15 3.30 16 4 C -0.23 -3.08 9.03 22.34 0.20 -2.88 16 5 C -0.04 -0.55 10.02 22.28 0.22 -0.33 16 6 C -0.20 -3.65 9.97 22.34 0.22 -3.43 16 7 C 0.17 4.06 6.71 22.83 0.15 4.22 16 8 O -0.49 -12.77 11.38 -90.30 -1.03 -13.80 16 9 C -0.16 -3.86 5.89 -19.97 -0.12 -3.98 16 10 C 0.18 4.67 10.19 87.37 0.89 5.56 16 11 N -0.50 -14.69 8.34 -344.75 -2.88 -17.57 16 12 C 0.09 2.59 6.51 85.63 0.56 3.14 16 13 C -0.16 -5.32 5.47 -19.83 -0.11 -5.43 16 14 C -0.06 -2.20 9.69 22.25 0.22 -1.98 16 15 C -0.20 -9.02 9.99 22.39 0.22 -8.80 16 16 C 0.12 6.03 6.65 22.58 0.15 6.18 16 17 O -0.23 -14.16 9.76 -22.74 -0.22 -14.39 16 18 C -0.42 -24.63 9.49 67.92 0.64 -23.99 16 19 H 0.10 5.48 5.20 -2.91 -0.02 5.47 16 20 C -0.02 -1.26 5.49 84.83 0.47 -0.80 16 21 N -0.92 -57.18 13.67 21.61 0.30 -56.88 16 22 Si 1.02 43.40 29.55 68.60 2.03 45.43 16 23 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 26 C -0.24 -10.91 9.17 22.39 0.21 -10.70 16 27 C -0.05 -1.80 9.69 22.25 0.22 -1.58 16 28 H 0.12 0.54 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.35 7.65 -2.39 -0.02 0.33 16 30 H 0.07 0.39 7.67 -2.39 -0.02 0.37 16 31 H 0.16 1.14 6.28 -2.91 -0.02 1.12 16 32 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 33 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.40 9.16 9.06 -74.06 -0.67 8.49 16 35 H 0.11 2.52 7.34 -2.91 -0.02 2.49 16 36 H 0.06 1.44 7.63 -2.39 -0.02 1.43 16 37 H 0.10 2.51 8.08 -2.39 -0.02 2.49 16 38 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 39 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 40 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 41 H 0.12 5.52 5.64 -2.91 -0.02 5.51 16 42 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -77.24 365.47 3.13 -74.11 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.40 Total: 29.92 kcal Atomic # 6 Polarization: -45.65 SS G_CDS: 5.41 Total: -40.25 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -2.58 Total: -74.45 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -2.12 Total: -34.76 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -77.24 3.13 -74.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727653038.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.432 kcal (2) G-P(sol) polarization free energy of solvation -77.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds